Iron in PDB 7qth: Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
Protein crystallography data
The structure of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A, PDB code: 7qth
was solved by
M.J.Edwards,
T.A.Clarke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
77.73 /
1.90
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.061,
89.797,
154.286,
90,
90,
90
|
|
R / Rfree (%)
|
15.1 /
19.6
|
Other elements in 7qth:
The structure of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
(pdb code 7qth). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A, PDB code: 7qth:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 1 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:11.0
occ:0.50
|
FE
|
A:HEC801
|
0.0
|
11.0
|
0.5
|
|
FE
|
A:HEC801
|
0.1
|
10.2
|
0.5
|
|
NA
|
A:HEC801
|
2.0
|
10.3
|
0.5
|
|
ND
|
A:HEC801
|
2.0
|
10.5
|
0.5
|
|
NE2
|
A:HIS233
|
2.0
|
9.2
|
1.0
|
|
NE2
|
A:HIS190
|
2.0
|
9.8
|
1.0
|
|
NC
|
A:HEC801
|
2.0
|
10.7
|
0.5
|
|
NA
|
A:HEC801
|
2.0
|
11.5
|
0.5
|
|
ND
|
A:HEC801
|
2.1
|
11.5
|
0.5
|
|
NB
|
A:HEC801
|
2.1
|
10.9
|
0.5
|
|
NC
|
A:HEC801
|
2.1
|
9.9
|
0.5
|
|
NB
|
A:HEC801
|
2.1
|
10.1
|
0.5
|
|
C1A
|
A:HEC801
|
3.0
|
10.2
|
0.5
|
|
C4D
|
A:HEC801
|
3.0
|
10.1
|
0.5
|
|
CE1
|
A:HIS190
|
3.0
|
9.8
|
1.0
|
|
C4A
|
A:HEC801
|
3.0
|
10.3
|
0.5
|
|
CE1
|
A:HIS233
|
3.0
|
9.0
|
1.0
|
|
C1D
|
A:HEC801
|
3.0
|
10.3
|
0.5
|
|
C4C
|
A:HEC801
|
3.0
|
11.4
|
0.5
|
|
CD2
|
A:HIS233
|
3.1
|
9.5
|
1.0
|
|
C4D
|
A:HEC801
|
3.1
|
11.2
|
0.5
|
|
C4A
|
A:HEC801
|
3.1
|
11.5
|
0.5
|
|
C1C
|
A:HEC801
|
3.1
|
10.8
|
0.5
|
|
C1D
|
A:HEC801
|
3.1
|
11.2
|
0.5
|
|
C1B
|
A:HEC801
|
3.1
|
10.8
|
0.5
|
|
C1A
|
A:HEC801
|
3.1
|
11.6
|
0.5
|
|
C4B
|
A:HEC801
|
3.1
|
10.7
|
0.5
|
|
C1B
|
A:HEC801
|
3.1
|
10.0
|
0.5
|
|
C4C
|
A:HEC801
|
3.1
|
10.6
|
0.5
|
|
CD2
|
A:HIS190
|
3.1
|
9.7
|
1.0
|
|
C1C
|
A:HEC801
|
3.1
|
10.2
|
0.5
|
|
C4B
|
A:HEC801
|
3.2
|
10.1
|
0.5
|
|
CHA
|
A:HEC801
|
3.4
|
10.0
|
0.5
|
|
CHB
|
A:HEC801
|
3.4
|
10.0
|
0.5
|
|
CHB
|
A:HEC801
|
3.4
|
10.8
|
0.5
|
|
CHD
|
A:HEC801
|
3.4
|
10.8
|
0.5
|
|
CHD
|
A:HEC801
|
3.4
|
10.0
|
0.5
|
|
CHA
|
A:HEC801
|
3.4
|
11.2
|
0.5
|
|
CHC
|
A:HEC801
|
3.5
|
10.5
|
0.5
|
|
CHC
|
A:HEC801
|
3.5
|
9.9
|
0.5
|
|
ND1
|
A:HIS190
|
4.1
|
9.7
|
1.0
|
|
ND1
|
A:HIS233
|
4.1
|
8.8
|
1.0
|
|
CG
|
A:HIS233
|
4.2
|
9.2
|
1.0
|
|
CG
|
A:HIS190
|
4.2
|
9.6
|
1.0
|
|
C2A
|
A:HEC801
|
4.3
|
10.1
|
0.5
|
|
C3A
|
A:HEC801
|
4.3
|
10.0
|
0.5
|
|
C3D
|
A:HEC801
|
4.3
|
10.5
|
0.5
|
|
C2D
|
A:HEC801
|
4.3
|
10.2
|
0.5
|
|
C3D
|
A:HEC801
|
4.3
|
11.4
|
0.5
|
|
C3C
|
A:HEC801
|
4.3
|
11.0
|
0.5
|
|
C3A
|
A:HEC801
|
4.4
|
11.2
|
0.5
|
|
C3B
|
A:HEC801
|
4.4
|
10.9
|
0.5
|
|
C2A
|
A:HEC801
|
4.4
|
12.1
|
0.5
|
|
C2D
|
A:HEC801
|
4.4
|
11.1
|
0.5
|
|
C2C
|
A:HEC801
|
4.4
|
10.9
|
0.5
|
|
C2B
|
A:HEC801
|
4.4
|
10.8
|
0.5
|
|
C3C
|
A:HEC801
|
4.4
|
10.4
|
0.5
|
|
C3B
|
A:HEC801
|
4.4
|
10.4
|
0.5
|
|
C2B
|
A:HEC801
|
4.4
|
10.2
|
0.5
|
|
C2C
|
A:HEC801
|
4.5
|
10.2
|
0.5
|
|
Iron binding site 2 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 2 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:10.2
occ:0.50
|
FE
|
A:HEC801
|
0.0
|
10.2
|
0.5
|
|
FE
|
A:HEC801
|
0.1
|
11.0
|
0.5
|
|
NC
|
A:HEC801
|
2.0
|
10.7
|
0.5
|
|
NB
|
A:HEC801
|
2.0
|
10.9
|
0.5
|
|
NC
|
A:HEC801
|
2.0
|
9.9
|
0.5
|
|
NE2
|
A:HIS233
|
2.0
|
9.2
|
1.0
|
|
NE2
|
A:HIS190
|
2.0
|
9.8
|
1.0
|
|
NA
|
A:HEC801
|
2.0
|
10.3
|
0.5
|
|
ND
|
A:HEC801
|
2.1
|
10.5
|
0.5
|
|
NB
|
A:HEC801
|
2.1
|
10.1
|
0.5
|
|
ND
|
A:HEC801
|
2.1
|
11.5
|
0.5
|
|
NA
|
A:HEC801
|
2.1
|
11.5
|
0.5
|
|
C1C
|
A:HEC801
|
3.0
|
10.8
|
0.5
|
|
C4C
|
A:HEC801
|
3.0
|
11.4
|
0.5
|
|
C4B
|
A:HEC801
|
3.0
|
10.7
|
0.5
|
|
CE1
|
A:HIS233
|
3.0
|
9.0
|
1.0
|
|
CE1
|
A:HIS190
|
3.0
|
9.8
|
1.0
|
|
C1C
|
A:HEC801
|
3.0
|
10.2
|
0.5
|
|
C1B
|
A:HEC801
|
3.0
|
10.8
|
0.5
|
|
C4C
|
A:HEC801
|
3.0
|
10.6
|
0.5
|
|
C1D
|
A:HEC801
|
3.1
|
10.3
|
0.5
|
|
C4A
|
A:HEC801
|
3.1
|
10.3
|
0.5
|
|
C4B
|
A:HEC801
|
3.1
|
10.1
|
0.5
|
|
CD2
|
A:HIS233
|
3.1
|
9.5
|
1.0
|
|
C4D
|
A:HEC801
|
3.1
|
10.1
|
0.5
|
|
CD2
|
A:HIS190
|
3.1
|
9.7
|
1.0
|
|
C1A
|
A:HEC801
|
3.1
|
10.2
|
0.5
|
|
C1B
|
A:HEC801
|
3.1
|
10.0
|
0.5
|
|
C1D
|
A:HEC801
|
3.1
|
11.2
|
0.5
|
|
C4A
|
A:HEC801
|
3.1
|
11.5
|
0.5
|
|
C4D
|
A:HEC801
|
3.1
|
11.2
|
0.5
|
|
C1A
|
A:HEC801
|
3.2
|
11.6
|
0.5
|
|
CHC
|
A:HEC801
|
3.3
|
10.5
|
0.5
|
|
CHD
|
A:HEC801
|
3.4
|
10.8
|
0.5
|
|
CHD
|
A:HEC801
|
3.4
|
10.0
|
0.5
|
|
CHB
|
A:HEC801
|
3.4
|
10.0
|
0.5
|
|
CHC
|
A:HEC801
|
3.4
|
9.9
|
0.5
|
|
CHB
|
A:HEC801
|
3.4
|
10.8
|
0.5
|
|
CHA
|
A:HEC801
|
3.5
|
10.0
|
0.5
|
|
CHA
|
A:HEC801
|
3.6
|
11.2
|
0.5
|
|
ND1
|
A:HIS190
|
4.1
|
9.7
|
1.0
|
|
ND1
|
A:HIS233
|
4.2
|
8.8
|
1.0
|
|
CG
|
A:HIS190
|
4.2
|
9.6
|
1.0
|
|
CG
|
A:HIS233
|
4.2
|
9.2
|
1.0
|
|
C3C
|
A:HEC801
|
4.3
|
11.0
|
0.5
|
|
C2C
|
A:HEC801
|
4.3
|
10.9
|
0.5
|
|
C3B
|
A:HEC801
|
4.3
|
10.9
|
0.5
|
|
C3C
|
A:HEC801
|
4.3
|
10.4
|
0.5
|
|
C2B
|
A:HEC801
|
4.3
|
10.8
|
0.5
|
|
C2C
|
A:HEC801
|
4.4
|
10.2
|
0.5
|
|
C3B
|
A:HEC801
|
4.4
|
10.4
|
0.5
|
|
C3A
|
A:HEC801
|
4.4
|
10.0
|
0.5
|
|
C2D
|
A:HEC801
|
4.4
|
10.2
|
0.5
|
|
C3D
|
A:HEC801
|
4.4
|
10.5
|
0.5
|
|
C2A
|
A:HEC801
|
4.4
|
10.1
|
0.5
|
|
C2B
|
A:HEC801
|
4.4
|
10.2
|
0.5
|
|
C2D
|
A:HEC801
|
4.4
|
11.1
|
0.5
|
|
C3D
|
A:HEC801
|
4.4
|
11.4
|
0.5
|
|
C3A
|
A:HEC801
|
4.4
|
11.2
|
0.5
|
|
C2A
|
A:HEC801
|
4.5
|
12.1
|
0.5
|
|
Iron binding site 3 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 3 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe802
b:10.6
occ:1.00
|
FE
|
A:HEC802
|
0.0
|
10.6
|
1.0
|
|
NE2
|
A:HIS210
|
2.0
|
9.1
|
1.0
|
|
NC
|
A:HEC802
|
2.0
|
11.2
|
1.0
|
|
NA
|
A:HEC802
|
2.0
|
10.2
|
1.0
|
|
ND
|
A:HEC802
|
2.0
|
11.1
|
1.0
|
|
NB
|
A:HEC802
|
2.1
|
10.3
|
1.0
|
|
NE2
|
A:HIS198
|
2.1
|
11.0
|
1.0
|
|
CE1
|
A:HIS198
|
3.0
|
13.0
|
1.0
|
|
CE1
|
A:HIS210
|
3.0
|
9.6
|
1.0
|
|
CD2
|
A:HIS210
|
3.0
|
9.5
|
1.0
|
|
C4C
|
A:HEC802
|
3.0
|
11.1
|
1.0
|
|
C1D
|
A:HEC802
|
3.0
|
11.2
|
1.0
|
|
C4B
|
A:HEC802
|
3.0
|
9.9
|
1.0
|
|
C4A
|
A:HEC802
|
3.1
|
10.7
|
1.0
|
|
C1C
|
A:HEC802
|
3.1
|
10.6
|
1.0
|
|
C1B
|
A:HEC802
|
3.1
|
9.7
|
1.0
|
|
C4D
|
A:HEC802
|
3.1
|
11.8
|
1.0
|
|
C1A
|
A:HEC802
|
3.1
|
10.7
|
1.0
|
|
CD2
|
A:HIS198
|
3.1
|
11.9
|
1.0
|
|
CHD
|
A:HEC802
|
3.4
|
10.5
|
1.0
|
|
CHB
|
A:HEC802
|
3.4
|
9.5
|
1.0
|
|
CHC
|
A:HEC802
|
3.4
|
10.3
|
1.0
|
|
CHA
|
A:HEC802
|
3.5
|
11.5
|
1.0
|
|
ND1
|
A:HIS210
|
4.1
|
9.6
|
1.0
|
|
CG
|
A:HIS210
|
4.2
|
9.2
|
1.0
|
|
ND1
|
A:HIS198
|
4.2
|
13.6
|
1.0
|
|
CG
|
A:HIS198
|
4.2
|
12.3
|
1.0
|
|
C3C
|
A:HEC802
|
4.3
|
11.0
|
1.0
|
|
C3B
|
A:HEC802
|
4.3
|
9.8
|
1.0
|
|
C2D
|
A:HEC802
|
4.3
|
11.5
|
1.0
|
|
C2C
|
A:HEC802
|
4.3
|
10.6
|
1.0
|
|
C2B
|
A:HEC802
|
4.4
|
9.7
|
1.0
|
|
C3A
|
A:HEC802
|
4.4
|
10.4
|
1.0
|
|
C3D
|
A:HEC802
|
4.4
|
12.1
|
1.0
|
|
C2A
|
A:HEC802
|
4.4
|
10.7
|
1.0
|
|
CG
|
A:GLN199
|
4.8
|
15.6
|
1.0
|
|
Iron binding site 4 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 4 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe803
b:9.5
occ:1.00
|
FE
|
A:HEC803
|
0.0
|
9.5
|
1.0
|
|
NE2
|
A:HIS261
|
2.0
|
10.1
|
1.0
|
|
NE2
|
A:HIS230
|
2.0
|
8.6
|
1.0
|
|
NB
|
A:HEC803
|
2.0
|
8.6
|
1.0
|
|
NC
|
A:HEC803
|
2.1
|
9.5
|
1.0
|
|
NA
|
A:HEC803
|
2.1
|
9.2
|
1.0
|
|
ND
|
A:HEC803
|
2.1
|
8.7
|
1.0
|
|
CE1
|
A:HIS261
|
3.0
|
9.4
|
1.0
|
|
CD2
|
A:HIS261
|
3.0
|
10.6
|
1.0
|
|
C1B
|
A:HEC803
|
3.0
|
8.7
|
1.0
|
|
CD2
|
A:HIS230
|
3.0
|
9.6
|
1.0
|
|
CE1
|
A:HIS230
|
3.0
|
9.2
|
1.0
|
|
C4B
|
A:HEC803
|
3.0
|
8.9
|
1.0
|
|
C1C
|
A:HEC803
|
3.1
|
9.1
|
1.0
|
|
C4A
|
A:HEC803
|
3.1
|
8.6
|
1.0
|
|
C1D
|
A:HEC803
|
3.1
|
9.3
|
1.0
|
|
C4C
|
A:HEC803
|
3.1
|
9.0
|
1.0
|
|
C4D
|
A:HEC803
|
3.1
|
9.0
|
1.0
|
|
C1A
|
A:HEC803
|
3.1
|
8.7
|
1.0
|
|
CHB
|
A:HEC803
|
3.4
|
8.5
|
1.0
|
|
CHC
|
A:HEC803
|
3.4
|
8.3
|
1.0
|
|
CHD
|
A:HEC803
|
3.4
|
9.0
|
1.0
|
|
CHA
|
A:HEC803
|
3.5
|
8.7
|
1.0
|
|
ND1
|
A:HIS261
|
4.1
|
9.6
|
1.0
|
|
ND1
|
A:HIS230
|
4.2
|
8.3
|
1.0
|
|
CG
|
A:HIS261
|
4.2
|
10.5
|
1.0
|
|
CG
|
A:HIS230
|
4.2
|
9.3
|
1.0
|
|
C2B
|
A:HEC803
|
4.3
|
8.5
|
1.0
|
|
C3B
|
A:HEC803
|
4.3
|
9.0
|
1.0
|
|
C3C
|
A:HEC803
|
4.3
|
9.7
|
1.0
|
|
C2C
|
A:HEC803
|
4.4
|
9.4
|
1.0
|
|
C2D
|
A:HEC803
|
4.4
|
8.9
|
1.0
|
|
C3D
|
A:HEC803
|
4.4
|
9.2
|
1.0
|
|
C3A
|
A:HEC803
|
4.4
|
8.9
|
1.0
|
|
C2A
|
A:HEC803
|
4.4
|
8.3
|
1.0
|
|
CB
|
A:TRP273
|
4.9
|
11.1
|
1.0
|
|
CG2
|
A:ILE229
|
5.0
|
10.3
|
1.0
|
|
Iron binding site 5 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 5 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe804
b:12.1
occ:1.00
|
FE
|
A:HEC804
|
0.0
|
12.1
|
1.0
|
|
ND
|
A:HEC804
|
2.0
|
13.0
|
1.0
|
|
NE2
|
A:HIS319
|
2.0
|
10.2
|
1.0
|
|
NC
|
A:HEC804
|
2.0
|
11.0
|
1.0
|
|
NA
|
A:HEC804
|
2.0
|
12.6
|
1.0
|
|
NE2
|
A:HIS286
|
2.0
|
12.8
|
1.0
|
|
NB
|
A:HEC804
|
2.0
|
12.0
|
1.0
|
|
C1D
|
A:HEC804
|
3.0
|
12.9
|
1.0
|
|
C1A
|
A:HEC804
|
3.0
|
13.7
|
1.0
|
|
CE1
|
A:HIS286
|
3.0
|
13.7
|
1.0
|
|
C1C
|
A:HEC804
|
3.0
|
11.3
|
1.0
|
|
C4C
|
A:HEC804
|
3.0
|
11.5
|
1.0
|
|
C4D
|
A:HEC804
|
3.0
|
13.4
|
1.0
|
|
C4B
|
A:HEC804
|
3.0
|
11.7
|
1.0
|
|
CE1
|
A:HIS319
|
3.0
|
9.7
|
1.0
|
|
C4A
|
A:HEC804
|
3.0
|
13.2
|
1.0
|
|
C1B
|
A:HEC804
|
3.0
|
12.2
|
1.0
|
|
CD2
|
A:HIS319
|
3.0
|
9.9
|
1.0
|
|
CD2
|
A:HIS286
|
3.1
|
12.8
|
1.0
|
|
CHD
|
A:HEC804
|
3.4
|
11.7
|
1.0
|
|
CHA
|
A:HEC804
|
3.4
|
13.2
|
1.0
|
|
CHC
|
A:HEC804
|
3.4
|
11.4
|
1.0
|
|
CHB
|
A:HEC804
|
3.4
|
12.0
|
1.0
|
|
ND1
|
A:HIS319
|
4.1
|
9.6
|
1.0
|
|
ND1
|
A:HIS286
|
4.2
|
12.8
|
1.0
|
|
CG
|
A:HIS319
|
4.2
|
10.2
|
1.0
|
|
CG
|
A:HIS286
|
4.2
|
13.9
|
1.0
|
|
C3B
|
A:HEC804
|
4.3
|
11.2
|
1.0
|
|
C2D
|
A:HEC804
|
4.3
|
14.8
|
1.0
|
|
C3C
|
A:HEC804
|
4.3
|
11.1
|
1.0
|
|
C2C
|
A:HEC804
|
4.3
|
10.9
|
1.0
|
|
C3D
|
A:HEC804
|
4.3
|
14.9
|
1.0
|
|
C2B
|
A:HEC804
|
4.3
|
11.2
|
1.0
|
|
C2A
|
A:HEC804
|
4.4
|
14.9
|
1.0
|
|
C3A
|
A:HEC804
|
4.4
|
13.9
|
1.0
|
|
CD1
|
A:LEU318
|
4.8
|
14.1
|
1.0
|
|
CMA
|
A:HEC805
|
5.0
|
14.0
|
1.0
|
|
Iron binding site 6 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 6 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe805
b:13.9
occ:1.00
|
FE
|
A:HEC805
|
0.0
|
13.9
|
1.0
|
|
NE2
|
A:HIS310
|
2.0
|
12.7
|
1.0
|
|
NE2
|
A:HIS297
|
2.0
|
15.7
|
1.0
|
|
NC
|
A:HEC805
|
2.0
|
15.0
|
1.0
|
|
ND
|
A:HEC805
|
2.1
|
16.1
|
1.0
|
|
NB
|
A:HEC805
|
2.1
|
13.9
|
1.0
|
|
NA
|
A:HEC805
|
2.1
|
14.7
|
1.0
|
|
CE1
|
A:HIS310
|
3.0
|
12.5
|
1.0
|
|
CD2
|
A:HIS310
|
3.0
|
13.4
|
1.0
|
|
CE1
|
A:HIS297
|
3.0
|
15.8
|
1.0
|
|
C4B
|
A:HEC805
|
3.0
|
13.7
|
1.0
|
|
C1D
|
A:HEC805
|
3.0
|
16.5
|
1.0
|
|
C4C
|
A:HEC805
|
3.0
|
15.7
|
1.0
|
|
CD2
|
A:HIS297
|
3.1
|
17.0
|
1.0
|
|
C1B
|
A:HEC805
|
3.1
|
13.8
|
1.0
|
|
C1C
|
A:HEC805
|
3.1
|
14.9
|
1.0
|
|
C1A
|
A:HEC805
|
3.1
|
15.0
|
1.0
|
|
C4D
|
A:HEC805
|
3.1
|
17.1
|
1.0
|
|
C4A
|
A:HEC805
|
3.1
|
13.4
|
1.0
|
|
CHD
|
A:HEC805
|
3.4
|
15.4
|
1.0
|
|
CHA
|
A:HEC805
|
3.4
|
15.9
|
1.0
|
|
CHB
|
A:HEC805
|
3.4
|
13.5
|
1.0
|
|
CHC
|
A:HEC805
|
3.4
|
13.4
|
1.0
|
|
ND1
|
A:HIS310
|
4.0
|
12.5
|
1.0
|
|
CG
|
A:HIS310
|
4.1
|
12.9
|
1.0
|
|
ND1
|
A:HIS297
|
4.1
|
15.3
|
1.0
|
|
CG
|
A:HIS297
|
4.2
|
16.9
|
1.0
|
|
C3B
|
A:HEC805
|
4.3
|
13.9
|
1.0
|
|
C3C
|
A:HEC805
|
4.3
|
15.4
|
1.0
|
|
C2C
|
A:HEC805
|
4.3
|
14.6
|
1.0
|
|
C2D
|
A:HEC805
|
4.4
|
18.4
|
1.0
|
|
C2B
|
A:HEC805
|
4.4
|
13.7
|
1.0
|
|
C2A
|
A:HEC805
|
4.4
|
15.1
|
1.0
|
|
C3A
|
A:HEC805
|
4.4
|
14.2
|
1.0
|
|
C3D
|
A:HEC805
|
4.4
|
19.5
|
1.0
|
|
C1
|
A:EDO830
|
4.7
|
29.9
|
1.0
|
|
CE1
|
A:PHE291
|
5.0
|
19.0
|
1.0
|
|
Iron binding site 7 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 7 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe806
b:12.8
occ:1.00
|
FE
|
A:HEC806
|
0.0
|
12.8
|
1.0
|
|
NA
|
A:HEC806
|
2.0
|
12.5
|
1.0
|
|
NE2
|
A:HIS564
|
2.0
|
11.4
|
1.0
|
|
NE2
|
A:HIS500
|
2.0
|
11.0
|
1.0
|
|
NC
|
A:HEC806
|
2.0
|
12.5
|
1.0
|
|
NB
|
A:HEC806
|
2.1
|
12.5
|
1.0
|
|
ND
|
A:HEC806
|
2.1
|
12.7
|
1.0
|
|
CE1
|
A:HIS500
|
3.0
|
11.5
|
1.0
|
|
C4A
|
A:HEC806
|
3.0
|
13.7
|
1.0
|
|
CD2
|
A:HIS564
|
3.0
|
12.0
|
1.0
|
|
C1A
|
A:HEC806
|
3.0
|
13.3
|
1.0
|
|
CE1
|
A:HIS564
|
3.0
|
11.9
|
1.0
|
|
C4C
|
A:HEC806
|
3.0
|
11.9
|
1.0
|
|
C1B
|
A:HEC806
|
3.0
|
11.7
|
1.0
|
|
C4B
|
A:HEC806
|
3.0
|
11.2
|
1.0
|
|
CD2
|
A:HIS500
|
3.0
|
10.2
|
1.0
|
|
C4D
|
A:HEC806
|
3.1
|
12.6
|
1.0
|
|
C1D
|
A:HEC806
|
3.1
|
12.1
|
1.0
|
|
C1C
|
A:HEC806
|
3.1
|
11.5
|
1.0
|
|
CHB
|
A:HEC806
|
3.4
|
12.3
|
1.0
|
|
CHD
|
A:HEC806
|
3.4
|
11.9
|
1.0
|
|
CHC
|
A:HEC806
|
3.4
|
11.2
|
1.0
|
|
CHA
|
A:HEC806
|
3.4
|
12.3
|
1.0
|
|
ND1
|
A:HIS500
|
4.1
|
10.5
|
1.0
|
|
ND1
|
A:HIS564
|
4.2
|
10.9
|
1.0
|
|
CG
|
A:HIS564
|
4.2
|
12.2
|
1.0
|
|
CG
|
A:HIS500
|
4.2
|
11.3
|
1.0
|
|
C2A
|
A:HEC806
|
4.3
|
14.9
|
1.0
|
|
C3C
|
A:HEC806
|
4.3
|
11.8
|
1.0
|
|
C3A
|
A:HEC806
|
4.3
|
14.3
|
1.0
|
|
C3B
|
A:HEC806
|
4.3
|
11.0
|
1.0
|
|
C2C
|
A:HEC806
|
4.4
|
11.1
|
1.0
|
|
C2B
|
A:HEC806
|
4.4
|
11.7
|
1.0
|
|
C3D
|
A:HEC806
|
4.4
|
13.2
|
1.0
|
|
C2D
|
A:HEC806
|
4.4
|
12.4
|
1.0
|
|
Iron binding site 8 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 8 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe807
b:12.4
occ:1.00
|
FE
|
A:HEC807
|
0.0
|
12.4
|
1.0
|
|
NE2
|
A:HIS507
|
2.0
|
13.5
|
1.0
|
|
ND
|
A:HEC807
|
2.0
|
12.3
|
1.0
|
|
NE2
|
A:HIS542
|
2.0
|
10.0
|
1.0
|
|
NB
|
A:HEC807
|
2.0
|
12.7
|
1.0
|
|
NC
|
A:HEC807
|
2.0
|
12.3
|
1.0
|
|
NA
|
A:HEC807
|
2.0
|
12.2
|
1.0
|
|
CE1
|
A:HIS507
|
2.9
|
16.2
|
1.0
|
|
C1D
|
A:HEC807
|
3.0
|
12.4
|
1.0
|
|
CE1
|
A:HIS542
|
3.0
|
11.2
|
1.0
|
|
C1B
|
A:HEC807
|
3.0
|
12.3
|
1.0
|
|
C4A
|
A:HEC807
|
3.0
|
12.1
|
1.0
|
|
C4C
|
A:HEC807
|
3.0
|
11.8
|
1.0
|
|
C4D
|
A:HEC807
|
3.0
|
13.1
|
1.0
|
|
C1A
|
A:HEC807
|
3.1
|
12.8
|
1.0
|
|
CD2
|
A:HIS542
|
3.1
|
10.1
|
1.0
|
|
CD2
|
A:HIS507
|
3.1
|
15.2
|
1.0
|
|
C1C
|
A:HEC807
|
3.1
|
12.3
|
1.0
|
|
C4B
|
A:HEC807
|
3.1
|
12.4
|
1.0
|
|
CHD
|
A:HEC807
|
3.4
|
11.6
|
1.0
|
|
CHB
|
A:HEC807
|
3.4
|
11.0
|
1.0
|
|
CHA
|
A:HEC807
|
3.4
|
12.4
|
1.0
|
|
CHC
|
A:HEC807
|
3.5
|
12.4
|
1.0
|
|
ND1
|
A:HIS507
|
4.1
|
15.8
|
1.0
|
|
ND1
|
A:HIS542
|
4.1
|
10.2
|
1.0
|
|
CG
|
A:HIS507
|
4.2
|
15.0
|
1.0
|
|
CG
|
A:HIS542
|
4.2
|
10.2
|
1.0
|
|
C2B
|
A:HEC807
|
4.3
|
12.5
|
1.0
|
|
C3B
|
A:HEC807
|
4.3
|
12.3
|
1.0
|
|
C2D
|
A:HEC807
|
4.3
|
13.2
|
1.0
|
|
C3A
|
A:HEC807
|
4.3
|
11.4
|
1.0
|
|
C3C
|
A:HEC807
|
4.3
|
11.6
|
1.0
|
|
C2A
|
A:HEC807
|
4.4
|
13.1
|
1.0
|
|
C3D
|
A:HEC807
|
4.4
|
13.6
|
1.0
|
|
C2C
|
A:HEC807
|
4.4
|
11.4
|
1.0
|
|
Iron binding site 9 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 9 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe808
b:10.0
occ:1.00
|
FE
|
A:HEC808
|
0.0
|
10.0
|
1.0
|
|
NE2
|
A:HIS561
|
2.0
|
10.1
|
1.0
|
|
NE2
|
A:HIS580
|
2.0
|
11.3
|
1.0
|
|
ND
|
A:HEC808
|
2.0
|
9.7
|
1.0
|
|
NB
|
A:HEC808
|
2.0
|
8.8
|
1.0
|
|
NA
|
A:HEC808
|
2.1
|
9.2
|
1.0
|
|
NC
|
A:HEC808
|
2.1
|
9.7
|
1.0
|
|
CE1
|
A:HIS561
|
3.0
|
10.0
|
1.0
|
|
CE1
|
A:HIS580
|
3.0
|
11.7
|
1.0
|
|
C4D
|
A:HEC808
|
3.0
|
10.3
|
1.0
|
|
CD2
|
A:HIS561
|
3.0
|
10.4
|
1.0
|
|
C1C
|
A:HEC808
|
3.0
|
10.0
|
1.0
|
|
CD2
|
A:HIS580
|
3.0
|
10.5
|
1.0
|
|
C1D
|
A:HEC808
|
3.0
|
9.7
|
1.0
|
|
C1B
|
A:HEC808
|
3.0
|
9.1
|
1.0
|
|
C4A
|
A:HEC808
|
3.0
|
9.1
|
1.0
|
|
C1A
|
A:HEC808
|
3.0
|
9.9
|
1.0
|
|
C4B
|
A:HEC808
|
3.1
|
9.7
|
1.0
|
|
C4C
|
A:HEC808
|
3.1
|
9.2
|
1.0
|
|
CHA
|
A:HEC808
|
3.4
|
10.2
|
1.0
|
|
CHC
|
A:HEC808
|
3.4
|
9.1
|
1.0
|
|
CHD
|
A:HEC808
|
3.4
|
9.7
|
1.0
|
|
CHB
|
A:HEC808
|
3.4
|
8.9
|
1.0
|
|
ND1
|
A:HIS561
|
4.1
|
10.1
|
1.0
|
|
ND1
|
A:HIS580
|
4.1
|
11.2
|
1.0
|
|
CG
|
A:HIS561
|
4.1
|
10.0
|
1.0
|
|
CG
|
A:HIS580
|
4.1
|
10.9
|
1.0
|
|
C2D
|
A:HEC808
|
4.3
|
9.8
|
1.0
|
|
C3D
|
A:HEC808
|
4.3
|
10.5
|
1.0
|
|
C3A
|
A:HEC808
|
4.3
|
9.7
|
1.0
|
|
C3C
|
A:HEC808
|
4.3
|
10.0
|
1.0
|
|
C2C
|
A:HEC808
|
4.3
|
10.0
|
1.0
|
|
C2A
|
A:HEC808
|
4.4
|
10.3
|
1.0
|
|
C2B
|
A:HEC808
|
4.4
|
9.5
|
1.0
|
|
C3B
|
A:HEC808
|
4.4
|
9.9
|
1.0
|
|
CG2
|
A:VAL491
|
4.9
|
12.9
|
0.5
|
|
O
|
A:HOH1210
|
4.9
|
9.6
|
1.0
|
|
CE1
|
A:PHE583
|
5.0
|
11.9
|
1.0
|
|
Iron binding site 10 out
of 11 in 7qth
Go back to
Iron Binding Sites List in 7qth
Iron binding site 10 out
of 11 in the Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Shewanella Oneidensis MR1 Mtrc Mutant C453A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe809
b:10.5
occ:1.00
|
FE
|
A:HEC809
|
0.0
|
10.5
|
1.0
|
|
NE2
|
A:HIS666
|
2.0
|
10.7
|
1.0
|
|
NA
|
A:HEC809
|
2.0
|
10.3
|
1.0
|
|
NC
|
A:HEC809
|
2.0
|
9.9
|
1.0
|
|
NE2
|
A:HIS618
|
2.0
|
10.4
|
1.0
|
|
NB
|
A:HEC809
|
2.0
|
9.4
|
1.0
|
|
ND
|
A:HEC809
|
2.1
|
11.0
|
1.0
|
|
CE1
|
A:HIS618
|
3.0
|
10.9
|
1.0
|
|
C1C
|
A:HEC809
|
3.0
|
9.5
|
1.0
|
|
CD2
|
A:HIS666
|
3.0
|
11.5
|
1.0
|
|
C4A
|
A:HEC809
|
3.0
|
9.9
|
1.0
|
|
CE1
|
A:HIS666
|
3.0
|
9.9
|
1.0
|
|
C4B
|
A:HEC809
|
3.0
|
10.0
|
1.0
|
|
C1A
|
A:HEC809
|
3.1
|
10.2
|
1.0
|
|
C1D
|
A:HEC809
|
3.1
|
10.2
|
1.0
|
|
C1B
|
A:HEC809
|
3.1
|
9.4
|
1.0
|
|
C4C
|
A:HEC809
|
3.1
|
10.1
|
1.0
|
|
CD2
|
A:HIS618
|
3.1
|
10.7
|
1.0
|
|
C4D
|
A:HEC809
|
3.1
|
10.8
|
1.0
|
|
CHB
|
A:HEC809
|
3.4
|
9.7
|
1.0
|
|
CHC
|
A:HEC809
|
3.4
|
9.2
|
1.0
|
|
CHA
|
A:HEC809
|
3.4
|
11.0
|
1.0
|
|
CHD
|
A:HEC809
|
3.4
|
10.6
|
1.0
|
|
ND1
|
A:HIS666
|
4.1
|
10.5
|
1.0
|
|
ND1
|
A:HIS618
|
4.1
|
11.1
|
1.0
|
|
CG
|
A:HIS666
|
4.2
|
10.8
|
1.0
|
|
CG
|
A:HIS618
|
4.2
|
10.9
|
1.0
|
|
C2C
|
A:HEC809
|
4.3
|
9.8
|
1.0
|
|
C3A
|
A:HEC809
|
4.3
|
10.0
|
1.0
|
|
C3B
|
A:HEC809
|
4.3
|
9.9
|
1.0
|
|
C2A
|
A:HEC809
|
4.3
|
10.5
|
1.0
|
|
C3C
|
A:HEC809
|
4.3
|
10.3
|
1.0
|
|
C2B
|
A:HEC809
|
4.4
|
9.9
|
1.0
|
|
C3D
|
A:HEC809
|
4.4
|
13.3
|
1.0
|
|
C2D
|
A:HEC809
|
4.4
|
12.1
|
1.0
|
|
CBB
|
A:HEC808
|
4.9
|
11.0
|
1.0
|
|
CMA
|
A:HEC810
|
5.0
|
11.9
|
1.0
|
|
Reference:
M.Norman,
M.J.Edwards,
T.A.Clarke.
An Oxygen Sensitive Switch Prevents Peroxide Formation From Extracellular Flavocytochromes in Shewanella Oneidensis To Be Published.
Page generated: Thu Aug 7 04:04:40 2025
|
