Atomistry » Iron » PDB 7qhm-7r2r » 7qso
Atomistry »
  Iron »
    PDB 7qhm-7r2r »
      7qso »

Iron in PDB 7qso: Bovine Complex I in Lipid Nanodisc, State 3 (Slack)

Enzymatic activity of Bovine Complex I in Lipid Nanodisc, State 3 (Slack)

All present enzymatic activity of Bovine Complex I in Lipid Nanodisc, State 3 (Slack):
1.6.5.3; 1.6.99.3; 7.1.1.2;

Other elements in 7qso:

The structure of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Magnesium (Mg) 1 atom
Potassium (K) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack) (pdb code 7qso). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack), PDB code: 7qso:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 1 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:31.4
occ:1.00
 FE1 B:SF4302 0.0 31.4 1.0
SG B:CYS119 2.3 27.8 1.0
S4 B:SF4302 2.3 31.4 1.0
S3 B:SF4302 2.3 31.4 1.0
S2 B:SF4302 2.3 31.4 1.0
FE2 B:SF4302 2.7 31.4 1.0
FE4 B:SF4302 2.7 31.4 1.0
FE3 B:SF4302 2.7 31.4 1.0
CB B:CYS119 3.2 27.8 1.0
S1 B:SF4302 3.9 31.4 1.0
OG1 B:THR91 4.0 30.7 1.0
N B:CYS119 4.1 27.8 1.0
CQ2 D:2MR85 4.2 31.1 1.0
CA B:CYS119 4.3 27.8 1.0
SG B:CYS149 4.4 26.3 1.0
SG B:CYS55 4.8 31.0 1.0
N B:THR91 4.9 30.7 1.0
CE2 B:TYR126 4.9 28.0 1.0
SG B:CYS54 4.9 31.2 1.0
CA B:GLY90 5.0 30.6 1.0

Iron binding site 2 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 2 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:31.4
occ:1.00
 FE2 B:SF4302 0.0 31.4 1.0
SG B:CYS149 2.2 26.3 1.0
S1 B:SF4302 2.3 31.4 1.0
S3 B:SF4302 2.3 31.4 1.0
S4 B:SF4302 2.3 31.4 1.0
FE4 B:SF4302 2.7 31.4 1.0
FE1 B:SF4302 2.7 31.4 1.0
FE3 B:SF4302 2.7 31.4 1.0
CB B:CYS149 3.3 26.3 1.0
CA B:CYS149 3.4 26.3 1.0
C B:CYS149 3.6 26.3 1.0
S2 B:SF4302 3.9 31.4 1.0
N B:PRO150 4.1 28.9 1.0
O B:CYS149 4.1 26.3 1.0
NE D:ARG105 4.2 27.8 1.0
CD2 D:HIS190 4.4 29.2 1.0
NE2 D:HIS190 4.4 29.2 1.0
CA B:PRO150 4.5 28.9 1.0
SG B:CYS55 4.6 31.0 1.0
SG B:CYS119 4.7 27.8 1.0
N B:CYS149 4.7 26.3 1.0
CD B:PRO150 4.7 28.9 1.0
O B:GLY148 4.8 26.2 1.0
SG B:CYS54 4.8 31.2 1.0
NH2 D:ARG105 4.9 27.8 1.0
CD D:ARG105 4.9 27.8 1.0
CZ D:ARG105 5.0 27.8 1.0

Iron binding site 3 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 3 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:31.4
occ:1.00
 FE3 B:SF4302 0.0 31.4 1.0
S4 B:SF4302 2.3 31.4 1.0
S2 B:SF4302 2.3 31.4 1.0
S1 B:SF4302 2.3 31.4 1.0
SG B:CYS54 2.3 31.2 1.0
FE1 B:SF4302 2.7 31.4 1.0
FE2 B:SF4302 2.7 31.4 1.0
FE4 B:SF4302 2.7 31.4 1.0
CB B:CYS54 2.8 31.2 1.0
CQ2 D:2MR85 3.6 31.1 1.0
NE2 D:HIS190 3.8 29.2 1.0
N B:CYS54 3.9 31.2 1.0
CA B:CYS54 3.9 31.2 1.0
S3 B:SF4302 3.9 31.4 1.0
CG D:ARG105 4.3 27.8 1.0
N B:CYS55 4.3 31.0 1.0
C B:CYS54 4.5 31.2 1.0
CD2 D:HIS190 4.6 29.2 1.0
SG B:CYS149 4.7 26.3 1.0
CE1 D:HIS190 4.8 29.2 1.0
SG B:CYS119 4.8 27.8 1.0
CB B:ALA53 4.8 32.7 1.0
CD D:ARG105 4.8 27.8 1.0
NE D:ARG105 4.9 27.8 1.0
SG B:CYS55 4.9 31.0 1.0
CB D:ARG105 4.9 27.8 1.0
NH2 D:2MR85 4.9 31.1 1.0

Iron binding site 4 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 4 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe302

b:31.4
occ:1.00
 FE4 B:SF4302 0.0 31.4 1.0
S3 B:SF4302 2.3 31.4 1.0
S2 B:SF4302 2.3 31.4 1.0
SG B:CYS55 2.3 31.0 1.0
S1 B:SF4302 2.3 31.4 1.0
FE2 B:SF4302 2.7 31.4 1.0
FE1 B:SF4302 2.7 31.4 1.0
FE3 B:SF4302 2.7 31.4 1.0
CB B:CYS55 3.3 31.0 1.0
N B:CYS55 3.6 31.0 1.0
CA B:CYS55 3.9 31.0 1.0
S4 B:SF4302 3.9 31.4 1.0
CB B:CYS54 4.2 31.2 1.0
CB B:PRO150 4.4 28.9 1.0
CA B:PRO150 4.4 28.9 1.0
C B:CYS54 4.5 31.2 1.0
SG B:CYS54 4.7 31.2 1.0
CA B:GLY90 4.8 30.6 1.0
N B:CYS54 4.8 31.2 1.0
CA B:CYS54 4.8 31.2 1.0
SG B:CYS119 4.8 27.8 1.0
SG B:CYS149 4.8 26.3 1.0
N B:PRO150 4.8 28.9 1.0
CA B:CYS149 4.8 26.3 1.0
CA B:GLY117 4.9 27.7 1.0

Iron binding site 5 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 5 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:48.4
occ:1.00
 FE1 E:FES301 0.0 48.4 1.0
S1 E:FES301 2.2 48.4 1.0
S2 E:FES301 2.2 48.4 1.0
SG E:CYS108 2.3 43.6 1.0
SG E:CYS103 2.3 42.5 1.0
FE2 E:FES301 2.7 48.4 1.0
CB E:CYS108 3.2 43.6 1.0
CB E:CYS103 3.3 42.5 1.0
CA E:CYS144 4.1 41.8 1.0
N E:CYS108 4.2 43.6 1.0
N E:LEU145 4.3 43.0 1.0
CA E:CYS108 4.3 43.6 1.0
SG E:CYS144 4.5 41.8 1.0
CG E:MET153 4.6 46.9 1.0
CB E:CYS144 4.6 41.8 1.0
CA E:CYS103 4.7 42.5 1.0
CB E:THR105 4.7 40.5 1.0
C E:CYS144 4.8 41.8 1.0
SD E:MET153 4.8 46.9 1.0
SG E:CYS148 4.8 46.2 1.0
CA E:CYS148 4.8 46.2 1.0
OG1 E:THR105 4.8 40.5 1.0
C E:CYS103 4.9 42.5 1.0
N E:THR105 4.9 40.5 1.0
O E:ALA147 5.0 45.9 1.0
N E:CYS144 5.0 41.8 1.0

