Atomistry » Iron » PDB 7kvp-7lvz » 7lae
Atomistry »
  Iron »
    PDB 7kvp-7lvz »
      7lae »

Iron in PDB 7lae: Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4

Enzymatic activity of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4

All present enzymatic activity of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4:
1.11.2.2;

Protein crystallography data

The structure of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4, PDB code: 7lae was solved by J.A.Khan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.28 / 2.97
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 106.917, 106.917, 238.964, 90, 90, 90
R / Rfree (%) 21.6 / 26.7

Other elements in 7lae:

The structure of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Calcium (Ca) 2 atoms
Fluorine (F) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4 (pdb code 7lae). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4, PDB code: 7lae:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7lae

Go back to Iron Binding Sites List in 7lae
Iron binding site 1 out of 2 in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe601

b:70.8
occ:1.00
FE B:HEM601 0.0 70.8 1.0
NB B:HEM601 1.9 70.5 1.0
NC B:HEM601 2.0 70.7 1.0
ND B:HEM601 2.0 70.9 1.0
NA B:HEM601 2.0 71.0 1.0
NE2 B:HIS336 2.2 66.0 1.0
C4B B:HEM601 2.9 70.8 1.0
C4D B:HEM601 2.9 71.2 1.0
C1B B:HEM601 3.0 70.9 1.0
C1D B:HEM601 3.0 71.2 1.0
C1C B:HEM601 3.0 70.7 1.0
C4C B:HEM601 3.0 71.0 1.0
C1A B:HEM601 3.0 71.2 1.0
C4A B:HEM601 3.1 71.0 1.0
CE1 B:HIS336 3.1 66.0 1.0
CD2 B:HIS336 3.3 66.0 1.0
CHA B:HEM601 3.4 71.6 1.0
CHC B:HEM601 3.4 71.3 1.0
CHD B:HEM601 3.4 71.7 1.0
CHB B:HEM601 3.4 71.3 1.0
C3B B:HEM601 4.2 71.2 1.0
N5 B:XRV611 4.2 65.1 1.0
N6 B:XRV611 4.2 66.6 1.0
C2B B:HEM601 4.2 71.0 1.0
C3D B:HEM601 4.2 71.7 1.0
C2D B:HEM601 4.2 71.5 1.0
C2C B:HEM601 4.2 71.3 1.0
C2A B:HEM601 4.2 71.5 1.0
C3C B:HEM601 4.2 71.3 1.0
C3A B:HEM601 4.3 71.5 1.0
ND1 B:HIS336 4.3 66.7 1.0
CG B:HIS336 4.3 64.3 1.0
CD2 B:LEU417 4.4 71.7 1.0
N4 B:XRV611 4.8 64.3 1.0
C3 B:XRV611 4.9 65.1 1.0
CD1 B:LEU417 4.9 69.4 1.0

Iron binding site 2 out of 2 in 7lae

Go back to Iron Binding Sites List in 7lae
Iron binding site 2 out of 2 in the Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Myeloperoxidase Subform C (Mpo) Complex with Compound-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe604

b:47.4
occ:1.00
FE E:HEM604 0.0 47.4 1.0
NA E:HEM604 1.9 47.6 1.0
NB E:HEM604 2.0 47.1 1.0
ND E:HEM604 2.0 47.5 1.0
NC E:HEM604 2.0 47.3 1.0
NE2 E:HIS336 2.2 43.5 1.0
C4B E:HEM604 2.9 47.5 1.0
C4D E:HEM604 2.9 47.8 1.0
C1A E:HEM604 3.0 47.8 1.0
CE1 E:HIS336 3.0 43.0 1.0
C1B E:HEM604 3.0 47.6 1.0
C1D E:HEM604 3.0 47.8 1.0
C4A E:HEM604 3.0 47.5 1.0
C1C E:HEM604 3.0 47.2 1.0
C4C E:HEM604 3.0 47.5 1.0
CD2 E:HIS336 3.3 43.7 1.0
CHA E:HEM604 3.3 48.2 1.0
CHC E:HEM604 3.4 47.9 1.0
CHB E:HEM604 3.4 48.0 1.0
CHD E:HEM604 3.5 48.2 1.0
N6 E:XRV610 3.6 64.8 1.0
N5 E:XRV610 3.8 64.1 1.0
C3B E:HEM604 4.2 48.0 1.0
C2A E:HEM604 4.2 48.2 1.0
ND1 E:HIS336 4.2 43.0 1.0
C3A E:HEM604 4.2 48.0 1.0
C3D E:HEM604 4.2 48.3 1.0
C2B E:HEM604 4.2 47.8 1.0
C2D E:HEM604 4.2 48.2 1.0
C2C E:HEM604 4.2 47.8 1.0
C3C E:HEM604 4.2 47.8 1.0
CG E:HIS336 4.3 42.3 1.0
CD2 E:LEU417 4.5 64.8 1.0
C3 E:XRV610 4.5 63.8 1.0
N4 E:XRV610 4.7 62.0 1.0
CD1 E:LEU417 4.8 61.7 1.0
CG E:ARG333 4.9 41.8 1.0

Reference:

C.H.Hu, M.W.Neissel Valente, O.Scott Halpern, S.Jusuf, J.A.Khan, G.A.Locke, G.J.Duke, X.Liu, F.J.Duclos, R.R.Wexler, E.K.Kick, J.M.Smallheer. Small Molecule and Macrocyclic Pyrazole Derived Inhibitors of Myeloperoxidase (Mpo). Bioorg.Med.Chem.Lett. 28010 2021.
ISSN: ESSN 1464-3405
PubMed: 33811992
DOI: 10.1016/J.BMCL.2021.128010
Page generated: Thu Aug 8 06:55:37 2024

Last articles

F in 4L3L
F in 4L3J
F in 4L2O
F in 4L2G
F in 4KZL
F in 4KZD
F in 4KSQ
F in 4KZC
F in 4KSP
F in 4KY8
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy