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Iron in PDB 7rmu: Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand

Protein crystallography data

The structure of Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand, PDB code: 7rmu was solved by S.Khadka, P.Li, B.V.Geisbrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.85 / 2.10
Space group P 32 1 2
Cell size a, b, c (Å), α, β, γ (°) 87.698, 87.698, 107.87, 90, 90, 120
R / Rfree (%) 17 / 21

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand (pdb code 7rmu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand, PDB code: 7rmu:

Iron binding site 1 out of 1 in 7rmu

Go back to Iron Binding Sites List in 7rmu
Iron binding site 1 out of 1 in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:50.3
occ:1.00
FE A:HEM501 0.0 50.3 1.0
NB A:HEM501 2.0 46.1 1.0
NA A:HEM501 2.1 46.9 1.0
ND A:HEM501 2.1 50.3 1.0
NC A:HEM501 2.1 48.0 1.0
NE2 A:MHS312 2.3 54.8 1.0
C4B A:HEM501 3.0 49.5 1.0
C1B A:HEM501 3.0 46.3 1.0
C4A A:HEM501 3.0 45.9 1.0
C1C A:HEM501 3.1 50.6 1.0
C1D A:HEM501 3.1 46.1 1.0
C4D A:HEM501 3.1 50.9 1.0
C1A A:HEM501 3.1 47.4 1.0
C4C A:HEM501 3.1 50.3 1.0
CE1 A:MHS312 3.2 50.5 1.0
CD2 A:MHS312 3.3 48.6 1.0
CHB A:HEM501 3.4 46.0 1.0
CHC A:HEM501 3.4 45.8 1.0
CHD A:HEM501 3.4 49.4 1.0
CHA A:HEM501 3.5 43.0 1.0
O A:HOH690 3.5 55.5 1.0
NH1 A:ARG327 4.1 50.2 1.0
C3B A:HEM501 4.2 48.1 1.0
C2B A:HEM501 4.2 46.1 1.0
C3A A:HEM501 4.3 45.0 1.0
C2C A:HEM501 4.3 50.7 1.0
C2A A:HEM501 4.3 45.0 1.0
C2D A:HEM501 4.3 45.3 1.0
C3C A:HEM501 4.3 51.8 1.0
C3D A:HEM501 4.3 48.5 1.0
ND1 A:MHS312 4.4 51.5 1.0
CG A:MHS312 4.4 44.6 1.0
CE1 A:PHE348 4.8 53.8 1.0
CD A:ARG327 4.9 45.1 1.0
CZ A:ARG327 5.0 51.0 1.0

Reference:

S.Khadka, B.Geisbrecht, P.Li. Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase with A Modified Axial Ligand To Be Published.
Page generated: Thu Aug 7 05:20:56 2025

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