Iron binding site 6 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 6 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:48.4
occ:1.00
 FE2 E:FES301 0.0 48.4 1.0
S2 E:FES301 2.2 48.4 1.0
S1 E:FES301 2.2 48.4 1.0
SG E:CYS148 2.3 46.2 1.0
SG E:CYS144 2.3 41.8 1.0
FE1 E:FES301 2.7 48.4 1.0
CB E:CYS144 3.3 41.8 1.0
CB E:CYS148 3.4 46.2 1.0
CA E:CYS148 3.6 46.2 1.0
CA E:CYS144 3.7 41.8 1.0
N E:CYS148 3.8 46.2 1.0
N E:LEU145 4.0 43.0 1.0
N E:GLY146 4.1 44.4 1.0
N E:ALA147 4.2 45.9 1.0
N F:GLY103 4.3 43.5 1.0
C E:CYS144 4.3 41.8 1.0
C E:ALA147 4.3 45.9 1.0
SG E:CYS103 4.4 42.5 1.0
SG E:CYS108 4.5 43.6 1.0
CA E:GLY146 4.7 44.4 1.0
O E:ALA147 4.8 45.9 1.0
C E:GLY146 4.8 44.4 1.0
CA F:PRO102 5.0 40.3 1.0
CA E:ALA147 5.0 45.9 1.0
CA F:GLY103 5.0 43.5 1.0
CB E:PRO107 5.0 42.7 1.0
C E:LEU145 5.0 43.0 1.0
N E:CYS144 5.0 41.8 1.0

Iron binding site 7 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 7 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:31.4
occ:1.00
 FE1 F:SF4502 0.0 31.4 1.0
S3 F:SF4502 2.3 31.4 1.0
S4 F:SF4502 2.3 31.4 1.0
S2 F:SF4502 2.3 31.4 1.0
SG F:CYS362 2.3 29.2 1.0
FE2 F:SF4502 2.7 31.4 1.0
FE3 F:SF4502 2.7 31.4 1.0
FE4 F:SF4502 2.7 31.4 1.0
CB F:CYS362 3.4 29.2 1.0
N F:CYS362 3.7 29.2 1.0
S1 F:SF4502 3.9 31.4 1.0
CB F:CYS365 3.9 29.2 1.0
CA F:CYS362 4.0 29.2 1.0
N F:ILE404 4.1 29.2 1.0
CB F:ILE404 4.3 29.2 1.0
O F:CYS362 4.3 29.2 1.0
SG F:CYS365 4.5 29.2 1.0
C F:CYS362 4.5 29.2 1.0
CB F:THR403 4.5 29.8 1.0
CB F:GLN361 4.6 29.9 1.0
CG1 F:ILE404 4.7 29.2 1.0
N F:CYS405 4.7 32.0 1.0
SG F:CYS359 4.7 31.3 1.0
CA F:ILE404 4.8 29.2 1.0
C F:GLN361 4.8 29.9 1.0
N F:GLN361 4.8 29.9 1.0
CD1 F:ILE404 4.8 29.2 1.0
CG2 F:THR403 4.8 29.8 1.0
SG F:CYS405 4.8 32.0 1.0
CA F:GLN361 5.0 29.9 1.0

Iron binding site 8 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 8 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:31.4
occ:1.00
 FE2 F:SF4502 0.0 31.4 1.0
SG F:CYS365 2.2 29.2 1.0
S4 F:SF4502 2.3 31.4 1.0
S1 F:SF4502 2.3 31.4 1.0
S3 F:SF4502 2.3 31.4 1.0
FE1 F:SF4502 2.7 31.4 1.0
FE4 F:SF4502 2.7 31.4 1.0
FE3 F:SF4502 2.7 31.4 1.0
CB F:CYS365 2.9 29.2 1.0
OG F:SER358 3.4 33.1 1.0
S2 F:SF4502 3.9 31.4 1.0
CB F:SER358 4.1 33.1 1.0
CA F:SER358 4.2 33.1 1.0
N F:CYS359 4.2 31.3 1.0
CA F:CYS365 4.3 29.2 1.0
CD2 F:LEU407 4.3 34.2 1.0
CB F:LEU407 4.5 34.2 1.0
SG F:CYS405 4.6 32.0 1.0
SG F:CYS362 4.6 29.2 1.0
C F:SER358 4.6 33.1 1.0
C F:CYS365 4.7 29.2 1.0
N F:GLY408 4.7 33.4 1.0
SG F:CYS359 4.8 31.3 1.0
CG F:LEU407 4.8 34.2 1.0
N F:GLY360 4.9 31.0 1.0
CD1 F:LEU407 5.0 34.2 1.0
N F:ARG366 5.0 30.1 1.0

