Iron in PDB 7utd: The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk

All present enzymatic activity of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk:
1.12.99.6;

The structure of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk also contains other interesting chemical elements:

Magnesium	(Mg)	8 atoms
Nickel	(Ni)	8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Iron atom in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk (pdb code 7utd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 80 binding sites of Iron where determined in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk, PDB code: 7utd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe602 b:11.2 occ:1.00 FE A:FCO602 0.0 11.2 1.0 C1 A:FCO602 1.9 11.2 1.0 C3 A:FCO602 1.9 11.2 1.0 C2 A:FCO602 1.9 11.2 1.0 SG A:CYS65 2.3 7.5 1.0 SG A:CYS513 2.4 9.3 1.0 NI A:3NI601 2.7 30.8 1.0 O3 A:FCO602 2.9 11.2 1.0 N1 A:FCO602 3.0 11.2 1.0 N2 A:FCO602 3.0 11.2 1.0 CB A:CYS65 3.3 7.5 1.0 CB A:CYS513 3.5 9.3 1.0 CD A:ARG443 4.0 10.6 1.0 NE2 A:HIS69 4.2 6.2 1.0 CB A:CYS510 4.2 11.0 1.0 SG A:CYS510 4.4 11.0 1.0 CG A:PRO465 4.4 9.6 1.0 CB A:ALA441 4.5 9.4 1.0 CD A:PRO465 4.5 9.6 1.0 SG A:CYS62 4.6 7.3 1.0 CB A:CYS62 4.7 7.3 1.0 NH1 A:ARG443 4.7 10.6 1.0 CA A:CYS65 4.7 7.5 1.0 CD2 A:HIS69 4.8 6.2 1.0 CA A:CYS513 4.8 9.3 1.0 CB A:ARG443 4.9 10.6 1.0 CG A:ARG443 5.0 10.6 1.0 NE A:ARG443 5.0 10.6 1.0

Iron binding site 2 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE1 B:F3S402 0.0 20.0 1.0 SG B:CYS113 2.2 6.1 1.0 S3 B:F3S402 2.3 20.0 1.0 S1 B:F3S402 2.3 20.0 1.0 S2 B:F3S402 2.3 20.0 1.0 FE3 B:F3S402 2.6 20.0 1.0 FE4 B:F3S402 2.7 20.0 1.0 CB B:CYS113 3.1 6.1 1.0 S4 B:F3S402 3.9 20.0 1.0 N B:CYS113 3.9 6.1 1.0 ND2 B:ASN15 4.1 6.0 1.0 CA B:CYS113 4.1 6.1 1.0 SG B:CYS161 4.5 4.4 1.0 N B:CYS12 4.6 6.6 1.0 O B:GLY10 4.7 8.0 1.0 SG B:CYS12 4.7 6.6 1.0 CA B:GLY73 4.8 6.8 1.0 CA B:ALA11 4.8 7.8 1.0 N B:GLY73 4.9 6.8 1.0

Iron binding site 3 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE3 B:F3S402 0.0 20.0 1.0 SG B:CYS12 2.2 6.6 1.0 S4 B:F3S402 2.3 20.0 1.0 S1 B:F3S402 2.3 20.0 1.0 S3 B:F3S402 2.3 20.0 1.0 FE1 B:F3S402 2.6 20.0 1.0 FE4 B:F3S402 2.6 20.0 1.0 CB B:CYS12 3.3 6.6 1.0 N B:CYS12 3.6 6.6 1.0 S2 B:F3S402 3.8 20.0 1.0 CA B:CYS12 4.0 6.6 1.0 N B:GLY14 4.0 5.9 1.0 ND2 B:ASN15 4.0 6.0 1.0 NE2 A:DHI166 4.1 4.9 1.0 CA B:GLY14 4.4 5.9 1.0 C B:CYS12 4.4 6.6 1.0 N B:SER13 4.4 7.2 1.0 CG A:ARG60 4.6 5.2 1.0 SG B:CYS113 4.6 6.1 1.0 O A:ARG60 4.7 5.2 1.0 SG B:CYS161 4.7 4.4 1.0 C B:ALA11 4.7 7.8 1.0 N B:ASN15 4.7 6.0 1.0 CD2 A:DHI166 4.9 4.9 1.0 CB A:ARG60 4.9 5.2 1.0

Iron binding site 4 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe402 b:20.0 occ:1.00 FE4 B:F3S402 0.0 20.0 1.0 SG B:CYS161 2.3 4.4 1.0 S2 B:F3S402 2.3 20.0 1.0 S4 B:F3S402 2.3 20.0 1.0 S3 B:F3S402 2.3 20.0 1.0 FE3 B:F3S402 2.6 20.0 1.0 FE1 B:F3S402 2.7 20.0 1.0 CA B:CYS161 3.3 4.4 1.0 CB B:CYS161 3.3 4.4 1.0 C B:CYS161 3.8 4.4 1.0 CG A:ARG60 3.9 5.2 1.0 S1 B:F3S402 3.9 20.0 1.0 O B:CYS161 4.3 4.4 1.0 N B:PRO162 4.3 4.0 1.0 ND2 B:ASN15 4.3 6.0 1.0 SG B:CYS113 4.3 6.1 1.0 CA B:PRO162 4.4 4.0 1.0 NE2 A:DHI166 4.5 4.9 1.0 CD2 A:DHI166 4.5 4.9 1.0 SG B:CYS12 4.5 6.6 1.0 O B:GLY160 4.5 4.6 1.0 NE A:ARG60 4.6 5.2 1.0 N B:CYS161 4.7 4.4 1.0 CD A:ARG60 4.9 5.2 1.0 CB A:ARG60 4.9 5.2 1.0

Iron binding site 5 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE1 B:F3S403 0.0 20.0 1.0 SG B:CYS263 2.2 4.9 1.0 S1 B:F3S403 2.3 20.0 1.0 S2 B:F3S403 2.3 20.0 1.0 S3 B:F3S403 2.3 20.0 1.0 FE3 B:F3S403 2.6 20.0 1.0 FE4 B:F3S403 2.7 20.0 1.0 CB B:CYS263 3.2 4.9 1.0 NZ B:LYS253 3.6 3.4 1.0 N B:CYS263 3.6 4.9 1.0 S4 B:F3S403 3.8 20.0 1.0 CA B:CYS263 3.8 4.9 1.0 N B:THR264 4.2 5.3 1.0 C B:CYS263 4.3 4.9 1.0 CG2 B:THR264 4.4 5.3 1.0 SG B:CYS242 4.5 3.8 1.0 SG B:CYS260 4.6 4.0 1.0 CE B:LYS253 4.7 3.4 1.0 C B:GLY262 4.7 4.8 1.0 N B:GLY262 4.9 4.8 1.0

Iron binding site 6 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE3 B:F3S403 0.0 20.0 1.0 SG B:CYS260 2.2 4.0 1.0 S3 B:F3S403 2.3 20.0 1.0 S4 B:F3S403 2.3 20.0 1.0 S1 B:F3S403 2.3 20.0 1.0 FE1 B:F3S403 2.6 20.0 1.0 FE4 B:F3S403 2.7 20.0 1.0 CB B:CYS260 3.2 4.0 1.0 CA B:CYS260 3.6 4.0 1.0 OG1 B:THR199 3.7 4.0 1.0 N B:LEU261 3.8 4.4 1.0 N B:GLY262 3.9 4.8 1.0 S2 B:F3S403 3.9 20.0 1.0 C B:CYS260 4.1 4.0 1.0 CG2 B:THR199 4.1 4.0 1.0 N B:CYS263 4.2 4.9 1.0 NZ B:LYS253 4.4 3.4 1.0 CB B:THR199 4.5 4.0 1.0 CD B:LYS253 4.5 3.4 1.0 CA B:GLY262 4.5 4.8 1.0 CG2 B:THR238 4.6 5.0 1.0 SG B:CYS263 4.7 4.9 1.0 SG B:CYS242 4.8 3.8 1.0 C B:LEU261 4.8 4.4 1.0 C B:GLY262 4.8 4.8 1.0 CA B:LEU261 4.9 4.4 1.0 CE B:LYS253 4.9 3.4 1.0 N B:CYS260 4.9 4.0 1.0

Iron binding site 7 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe403 b:20.0 occ:1.00 FE4 B:F3S403 0.0 20.0 1.0 SG B:CYS242 2.2 3.8 1.0 S4 B:F3S403 2.3 20.0 1.0 S2 B:F3S403 2.3 20.0 1.0 S3 B:F3S403 2.3 20.0 1.0 FE1 B:F3S403 2.7 20.0 1.0 FE3 B:F3S403 2.7 20.0 1.0 CB B:CYS242 3.2 3.8 1.0 S1 B:F3S403 4.0 20.0 1.0 OG1 B:THR199 4.0 4.0 1.0 OG B:SER240 4.1 4.7 1.0 NE1 B:TRP247 4.2 4.2 1.0 NZ B:LYS253 4.4 3.4 1.0 CB B:SER240 4.4 4.7 1.0 CG2 B:THR199 4.5 4.0 1.0 CA B:CYS242 4.5 3.8 1.0 SG B:CYS263 4.6 4.9 1.0 SG B:CYS260 4.6 4.0 1.0 CH2 B:TRP167 4.7 4.8 1.0 OE1 A:GLN163 4.8 4.2 1.0 CB B:THR199 4.9 4.0 1.0 CG2 B:THR264 4.9 5.3 1.0 CE2 B:TRP247 5.0 4.2 1.0

Iron binding site 8 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE1 B:F3S404 0.0 20.0 1.0 S2 B:F3S404 2.3 20.0 1.0 S1 B:F3S404 2.3 20.0 1.0 SG B:CYS203 2.3 3.5 1.0 S3 B:F3S404 2.3 20.0 1.0 FE3 B:F3S404 2.7 20.0 1.0 FE4 B:F3S404 2.7 20.0 1.0 CB B:CYS203 3.0 3.5 1.0 S4 B:F3S404 3.9 20.0 1.0 CB B:THR254 4.0 3.4 1.0 CB B:ARG205 4.1 4.2 1.0 OG1 B:THR254 4.1 3.4 1.0 CG B:GLN200 4.4 4.2 1.0 CA B:CYS203 4.5 3.5 1.0 CG2 B:THR254 4.5 3.4 1.0 N B:ARG205 4.6 4.2 1.0 C B:ARG205 4.6 4.2 1.0 CA B:GLN200 4.6 4.2 1.0 CA B:ARG205 4.6 4.2 1.0 CD B:ARG205 4.7 4.2 1.0 SG B:CYS233 4.7 4.7 1.0 N B:VAL206 4.7 4.4 1.0 CG B:ARG205 4.7 4.2 1.0 NE2 B:GLN200 4.8 4.2 1.0 SG B:CYS226 4.9 5.3 1.0 CG2 B:VAL206 4.9 4.4 1.0 CB B:GLN200 4.9 4.2 1.0 C B:CYS203 5.0 3.5 1.0

Iron binding site 9 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE3 B:F3S404 0.0 20.0 1.0 S1 B:F3S404 2.3 20.0 1.0 SG B:CYS226 2.3 5.3 1.0 S4 B:F3S404 2.3 20.0 1.0 S3 B:F3S404 2.3 20.0 1.0 FE4 B:F3S404 2.6 20.0 1.0 FE1 B:F3S404 2.7 20.0 1.0 CB B:CYS226 3.3 5.3 1.0 N B:LEU227 3.8 5.1 1.0 S2 B:F3S404 3.9 20.0 1.0 CA B:CYS226 3.9 5.3 1.0 NE2 B:GLN200 4.1 4.2 1.0 N B:PHE228 4.2 7.0 1.0 C B:CYS226 4.2 5.3 1.0 CB B:PHE209 4.3 6.2 1.0 CD1 B:PHE209 4.3 6.2 1.0 CB B:ARG205 4.3 4.2 1.0 CB B:PHE228 4.4 7.0 1.0 O B:ARG205 4.6 4.2 1.0 SG B:CYS233 4.7 4.7 1.0 CG B:PHE209 4.7 6.2 1.0 SG B:CYS203 4.7 3.5 1.0 C B:ARG205 4.8 4.2 1.0 CA B:PHE228 4.8 7.0 1.0 CB B:CYS233 4.8 4.7 1.0 CA B:LEU227 4.8 5.1 1.0 C B:LEU227 4.9 5.1 1.0

Iron binding site 10 out of 80 in the The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The 2.19-Angstrom Cryoem Structure of the [Nife]-Hydrogenase Huc From Mycobacterium Smegmatis - Complex Minus Stalk within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe404 b:20.0 occ:1.00 FE4 B:F3S404 0.0 20.0 1.0 SG B:CYS233 2.2 4.7 1.0 S2 B:F3S404 2.3 20.0 1.0 S4 B:F3S404 2.3 20.0 1.0 S3 B:F3S404 2.3 20.0 1.0 FE3 B:F3S404 2.6 20.0 1.0 FE1 B:F3S404 2.7 20.0 1.0 CB B:CYS233 3.1 4.7 1.0 S1 B:F3S404 3.9 20.0 1.0 CG2 B:THR254 4.1 3.4 1.0 CA B:GLY235 4.1 4.7 1.0 N B:GLY235 4.2 4.7 1.0 CB B:THR254 4.4 3.4 1.0 CD B:PRO236 4.5 5.6 1.0 CA B:CYS233 4.5 4.7 1.0 SG B:CYS226 4.5 5.3 1.0 CB B:LEU227 4.6 5.1 1.0 N B:LEU227 4.7 5.1 1.0 N B:PHE228 4.7 7.0 1.0 SG B:CYS203 4.7 3.5 1.0 C B:CYS233 4.7 4.7 1.0 O B:CYS233 5.0 4.7 1.0

R.Grinter, A.Kropp, H.Venugopal, M.Senger, J.Badley, P.Cabotaje, S.T.Stripp, C.K.Barlow, M.Belousoff, G.M.Cook, R.B.Schittenhelm, S.Khalid, G.Berggren, G.Greening. An Oxygen-Insensitive, Quinone-Transporting Hydrogenase Enables Bacteria to Extract Energy From Air To Be Published.