Atomistry » Iron » PDB 7o4j-7oqr » 7o73
Atomistry »
  Iron »
    PDB 7o4j-7oqr »
      7o73 »

Iron in PDB 7o73: Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna

Enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna

All present enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna:
2.7.7.6; 3.6.4.12;

Other elements in 7o73:

The structure of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 2 atoms
Zinc (Zn) 17 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna (pdb code 7o73). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna, PDB code: 7o73:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7o73

Go back to Iron Binding Sites List in 7o73
Iron binding site 1 out of 4 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:130.7
occ:1.00
 FE1 0:SF4801 0.0 130.7 1.0
SG 0:CYS115 2.3 136.7 1.0
S3 0:SF4801 2.3 130.7 1.0
S2 0:SF4801 2.3 130.7 1.0
S4 0:SF4801 2.3 130.7 1.0
FE2 0:SF4801 2.7 130.7 1.0
FE3 0:SF4801 2.7 130.7 1.0
FE4 0:SF4801 2.7 130.7 1.0
CB 0:CYS115 3.3 136.7 1.0
CA 0:CYS115 3.6 136.7 1.0
S1 0:SF4801 3.9 130.7 1.0
N 0:LEU116 4.0 139.9 1.0
CB 0:HIS117 4.2 141.6 1.0
N 0:HIS117 4.2 141.6 1.0
C 0:CYS115 4.3 136.7 1.0
SG 0:CYS133 4.7 141.4 1.0
SG 0:CYS156 4.8 146.9 1.0
CA 0:HIS117 4.8 141.6 1.0
SG 0:CYS191 4.9 138.6 1.0
N 0:CYS115 4.9 136.7 1.0
CB 0:CYS133 5.0 141.4 1.0

Iron binding site 2 out of 4 in 7o73

Go back to Iron Binding Sites List in 7o73
Iron binding site 2 out of 4 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:130.7
occ:1.00
 FE2 0:SF4801 0.0 130.7 1.0
SG 0:CYS156 2.3 146.9 1.0
S1 0:SF4801 2.3 130.7 1.0
S4 0:SF4801 2.3 130.7 1.0
S3 0:SF4801 2.3 130.7 1.0
FE4 0:SF4801 2.7 130.7 1.0
FE3 0:SF4801 2.7 130.7 1.0
FE1 0:SF4801 2.7 130.7 1.0
CB 0:CYS156 3.6 146.9 1.0
S2 0:SF4801 3.9 130.7 1.0
CB 0:HIS117 4.5 141.6 1.0
CD2 0:HIS117 4.5 141.6 1.0
CB 0:TYR158 4.7 144.7 1.0
SG 0:CYS191 4.7 138.6 1.0
SG 0:CYS115 4.8 136.7 1.0
SG 0:CYS133 4.8 141.4 1.0
CG 0:HIS117 4.9 141.6 1.0
CD1 0:TYR158 4.9 144.7 1.0
CA 0:CYS156 4.9 146.9 1.0

Iron binding site 3 out of 4 in 7o73

Go back to Iron Binding Sites List in 7o73
Iron binding site 3 out of 4 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:130.7
occ:1.00
 FE3 0:SF4801 0.0 130.7 1.0
SG 0:CYS133 2.3 141.4 1.0
S1 0:SF4801 2.3 130.7 1.0
S2 0:SF4801 2.3 130.7 1.0
S4 0:SF4801 2.3 130.7 1.0
FE4 0:SF4801 2.7 130.7 1.0
FE2 0:SF4801 2.7 130.7 1.0
FE1 0:SF4801 2.7 130.7 1.0
CB 0:CYS133 3.2 141.4 1.0
S3 0:SF4801 3.9 130.7 1.0
CA 0:CYS133 3.9 141.4 1.0
CG2 0:THR137 4.4 144.6 1.0
CE2 0:PHE194 4.5 135.7 1.0
SG 0:CYS191 4.6 138.6 1.0
O 0:CYS133 4.7 141.4 1.0
C 0:CYS133 4.7 141.4 1.0
SG 0:CYS115 4.7 136.7 1.0
SG 0:CYS156 4.8 146.9 1.0
CD 0:ARG111 4.9 130.1 1.0

Iron binding site 4 out of 4 in 7o73

Go back to Iron Binding Sites List in 7o73
Iron binding site 4 out of 4 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Fe801

b:130.7
occ:1.00
 FE4 0:SF4801 0.0 130.7 1.0
SG 0:CYS191 2.3 138.6 1.0
S1 0:SF4801 2.3 130.7 1.0
S2 0:SF4801 2.3 130.7 1.0
S3 0:SF4801 2.3 130.7 1.0
FE3 0:SF4801 2.7 130.7 1.0
FE2 0:SF4801 2.7 130.7 1.0
FE1 0:SF4801 2.7 130.7 1.0
CB 0:CYS191 3.3 138.6 1.0
S4 0:SF4801 3.9 130.7 1.0
CA 0:CYS191 4.3 138.6 1.0
CD2 0:PHE194 4.5 135.7 1.0
SG 0:CYS133 4.7 141.4 1.0
SG 0:CYS156 4.7 146.9 1.0
CE2 0:PHE194 4.8 135.7 1.0
SG 0:CYS115 4.8 136.7 1.0
CB 0:TYR193 4.8 130.2 1.0
CA 0:CYS115 4.9 136.7 1.0
CB 0:TYR158 5.0 144.7 1.0

Reference:

S.Schilbach, S.Aibara, C.Dienemann, F.Grabbe, P.Cramer. Structure of Rna Polymerase II Pre-Initiation Complex at 2.9 Angstrom Defines Initial Dna Opening Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.05.012
Page generated: Thu Aug 8 14:14:06 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy