Iron in PDB 7rwy: Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
Protein crystallography data
The structure of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant, PDB code: 7rwy
was solved by
A.Kakkis,
E.Golub,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.65 /
2.20
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
52.55,
82.68,
74.14,
90,
95.22,
90
|
|
R / Rfree (%)
|
20.2 /
25.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
(pdb code 7rwy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant, PDB code: 7rwy:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 1 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:32.9
occ:1.00
|
FE
|
A:HEC201
|
0.0
|
32.9
|
1.0
|
|
NE2
|
A:HIS102
|
1.8
|
32.6
|
1.0
|
|
ND
|
A:HEC201
|
2.0
|
39.4
|
1.0
|
|
NA
|
A:HEC201
|
2.0
|
42.2
|
1.0
|
|
NB
|
A:HEC201
|
2.1
|
38.7
|
1.0
|
|
NC
|
A:HEC201
|
2.1
|
34.3
|
1.0
|
|
SD
|
A:MET7
|
2.2
|
30.2
|
1.0
|
|
CE1
|
A:HIS102
|
2.7
|
39.4
|
1.0
|
|
CD2
|
A:HIS102
|
2.9
|
32.6
|
1.0
|
|
C4D
|
A:HEC201
|
3.0
|
42.8
|
1.0
|
|
C1A
|
A:HEC201
|
3.0
|
46.6
|
1.0
|
|
C4A
|
A:HEC201
|
3.0
|
42.0
|
1.0
|
|
C1D
|
A:HEC201
|
3.1
|
41.5
|
1.0
|
|
C1B
|
A:HEC201
|
3.1
|
41.2
|
1.0
|
|
C4B
|
A:HEC201
|
3.1
|
36.9
|
1.0
|
|
C1C
|
A:HEC201
|
3.1
|
33.3
|
1.0
|
|
CE
|
A:MET7
|
3.1
|
33.2
|
1.0
|
|
C4C
|
A:HEC201
|
3.2
|
37.0
|
1.0
|
|
CHA
|
A:HEC201
|
3.3
|
38.7
|
1.0
|
|
CG
|
A:MET7
|
3.4
|
47.3
|
1.0
|
|
CHB
|
A:HEC201
|
3.4
|
34.5
|
1.0
|
|
CHC
|
A:HEC201
|
3.5
|
36.1
|
1.0
|
|
CHD
|
A:HEC201
|
3.5
|
36.5
|
1.0
|
|
ND1
|
A:HIS102
|
3.9
|
38.3
|
1.0
|
|
CG
|
A:HIS102
|
4.0
|
33.5
|
1.0
|
|
CB
|
A:MET7
|
4.1
|
42.0
|
1.0
|
|
C2A
|
A:HEC201
|
4.2
|
46.3
|
1.0
|
|
C3A
|
A:HEC201
|
4.2
|
40.6
|
1.0
|
|
C3D
|
A:HEC201
|
4.2
|
44.0
|
1.0
|
|
C2D
|
A:HEC201
|
4.3
|
40.4
|
1.0
|
|
C3B
|
A:HEC201
|
4.3
|
39.6
|
1.0
|
|
C2B
|
A:HEC201
|
4.3
|
37.4
|
1.0
|
|
HHA
|
A:HEC201
|
4.3
|
46.4
|
1.0
|
|
C2C
|
A:HEC201
|
4.3
|
32.5
|
1.0
|
|
C3C
|
A:HEC201
|
4.4
|
32.1
|
1.0
|
|
HHB
|
A:HEC201
|
4.4
|
41.2
|
1.0
|
|
HHC
|
A:HEC201
|
4.5
|
43.2
|
1.0
|
|
HHD
|
A:HEC201
|
4.5
|
43.7
|
1.0
|
|
Iron binding site 2 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 2 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe202
b:33.2
occ:1.00
|
FE
|
B:HEC202
|
0.0
|
33.2
|
1.0
|
|
NE2
|
B:HIS102
|
1.8
|
28.7
|
1.0
|
|
ND
|
B:HEC202
|
2.0
|
39.5
|
1.0
|
|
NC
|
B:HEC202
|
2.0
|
38.3
|
1.0
|
|
NA
|
B:HEC202
|
2.1
|
46.2
|
1.0
|
|
NB
|
B:HEC202
|
2.2
|
34.0
|
1.0
|
|
SD
|
B:MET7
|
2.3
|
43.2
|
1.0
|
|
CE1
|
B:HIS102
|
2.7
|
34.7
|
1.0
|
|
CD2
|
B:HIS102
|
3.0
|
33.1
|
1.0
|
|
C4C
|
B:HEC202
|
3.0
|
30.7
|
1.0
|
|
C1D
|
B:HEC202
|
3.0
|
39.8
|
1.0
|
|
C1C
|
B:HEC202
|
3.0
|
35.4
|
1.0
|
|
C4D
|
B:HEC202
|
3.0
|
42.1
|
1.0
|
|
C1A
|
B:HEC202
|
3.1
|
41.8
|
1.0
|
|
C1B
|
B:HEC202
|
3.1
|
44.4
|
1.0
|
|
C4A
|
B:HEC202
|
3.1
|
45.6
|
1.0
|
|
C4B
|
B:HEC202
|
3.2
|
37.5
|
1.0
|
|
CE
|
B:MET7
|
3.2
|
33.5
|
1.0
|
|
CG
|
B:MET7
|
3.3
|
43.8
|
1.0
|
|
CHD
|
B:HEC202
|
3.3
|
42.2
|
1.0
|
|
CHA
|
B:HEC202
|
3.4
|
42.6
|
1.0
|
|
CHC
|
B:HEC202
|
3.5
|
39.6
|
1.0
|
|
CHB
|
B:HEC202
|
3.5
|
32.9
|
1.0
|
|
ND1
|
B:HIS102
|
3.9
|
28.4
|
1.0
|
|
CB
|
B:MET7
|
4.0
|
39.4
|
1.0
|
|
CG
|
B:HIS102
|
4.0
|
37.2
|
1.0
|
|
C3C
|
B:HEC202
|
4.2
|
35.6
|
1.0
|
|
C2C
|
B:HEC202
|
4.2
|
39.7
|
1.0
|
|
C2D
|
B:HEC202
|
4.2
|
41.7
|
1.0
|
|
C3D
|
B:HEC202
|
4.2
|
46.7
|
1.0
|
|
C2B
|
B:HEC202
|
4.3
|
40.2
|
1.0
|
|
HHD
|
B:HEC202
|
4.3
|
50.6
|
1.0
|
|
C3B
|
B:HEC202
|
4.3
|
36.8
|
1.0
|
|
C2A
|
B:HEC202
|
4.4
|
42.8
|
1.0
|
|
C3A
|
B:HEC202
|
4.4
|
46.5
|
1.0
|
|
HHA
|
B:HEC202
|
4.4
|
51.0
|
1.0
|
|
HHC
|
B:HEC202
|
4.4
|
47.4
|
1.0
|
|
HHB
|
B:HEC202
|
4.5
|
39.4
|
1.0
|
|
CA
|
B:MET7
|
4.8
|
36.8
|
1.0
|
|
Iron binding site 3 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 3 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:25.9
occ:1.00
|
NE2
|
B:HIS73
|
2.2
|
25.0
|
1.0
|
|
NE2
|
C:HIS59
|
2.2
|
34.5
|
1.0
|
|
NE2
|
F:HIS73
|
2.2
|
25.5
|
1.0
|
|
NE2
|
F:HIS77
|
2.3
|
36.5
|
1.0
|
|
NE2
|
C:HIS63
|
2.3
|
26.5
|
1.0
|
|
CE1
|
C:HIS59
|
2.9
|
32.9
|
1.0
|
|
CE1
|
C:HIS63
|
3.1
|
25.9
|
1.0
|
|
CD2
|
F:HIS73
|
3.1
|
28.2
|
1.0
|
|
CD2
|
B:HIS73
|
3.2
|
24.4
|
1.0
|
|
CD2
|
F:HIS77
|
3.2
|
27.6
|
1.0
|
|
CE1
|
B:HIS73
|
3.2
|
25.0
|
1.0
|
|
CE1
|
F:HIS77
|
3.3
|
36.5
|
1.0
|
|
CE1
|
F:HIS73
|
3.3
|
32.4
|
1.0
|
|
CD2
|
C:HIS59
|
3.4
|
35.1
|
1.0
|
|
CD2
|
C:HIS63
|
3.5
|
30.2
|
1.0
|
|
O
|
B:HOH326
|
3.8
|
31.7
|
1.0
|
|
ND1
|
C:HIS59
|
4.1
|
36.1
|
1.0
|
|
ND1
|
C:HIS63
|
4.3
|
28.7
|
1.0
|
|
ND1
|
B:HIS73
|
4.3
|
24.8
|
1.0
|
|
CG
|
F:HIS73
|
4.3
|
23.4
|
1.0
|
|
CG
|
B:HIS73
|
4.3
|
27.4
|
1.0
|
|
ND1
|
F:HIS73
|
4.3
|
30.0
|
1.0
|
|
ND1
|
F:HIS77
|
4.3
|
36.8
|
1.0
|
|
CG
|
F:HIS77
|
4.3
|
41.5
|
1.0
|
|
H241
|
B:1PE201
|
4.4
|
40.9
|
1.0
|
|
CG
|
C:HIS59
|
4.4
|
37.1
|
1.0
|
|
CG
|
C:HIS63
|
4.5
|
31.9
|
1.0
|
|
ND1
|
B:HIS77
|
4.8
|
30.1
|
1.0
|
|
H132
|
B:1PE201
|
4.9
|
31.9
|
1.0
|
|
Iron binding site 4 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 4 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:32.7
occ:1.00
|
O
|
C:HOH315
|
1.9
|
39.7
|
1.0
|
|
NE2
|
B:HIS59
|
1.9
|
30.4
|
1.0
|
|
NE2
|
C:HIS77
|
2.1
|
27.2
|
1.0
|
|
NE2
|
C:HIS73
|
2.5
|
19.7
|
1.0
|
|
O
|
F:HOH306
|
2.5
|
25.4
|
1.0
|
|
CE1
|
B:HIS59
|
2.6
|
28.5
|
1.0
|
|
CE1
|
C:HIS77
|
2.8
|
27.8
|
1.0
|
|
CD2
|
B:HIS59
|
3.1
|
28.6
|
1.0
|
|
CD2
|
C:HIS73
|
3.2
|
19.7
|
1.0
|
|
CD2
|
C:HIS77
|
3.4
|
25.5
|
1.0
|
|
CE1
|
C:HIS73
|
3.6
|
25.8
|
1.0
|
|
ND1
|
B:HIS59
|
3.8
|
35.0
|
1.0
|
|
O
|
B:HOH308
|
4.0
|
40.9
|
1.0
|
|
ND1
|
C:HIS77
|
4.0
|
25.9
|
1.0
|
|
CG
|
B:HIS59
|
4.1
|
36.5
|
1.0
|
|
CG
|
C:HIS77
|
4.3
|
27.1
|
1.0
|
|
CG
|
C:HIS73
|
4.4
|
21.8
|
1.0
|
|
ND1
|
C:HIS73
|
4.6
|
20.1
|
1.0
|
|
OD1
|
F:ASP60
|
4.6
|
26.6
|
1.0
|
|
CG
|
F:HIS63
|
4.7
|
20.3
|
1.0
|
|
ND1
|
F:HIS63
|
4.8
|
25.1
|
1.0
|
|
CD2
|
F:HIS63
|
4.9
|
18.0
|
1.0
|
|
CE1
|
F:HIS63
|
5.0
|
18.4
|
1.0
|
|
Iron binding site 5 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 5 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe203
b:24.1
occ:1.00
|
FE
|
C:HEC203
|
0.0
|
24.1
|
1.0
|
|
NE2
|
C:HIS102
|
1.9
|
22.1
|
1.0
|
|
ND
|
C:HEC203
|
2.0
|
35.5
|
1.0
|
|
NC
|
C:HEC203
|
2.1
|
28.5
|
1.0
|
|
SD
|
C:MET7
|
2.1
|
21.4
|
1.0
|
|
NA
|
C:HEC203
|
2.1
|
33.5
|
1.0
|
|
NB
|
C:HEC203
|
2.1
|
34.0
|
1.0
|
|
CE1
|
C:HIS102
|
2.9
|
29.1
|
1.0
|
|
CD2
|
C:HIS102
|
2.9
|
27.3
|
1.0
|
|
C1D
|
C:HEC203
|
3.0
|
41.0
|
1.0
|
|
C4D
|
C:HEC203
|
3.0
|
36.2
|
1.0
|
|
C1C
|
C:HEC203
|
3.1
|
27.0
|
1.0
|
|
C4C
|
C:HEC203
|
3.1
|
35.0
|
1.0
|
|
C1A
|
C:HEC203
|
3.1
|
30.3
|
1.0
|
|
C4A
|
C:HEC203
|
3.1
|
31.1
|
1.0
|
|
C1B
|
C:HEC203
|
3.1
|
36.0
|
1.0
|
|
C4B
|
C:HEC203
|
3.1
|
38.0
|
1.0
|
|
CE
|
C:MET7
|
3.3
|
31.9
|
1.0
|
|
CG
|
C:MET7
|
3.4
|
34.4
|
1.0
|
|
CHD
|
C:HEC203
|
3.4
|
33.0
|
1.0
|
|
CHA
|
C:HEC203
|
3.4
|
31.6
|
1.0
|
|
CHC
|
C:HEC203
|
3.5
|
27.0
|
1.0
|
|
CHB
|
C:HEC203
|
3.5
|
28.9
|
1.0
|
|
ND1
|
C:HIS102
|
4.0
|
26.9
|
1.0
|
|
CG
|
C:HIS102
|
4.0
|
27.6
|
1.0
|
|
CB
|
C:MET7
|
4.2
|
24.8
|
1.0
|
|
C2D
|
C:HEC203
|
4.2
|
36.0
|
1.0
|
|
C3D
|
C:HEC203
|
4.3
|
39.6
|
1.0
|
|
C2C
|
C:HEC203
|
4.3
|
39.2
|
1.0
|
|
C3C
|
C:HEC203
|
4.3
|
34.4
|
1.0
|
|
C2A
|
C:HEC203
|
4.3
|
35.7
|
1.0
|
|
C3A
|
C:HEC203
|
4.3
|
29.5
|
1.0
|
|
C2B
|
C:HEC203
|
4.4
|
22.5
|
1.0
|
|
C3B
|
C:HEC203
|
4.4
|
29.3
|
1.0
|
|
HHD
|
C:HEC203
|
4.4
|
39.5
|
1.0
|
|
HHA
|
C:HEC203
|
4.4
|
37.9
|
1.0
|
|
HHC
|
C:HEC203
|
4.4
|
32.4
|
1.0
|
|
HHB
|
C:HEC203
|
4.5
|
34.6
|
1.0
|
|
NH2
|
C:ARG106
|
4.9
|
34.9
|
1.0
|
|
Iron binding site 6 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 6 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:27.0
occ:1.00
|
NE2
|
E:HIS73
|
2.0
|
28.4
|
1.0
|
|
NE2
|
D:HIS59
|
2.2
|
32.2
|
1.0
|
|
NE2
|
A:HIS73
|
2.2
|
37.2
|
1.0
|
|
NE2
|
D:HIS63
|
2.3
|
36.6
|
1.0
|
|
NE2
|
E:HIS77
|
2.3
|
34.7
|
1.0
|
|
CE1
|
D:HIS63
|
3.0
|
32.5
|
1.0
|
|
CE1
|
E:HIS73
|
3.0
|
22.5
|
1.0
|
|
CD2
|
A:HIS73
|
3.0
|
28.9
|
1.0
|
|
CD2
|
E:HIS73
|
3.0
|
29.1
|
1.0
|
|
CE1
|
D:HIS59
|
3.1
|
31.8
|
1.0
|
|
CE1
|
E:HIS77
|
3.1
|
30.9
|
1.0
|
|
CD2
|
D:HIS59
|
3.2
|
34.8
|
1.0
|
|
CE1
|
A:HIS73
|
3.3
|
30.7
|
1.0
|
|
CD2
|
E:HIS77
|
3.4
|
35.2
|
1.0
|
|
CD2
|
D:HIS63
|
3.4
|
29.8
|
1.0
|
|
ND1
|
E:HIS73
|
4.1
|
37.7
|
1.0
|
|
CG
|
E:HIS73
|
4.2
|
29.2
|
1.0
|
|
ND1
|
D:HIS63
|
4.2
|
29.9
|
1.0
|
|
ND1
|
D:HIS59
|
4.2
|
35.7
|
1.0
|
|
CG
|
A:HIS73
|
4.2
|
32.1
|
1.0
|
|
ND1
|
E:HIS77
|
4.3
|
33.2
|
1.0
|
|
CG
|
D:HIS59
|
4.3
|
43.2
|
1.0
|
|
ND1
|
A:HIS73
|
4.3
|
30.8
|
1.0
|
|
H131
|
D:1PE203
|
4.4
|
46.3
|
1.0
|
|
H132
|
D:1PE203
|
4.4
|
46.3
|
1.0
|
|
CG
|
D:HIS63
|
4.4
|
33.4
|
1.0
|
|
CG
|
E:HIS77
|
4.5
|
35.6
|
1.0
|
|
H221
|
D:1PE203
|
4.5
|
45.6
|
1.0
|
|
C13
|
D:1PE203
|
4.9
|
38.7
|
1.0
|
|
Iron binding site 7 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 7 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:30.8
occ:1.00
|
O
|
D:HOH311
|
1.9
|
34.1
|
1.0
|
|
NE2
|
A:HIS59
|
2.1
|
37.2
|
1.0
|
|
NE2
|
D:HIS77
|
2.2
|
19.4
|
1.0
|
|
NE2
|
D:HIS73
|
2.3
|
21.5
|
1.0
|
|
O
|
E:HOH320
|
2.4
|
30.1
|
1.0
|
|
CE1
|
D:HIS77
|
2.9
|
24.3
|
1.0
|
|
CE1
|
A:HIS59
|
3.0
|
38.8
|
1.0
|
|
CD2
|
A:HIS59
|
3.1
|
30.9
|
1.0
|
|
CD2
|
D:HIS73
|
3.2
|
22.7
|
1.0
|
|
CE1
|
D:HIS73
|
3.3
|
29.5
|
1.0
|
|
CD2
|
D:HIS77
|
3.3
|
23.7
|
1.0
|
|
O
|
A:HOH306
|
3.4
|
45.3
|
1.0
|
|
O
|
D:HOH330
|
3.7
|
41.8
|
1.0
|
|
ND1
|
A:HIS59
|
4.1
|
44.8
|
1.0
|
|
O
|
D:HOH335
|
4.1
|
43.8
|
1.0
|
|
ND1
|
D:HIS77
|
4.1
|
22.6
|
1.0
|
|
CG
|
A:HIS59
|
4.2
|
37.0
|
1.0
|
|
CG
|
D:HIS77
|
4.4
|
22.7
|
1.0
|
|
CG
|
D:HIS73
|
4.4
|
25.8
|
1.0
|
|
ND1
|
D:HIS73
|
4.4
|
23.6
|
1.0
|
|
CG
|
E:HIS63
|
4.6
|
24.0
|
1.0
|
|
OD1
|
E:ASP60
|
4.6
|
35.3
|
1.0
|
|
CD2
|
E:HIS63
|
4.6
|
18.5
|
1.0
|
|
ND1
|
E:HIS63
|
4.9
|
21.2
|
1.0
|
|
NE2
|
E:HIS63
|
4.9
|
20.1
|
1.0
|
|
CB
|
E:HIS63
|
5.0
|
21.4
|
1.0
|
|
Iron binding site 8 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 8 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe204
b:26.3
occ:1.00
|
FE
|
D:HEC204
|
0.0
|
26.3
|
1.0
|
|
ND
|
D:HEC204
|
2.0
|
33.8
|
1.0
|
|
NA
|
D:HEC204
|
2.0
|
36.4
|
1.0
|
|
NE2
|
D:HIS102
|
2.1
|
20.0
|
1.0
|
|
NB
|
D:HEC204
|
2.1
|
28.5
|
1.0
|
|
NC
|
D:HEC204
|
2.1
|
31.2
|
1.0
|
|
SD
|
D:MET7
|
2.3
|
28.2
|
1.0
|
|
C1A
|
D:HEC204
|
3.0
|
35.5
|
1.0
|
|
C4D
|
D:HEC204
|
3.0
|
34.6
|
1.0
|
|
C4B
|
D:HEC204
|
3.0
|
33.0
|
1.0
|
|
CD2
|
D:HIS102
|
3.1
|
25.8
|
1.0
|
|
C1C
|
D:HEC204
|
3.1
|
27.8
|
1.0
|
|
C4A
|
D:HEC204
|
3.1
|
33.6
|
1.0
|
|
CE1
|
D:HIS102
|
3.1
|
33.5
|
1.0
|
|
C1D
|
D:HEC204
|
3.1
|
33.0
|
1.0
|
|
C1B
|
D:HEC204
|
3.1
|
41.1
|
1.0
|
|
C4C
|
D:HEC204
|
3.2
|
31.3
|
1.0
|
|
CHA
|
D:HEC204
|
3.3
|
29.8
|
1.0
|
|
CE
|
D:MET7
|
3.3
|
30.2
|
1.0
|
|
CHC
|
D:HEC204
|
3.4
|
28.6
|
1.0
|
|
CG
|
D:MET7
|
3.5
|
31.6
|
1.0
|
|
CHB
|
D:HEC204
|
3.5
|
29.5
|
1.0
|
|
CHD
|
D:HEC204
|
3.5
|
29.1
|
1.0
|
|
CB
|
D:MET7
|
4.1
|
29.3
|
1.0
|
|
ND1
|
D:HIS102
|
4.2
|
25.7
|
1.0
|
|
CG
|
D:HIS102
|
4.2
|
27.9
|
1.0
|
|
C2A
|
D:HEC204
|
4.2
|
43.6
|
1.0
|
|
C3D
|
D:HEC204
|
4.2
|
35.7
|
1.0
|
|
C3B
|
D:HEC204
|
4.2
|
34.9
|
1.0
|
|
C3A
|
D:HEC204
|
4.3
|
40.6
|
1.0
|
|
C2D
|
D:HEC204
|
4.3
|
33.8
|
1.0
|
|
C2B
|
D:HEC204
|
4.3
|
30.4
|
1.0
|
|
HHA
|
D:HEC204
|
4.3
|
35.7
|
1.0
|
|
C2C
|
D:HEC204
|
4.3
|
38.4
|
1.0
|
|
HHC
|
D:HEC204
|
4.4
|
34.2
|
1.0
|
|
C3C
|
D:HEC204
|
4.4
|
35.0
|
1.0
|
|
HHB
|
D:HEC204
|
4.5
|
35.3
|
1.0
|
|
HHD
|
D:HEC204
|
4.5
|
34.8
|
1.0
|
|
Iron binding site 9 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 9 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:32.3
occ:1.00
|
FE
|
E:HEC201
|
0.0
|
32.3
|
1.0
|
|
NB
|
E:HEC201
|
2.0
|
32.9
|
1.0
|
|
NA
|
E:HEC201
|
2.0
|
33.5
|
1.0
|
|
NE2
|
E:HIS102
|
2.1
|
31.7
|
1.0
|
|
NC
|
E:HEC201
|
2.1
|
28.0
|
1.0
|
|
ND
|
E:HEC201
|
2.1
|
29.0
|
1.0
|
|
SD
|
E:MET7
|
2.5
|
32.0
|
1.0
|
|
C1A
|
E:HEC201
|
3.0
|
36.8
|
1.0
|
|
C4B
|
E:HEC201
|
3.0
|
31.5
|
1.0
|
|
C4A
|
E:HEC201
|
3.0
|
37.0
|
1.0
|
|
C1B
|
E:HEC201
|
3.0
|
33.9
|
1.0
|
|
CD2
|
E:HIS102
|
3.0
|
27.3
|
1.0
|
|
CE1
|
E:HIS102
|
3.0
|
37.1
|
1.0
|
|
C1C
|
E:HEC201
|
3.1
|
24.3
|
1.0
|
|
C4D
|
E:HEC201
|
3.1
|
33.3
|
1.0
|
|
C4C
|
E:HEC201
|
3.1
|
21.5
|
1.0
|
|
C1D
|
E:HEC201
|
3.2
|
33.9
|
1.0
|
|
CHB
|
E:HEC201
|
3.4
|
35.7
|
1.0
|
|
CHA
|
E:HEC201
|
3.4
|
38.0
|
1.0
|
|
CHC
|
E:HEC201
|
3.4
|
28.8
|
1.0
|
|
CE
|
E:MET7
|
3.5
|
32.5
|
1.0
|
|
CHD
|
E:HEC201
|
3.5
|
29.7
|
1.0
|
|
CG
|
E:MET7
|
3.6
|
41.3
|
1.0
|
|
ND1
|
E:HIS102
|
4.2
|
30.6
|
1.0
|
|
CG
|
E:HIS102
|
4.2
|
30.5
|
1.0
|
|
C2A
|
E:HEC201
|
4.2
|
42.4
|
1.0
|
|
C3A
|
E:HEC201
|
4.2
|
37.1
|
1.0
|
|
C3B
|
E:HEC201
|
4.2
|
28.2
|
1.0
|
|
C2B
|
E:HEC201
|
4.2
|
32.7
|
1.0
|
|
C2C
|
E:HEC201
|
4.3
|
25.8
|
1.0
|
|
C3D
|
E:HEC201
|
4.3
|
30.8
|
1.0
|
|
C3C
|
E:HEC201
|
4.3
|
25.0
|
1.0
|
|
CB
|
E:MET7
|
4.3
|
34.0
|
1.0
|
|
HHB
|
E:HEC201
|
4.4
|
42.8
|
1.0
|
|
C2D
|
E:HEC201
|
4.4
|
28.7
|
1.0
|
|
HHA
|
E:HEC201
|
4.4
|
45.5
|
1.0
|
|
HHC
|
E:HEC201
|
4.4
|
34.4
|
1.0
|
|
HHD
|
E:HEC201
|
4.5
|
35.6
|
1.0
|
|
Iron binding site 10 out
of 10 in 7rwy
Go back to
Iron Binding Sites List in 7rwy
Iron binding site 10 out
of 10 in the Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of A Fe-Bound RIDC1 Variant in the Presence of Reductant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:34.2
occ:1.00
|
FE
|
F:HEC201
|
0.0
|
34.2
|
1.0
|
|
NE2
|
F:HIS102
|
2.0
|
38.6
|
1.0
|
|
NC
|
F:HEC201
|
2.0
|
34.7
|
1.0
|
|
NB
|
F:HEC201
|
2.0
|
37.4
|
1.0
|
|
ND
|
F:HEC201
|
2.1
|
38.6
|
1.0
|
|
NA
|
F:HEC201
|
2.1
|
46.2
|
1.0
|
|
SD
|
F:MET7
|
2.6
|
43.2
|
1.0
|
|
CE1
|
F:HIS102
|
2.8
|
39.5
|
1.0
|
|
C1C
|
F:HEC201
|
3.0
|
37.7
|
1.0
|
|
C4B
|
F:HEC201
|
3.0
|
40.8
|
1.0
|
|
C4C
|
F:HEC201
|
3.1
|
36.8
|
1.0
|
|
C4D
|
F:HEC201
|
3.1
|
46.2
|
1.0
|
|
CD2
|
F:HIS102
|
3.1
|
37.2
|
1.0
|
|
C1B
|
F:HEC201
|
3.1
|
42.3
|
1.0
|
|
C1A
|
F:HEC201
|
3.1
|
50.7
|
1.0
|
|
C1D
|
F:HEC201
|
3.1
|
48.0
|
1.0
|
|
C4A
|
F:HEC201
|
3.1
|
50.5
|
1.0
|
|
CE
|
F:MET7
|
3.4
|
41.1
|
1.0
|
|
CHC
|
F:HEC201
|
3.4
|
38.4
|
1.0
|
|
CG
|
F:MET7
|
3.4
|
53.4
|
1.0
|
|
CHD
|
F:HEC201
|
3.4
|
44.2
|
1.0
|
|
CHB
|
F:HEC201
|
3.4
|
42.8
|
1.0
|
|
CHA
|
F:HEC201
|
3.5
|
47.1
|
1.0
|
|
ND1
|
F:HIS102
|
4.0
|
38.1
|
1.0
|
|
CG
|
F:HIS102
|
4.1
|
40.1
|
1.0
|
|
C2C
|
F:HEC201
|
4.2
|
41.2
|
1.0
|
|
C3C
|
F:HEC201
|
4.3
|
34.2
|
1.0
|
|
CB
|
F:MET7
|
4.3
|
46.3
|
1.0
|
|
C3B
|
F:HEC201
|
4.3
|
40.7
|
1.0
|
|
C2B
|
F:HEC201
|
4.3
|
40.2
|
1.0
|
|
C3D
|
F:HEC201
|
4.3
|
51.4
|
1.0
|
|
C2A
|
F:HEC201
|
4.3
|
53.6
|
1.0
|
|
C3A
|
F:HEC201
|
4.3
|
55.8
|
1.0
|
|
C2D
|
F:HEC201
|
4.3
|
43.5
|
1.0
|
|
HHC
|
F:HEC201
|
4.4
|
46.0
|
1.0
|
|
HHD
|
F:HEC201
|
4.4
|
52.9
|
1.0
|
|
HHB
|
F:HEC201
|
4.4
|
51.3
|
1.0
|
|
HHA
|
F:HEC201
|
4.4
|
56.5
|
1.0
|
|
Reference:
A.Kakkis,
E.Golub.
Crystal Structure of Fe-Bound RIDC1 Variant in the Presence of Reductant To Be Published.
Page generated: Thu Aug 7 05:22:06 2025
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