Iron binding site 9 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 9 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:31.4
occ:1.00
 FE3 F:SF4502 0.0 31.4 1.0
SG F:CYS405 2.2 32.0 1.0
S4 F:SF4502 2.3 31.4 1.0
S2 F:SF4502 2.3 31.4 1.0
S1 F:SF4502 2.3 31.4 1.0
FE4 F:SF4502 2.7 31.4 1.0
FE2 F:SF4502 2.7 31.4 1.0
FE1 F:SF4502 2.7 31.4 1.0
CB F:CYS405 3.5 32.0 1.0
N F:CYS405 3.7 32.0 1.0
S3 F:SF4502 3.9 31.4 1.0
CA F:CYS405 4.1 32.0 1.0
CB F:LEU407 4.2 34.2 1.0
CG F:PRO203 4.2 31.9 1.0
CD1 F:ILE185 4.4 34.2 1.0
C F:CYS405 4.5 32.0 1.0
SG F:CYS359 4.6 31.3 1.0
CD F:PRO203 4.6 31.9 1.0
N F:LEU407 4.7 34.2 1.0
SG F:CYS365 4.8 29.2 1.0
O F:CYS405 4.8 32.0 1.0
SG F:CYS362 4.8 29.2 1.0
C F:ILE404 4.8 29.2 1.0
CB F:ILE404 4.9 29.2 1.0
N F:GLY408 4.9 33.4 1.0
N F:ILE404 5.0 29.2 1.0
CA F:LEU407 5.0 34.2 1.0

Iron binding site 10 out of 28 in 7qso

Go back to Iron Binding Sites List in 7qso
Iron binding site 10 out of 28 in the Bovine Complex I in Lipid Nanodisc, State 3 (Slack)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Bovine Complex I in Lipid Nanodisc, State 3 (Slack) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:31.4
occ:1.00
 FE4 F:SF4502 0.0 31.4 1.0
SG F:CYS359 2.2 31.3 1.0
S3 F:SF4502 2.3 31.4 1.0
S1 F:SF4502 2.3 31.4 1.0
S2 F:SF4502 2.3 31.4 1.0
FE3 F:SF4502 2.7 31.4 1.0
FE2 F:SF4502 2.7 31.4 1.0
FE1 F:SF4502 2.7 31.4 1.0
CB F:CYS359 3.4 31.3 1.0
N F:CYS359 3.5 31.3 1.0
N F:GLN361 3.8 29.9 1.0
S4 F:SF4502 3.9 31.4 1.0
CA F:CYS359 3.9 31.3 1.0
N F:GLY360 3.9 31.0 1.0
CB F:GLN361 4.0 29.9 1.0
C F:CYS359 4.2 31.3 1.0
CD F:PRO203 4.4 31.9 1.0
CA F:GLN361 4.5 29.9 1.0
N F:CYS362 4.6 29.2 1.0
C F:SER358 4.6 33.1 1.0
OG F:SER358 4.6 33.1 1.0
SG F:CYS405 4.7 32.0 1.0
C F:GLY360 4.7 31.0 1.0
NE2 F:GLN361 4.8 29.9 1.0
CA F:GLY360 4.8 31.0 1.0
CG F:PRO203 4.8 31.9 1.0
SG F:CYS365 4.8 29.2 1.0
SG F:CYS362 4.9 29.2 1.0
CA F:SER358 4.9 33.1 1.0
CD1 F:ILE185 5.0 34.2 1.0

Reference:

I.Chung, J.J.Wright, H.R.Bridges, B.S.Ivanov, O.Biner, C.S.Pereira, G.M.Arantes, J.Hirst. Cryo-Em Structures Define Ubiquinone-10 Binding to Mitochondrial Complex I and Conformational Transitions Accompanying Q-Site Occupancy. Nat Commun V. 13 2758 2022.
ISSN: ESSN 2041-1723
PubMed: 35589726
DOI: 10.1038/S41467-022-30506-1
Page generated: Thu Aug 8 20:07:22 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy