Iron in PDB 7ose: Cytochrome Bd-II Type Oxidase with Bound Aurachin D

All present enzymatic activity of Cytochrome Bd-II Type Oxidase with Bound Aurachin D:
1.10.3.10; 7.1.1.3;

The binding sites of Iron atom in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D (pdb code 7ose). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D, PDB code: 7ose:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:72.8 occ:1.00 FE A:HEB601 0.0 72.8 1.0 NA A:HEB601 2.0 72.8 1.0 NC A:HEB601 2.0 72.8 1.0 NB A:HEB601 2.0 72.8 1.0 ND A:HEB601 2.1 72.8 1.0 NE2 A:HIS186 2.6 64.1 1.0 SD A:MET393 2.8 76.9 1.0 C1C A:HEB601 3.0 72.8 1.0 C1A A:HEB601 3.0 72.8 1.0 C4A A:HEB601 3.0 72.8 1.0 C4C A:HEB601 3.1 72.8 1.0 C4B A:HEB601 3.2 72.8 1.0 C1B A:HEB601 3.2 72.8 1.0 C4D A:HEB601 3.2 72.8 1.0 C1D A:HEB601 3.3 72.8 1.0 CHC A:HEB601 3.4 72.8 1.0 CHA A:HEB601 3.5 72.8 1.0 CHB A:HEB601 3.5 72.8 1.0 CD2 A:HIS186 3.5 64.1 1.0 CE1 A:HIS186 3.5 64.1 1.0 CHD A:HEB601 3.6 72.8 1.0 CG A:MET393 3.9 76.9 1.0 CE A:MET393 3.9 76.9 1.0 C3A A:HEB601 4.2 72.8 1.0 C2C A:HEB601 4.2 72.8 1.0 C2A A:HEB601 4.2 72.8 1.0 C3C A:HEB601 4.2 72.8 1.0 C3B A:HEB601 4.4 72.8 1.0 C2B A:HEB601 4.4 72.8 1.0 CA A:GLY238 4.5 70.1 1.0 C3D A:HEB601 4.5 72.8 1.0 C2D A:HEB601 4.5 72.8 1.0 ND1 A:HIS186 4.6 64.1 1.0 CG A:HIS186 4.7 64.1 1.0

Iron binding site 2 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:76.4 occ:1.00 FE A:HEB602 0.0 76.4 1.0 NA A:HEB602 2.0 76.4 1.0 NC A:HEB602 2.0 76.4 1.0 NB A:HEB602 2.0 76.4 1.0 ND A:HEB602 2.1 76.4 1.0 C1C A:HEB602 3.0 76.4 1.0 C1A A:HEB602 3.0 76.4 1.0 C4A A:HEB602 3.0 76.4 1.0 C4C A:HEB602 3.0 76.4 1.0 C4B A:HEB602 3.2 76.4 1.0 C1B A:HEB602 3.2 76.4 1.0 C4D A:HEB602 3.2 76.4 1.0 C1D A:HEB602 3.3 76.4 1.0 OE1 A:GLU445 3.4 75.9 1.0 CHC A:HEB602 3.4 76.4 1.0 CE1 A:PHE12 3.5 74.5 1.0 CHA A:HEB602 3.5 76.4 1.0 CHB A:HEB602 3.5 76.4 1.0 CD A:GLU445 3.5 75.9 1.0 CHD A:HEB602 3.6 76.4 1.0 CG A:GLU445 3.7 75.9 1.0 CD1 A:PHE12 3.8 74.5 1.0 C3A A:HEB602 4.2 76.4 1.0 C2C A:HEB602 4.2 76.4 1.0 C2A A:HEB602 4.2 76.4 1.0 OE2 A:GLU445 4.2 75.9 1.0 C3C A:HEB602 4.2 76.4 1.0 CB A:GLU445 4.3 75.9 1.0 C3B A:HEB602 4.4 76.4 1.0 C2B A:HEB602 4.4 76.4 1.0 C3D A:HEB602 4.5 76.4 1.0 C2D A:HEB602 4.5 76.4 1.0 CZ A:PHE12 4.5 74.5 1.0 NH2 A:ARG448 4.7 79.5 1.0 CB A:ALA16 4.8 70.3 1.0

Iron binding site 3 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:72.2 occ:1.00 FE A:HDD603 0.0 72.2 1.0 NB A:HDD603 1.9 72.2 1.0 NA A:HDD603 1.9 72.2 1.0 NC A:HDD603 1.9 72.2 1.0 ND A:HDD603 1.9 72.2 1.0 NE2 A:HIS19 2.6 66.3 1.0 C4B A:HDD603 2.9 72.2 1.0 C1C A:HDD603 2.9 72.2 1.0 C1A A:HDD603 2.9 72.2 1.0 C4C A:HDD603 2.9 72.2 1.0 C4A A:HDD603 2.9 72.2 1.0 C4D A:HDD603 2.9 72.2 1.0 C1B A:HDD603 2.9 72.2 1.0 C1D A:HDD603 3.0 72.2 1.0 CHC A:HDD603 3.2 72.2 1.0 CHA A:HDD603 3.2 72.2 1.0 CHD A:HDD603 3.3 72.2 1.0 CHB A:HDD603 3.3 72.2 1.0 CE1 A:HIS19 3.3 66.3 1.0 CD2 A:HIS19 3.7 66.3 1.0 C2A A:HDD603 4.1 72.2 1.0 C2C A:HDD603 4.1 72.2 1.0 C3A A:HDD603 4.1 72.2 1.0 C3C A:HDD603 4.1 72.2 1.0 C2B A:HDD603 4.1 72.2 1.0 C3B A:HDD603 4.2 72.2 1.0 C2D A:HDD603 4.2 72.2 1.0 C3D A:HDD603 4.2 72.2 1.0 ND1 A:HIS19 4.5 66.3 1.0 CZ A:PHE104 4.6 76.7 1.0 OND A:HDD603 4.6 72.2 1.0 CG A:HIS19 4.7 66.3 1.0 CA A:GLY70 4.8 74.1 1.0 CG2 A:VAL23 4.9 65.8 1.0

Iron binding site 4 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:72.7 occ:1.00 FE D:HEB601 0.0 72.7 1.0 NA D:HEB601 2.0 72.7 1.0 NC D:HEB601 2.0 72.7 1.0 NB D:HEB601 2.0 72.7 1.0 ND D:HEB601 2.1 72.7 1.0 NE2 D:HIS186 2.6 64.0 1.0 SD D:MET393 2.8 76.9 1.0 C1C D:HEB601 3.0 72.7 1.0 C1A D:HEB601 3.0 72.7 1.0 C4A D:HEB601 3.0 72.7 1.0 C4C D:HEB601 3.1 72.7 1.0 C4B D:HEB601 3.2 72.7 1.0 C1B D:HEB601 3.2 72.7 1.0 C4D D:HEB601 3.2 72.7 1.0 C1D D:HEB601 3.3 72.7 1.0 CHC D:HEB601 3.4 72.7 1.0 CHA D:HEB601 3.5 72.7 1.0 CHB D:HEB601 3.5 72.7 1.0 CD2 D:HIS186 3.5 64.0 1.0 CE1 D:HIS186 3.5 64.0 1.0 CHD D:HEB601 3.6 72.7 1.0 CG D:MET393 3.9 76.9 1.0 CE D:MET393 3.9 76.9 1.0 C3A D:HEB601 4.2 72.7 1.0 C2C D:HEB601 4.2 72.7 1.0 C2A D:HEB601 4.2 72.7 1.0 C3C D:HEB601 4.2 72.7 1.0 C3B D:HEB601 4.4 72.7 1.0 C2B D:HEB601 4.4 72.7 1.0 CA D:GLY238 4.5 70.2 1.0 C3D D:HEB601 4.5 72.7 1.0 C2D D:HEB601 4.5 72.7 1.0 ND1 D:HIS186 4.6 64.0 1.0 CG D:HIS186 4.7 64.0 1.0

Iron binding site 5 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe602 b:76.2 occ:1.00 FE D:HEB602 0.0 76.2 1.0 NA D:HEB602 2.0 76.2 1.0 NC D:HEB602 2.0 76.2 1.0 NB D:HEB602 2.0 76.2 1.0 ND D:HEB602 2.1 76.2 1.0 C1C D:HEB602 3.0 76.2 1.0 C1A D:HEB602 3.0 76.2 1.0 C4A D:HEB602 3.0 76.2 1.0 C4C D:HEB602 3.0 76.2 1.0 C4B D:HEB602 3.2 76.2 1.0 C1B D:HEB602 3.2 76.2 1.0 C4D D:HEB602 3.2 76.2 1.0 C1D D:HEB602 3.3 76.2 1.0 OE1 D:GLU445 3.4 75.7 1.0 CHC D:HEB602 3.4 76.2 1.0 CE1 D:PHE12 3.5 74.9 1.0 CHA D:HEB602 3.5 76.2 1.0 CHB D:HEB602 3.5 76.2 1.0 CD D:GLU445 3.5 75.7 1.0 CHD D:HEB602 3.6 76.2 1.0 CG D:GLU445 3.7 75.7 1.0 CD1 D:PHE12 3.8 74.9 1.0 C3A D:HEB602 4.2 76.2 1.0 C2C D:HEB602 4.2 76.2 1.0 C2A D:HEB602 4.2 76.2 1.0 OE2 D:GLU445 4.2 75.7 1.0 C3C D:HEB602 4.2 76.2 1.0 CB D:GLU445 4.3 75.7 1.0 C3B D:HEB602 4.4 76.2 1.0 C2B D:HEB602 4.4 76.2 1.0 C3D D:HEB602 4.5 76.2 1.0 C2D D:HEB602 4.5 76.2 1.0 CZ D:PHE12 4.5 74.9 1.0 NH2 D:ARG448 4.7 79.4 1.0 CB D:ALA16 4.8 70.4 1.0

Iron binding site 6 out of 6 in the Cytochrome Bd-II Type Oxidase with Bound Aurachin D


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cytochrome Bd-II Type Oxidase with Bound Aurachin D within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe603 b:72.2 occ:1.00 FE D:HDD603 0.0 72.2 1.0 NB D:HDD603 1.9 72.2 1.0 NA D:HDD603 1.9 72.2 1.0 NC D:HDD603 1.9 72.2 1.0 ND D:HDD603 2.0 72.2 1.0 NE2 D:HIS19 2.6 66.2 1.0 C4B D:HDD603 2.9 72.2 1.0 C1C D:HDD603 2.9 72.2 1.0 C1A D:HDD603 2.9 72.2 1.0 C4C D:HDD603 2.9 72.2 1.0 C4A D:HDD603 2.9 72.2 1.0 C4D D:HDD603 2.9 72.2 1.0 C1B D:HDD603 2.9 72.2 1.0 C1D D:HDD603 3.0 72.2 1.0 CHC D:HDD603 3.2 72.2 1.0 CHA D:HDD603 3.2 72.2 1.0 CHD D:HDD603 3.3 72.2 1.0 CHB D:HDD603 3.3 72.2 1.0 CE1 D:HIS19 3.3 66.2 1.0 CD2 D:HIS19 3.7 66.2 1.0 C2A D:HDD603 4.1 72.2 1.0 C2C D:HDD603 4.1 72.2 1.0 C3A D:HDD603 4.1 72.2 1.0 C3C D:HDD603 4.1 72.2 1.0 C2B D:HDD603 4.1 72.2 1.0 C3B D:HDD603 4.2 72.2 1.0 C2D D:HDD603 4.2 72.2 1.0 C3D D:HDD603 4.2 72.2 1.0 ND1 D:HIS19 4.5 66.2 1.0 CZ D:PHE104 4.6 76.7 1.0 OND D:HDD603 4.6 72.2 1.0 CG D:HIS19 4.7 66.2 1.0 CA D:GLY70 4.8 74.1 1.0 CG2 D:VAL23 4.9 66.0 1.0

A.Grauel, J.Kaegi, T.Rasmussen, I.Makarchuk, S.Oppermann, A.F.A.Moumbock, D.Wohlwend, R.Mueller, F.Melin, S.Guenther, P.Hellwig, B.Boettcher, T.Friedrich. Structure of Escherichia Coli Cytochrome Bd-II Type Oxidase with Bound Aurachin D Nat Commun 2021.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-021-26835-2