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Iron in PDB 7vd9: 2.29 A Structure of the Human Catalase

Enzymatic activity of 2.29 A Structure of the Human Catalase

All present enzymatic activity of 2.29 A Structure of the Human Catalase:
1.11.1.6;

Iron Binding Sites:

The binding sites of Iron atom in the 2.29 A Structure of the Human Catalase (pdb code 7vd9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the 2.29 A Structure of the Human Catalase, PDB code: 7vd9:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7vd9

Go back to Iron Binding Sites List in 7vd9
Iron binding site 1 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of 2.29 A Structure of the Human Catalase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:7.8
occ:1.00
FE A:HEM601 0.0 7.8 1.0
OH A:TYR358 1.9 4.4 1.0
NB A:HEM601 2.0 4.5 1.0
NC A:HEM601 2.1 4.1 1.0
NA A:HEM601 2.1 3.9 1.0
ND A:HEM601 2.1 3.8 1.0
CZ A:TYR358 3.0 3.8 1.0
C1C A:HEM601 3.0 4.0 1.0
C4B A:HEM601 3.0 4.8 1.0
C4C A:HEM601 3.1 4.2 1.0
C1B A:HEM601 3.1 4.3 1.0
C1A A:HEM601 3.1 3.4 1.0
C1D A:HEM601 3.1 3.5 1.0
C4D A:HEM601 3.1 3.2 1.0
C4A A:HEM601 3.1 3.6 1.0
CHC A:HEM601 3.4 5.1 1.0
CHA A:HEM601 3.4 3.0 1.0
CHD A:HEM601 3.4 3.7 1.0
CHB A:HEM601 3.5 4.2 1.0
CE1 A:TYR358 3.7 4.3 1.0
CE2 A:TYR358 3.9 3.5 1.0
NE A:ARG354 4.2 4.8 1.0
C2C A:HEM601 4.2 4.6 1.0
C3C A:HEM601 4.3 4.6 1.0
C3B A:HEM601 4.3 5.6 1.0
C2B A:HEM601 4.3 4.7 1.0
C2A A:HEM601 4.3 3.9 1.0
C3A A:HEM601 4.3 4.0 1.0
C2D A:HEM601 4.3 3.5 1.0
C3D A:HEM601 4.3 3.1 1.0
CZ A:PHE161 4.4 5.1 1.0
NH2 A:ARG354 4.5 4.8 1.0
CZ A:ARG354 4.7 5.0 1.0
CG2 A:VAL74 4.7 3.4 1.0
CE1 A:PHE161 4.9 5.4 1.0
CE2 A:PHE161 4.9 5.8 1.0
CD2 A:HIS75 5.0 4.1 1.0

Iron binding site 2 out of 4 in 7vd9

Go back to Iron Binding Sites List in 7vd9
Iron binding site 2 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of 2.29 A Structure of the Human Catalase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1201

b:7.2
occ:1.00
FE B:HEM1201 0.0 7.2 1.0
OH B:TYR358 1.9 4.1 1.0
NB B:HEM1201 2.0 4.7 1.0
NC B:HEM1201 2.1 3.8 1.0
ND B:HEM1201 2.1 3.7 1.0
NA B:HEM1201 2.1 3.8 1.0
CZ B:TYR358 3.0 3.8 1.0
C1C B:HEM1201 3.0 4.3 1.0
C4B B:HEM1201 3.0 4.8 1.0
C4C B:HEM1201 3.1 4.3 1.0
C1B B:HEM1201 3.1 4.3 1.0
C1A B:HEM1201 3.1 3.5 1.0
C1D B:HEM1201 3.1 3.3 1.0
C4D B:HEM1201 3.1 3.2 1.0
C4A B:HEM1201 3.1 3.8 1.0
CHC B:HEM1201 3.4 5.2 1.0
CHA B:HEM1201 3.4 2.9 1.0
CHD B:HEM1201 3.4 3.9 1.0
CHB B:HEM1201 3.5 4.5 1.0
CE1 B:TYR358 3.8 4.2 1.0
CE2 B:TYR358 3.9 3.4 1.0
NE B:ARG354 4.2 4.6 1.0
C2C B:HEM1201 4.2 4.6 1.0
C3C B:HEM1201 4.3 4.8 1.0
C3B B:HEM1201 4.3 5.3 1.0
C2B B:HEM1201 4.3 4.5 1.0
C2D B:HEM1201 4.3 3.7 1.0
C2A B:HEM1201 4.3 4.0 1.0
C3A B:HEM1201 4.3 4.1 1.0
C3D B:HEM1201 4.3 3.2 1.0
CZ B:PHE161 4.4 5.3 1.0
NH2 B:ARG354 4.5 4.7 1.0
CZ B:ARG354 4.7 4.7 1.0
CG2 B:VAL74 4.7 3.5 1.0
CE1 B:PHE161 5.0 5.3 1.0

Iron binding site 3 out of 4 in 7vd9

Go back to Iron Binding Sites List in 7vd9
Iron binding site 3 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of 2.29 A Structure of the Human Catalase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe601

b:6.6
occ:1.00
FE C:HEM601 0.0 6.6 1.0
OH C:TYR358 1.9 4.7 1.0
NB C:HEM601 2.0 4.5 1.0
NC C:HEM601 2.1 4.1 1.0
ND C:HEM601 2.1 3.7 1.0
NA C:HEM601 2.1 3.9 1.0
CZ C:TYR358 3.0 4.0 1.0
C1C C:HEM601 3.0 4.3 1.0
C4B C:HEM601 3.0 4.9 1.0
C4C C:HEM601 3.1 4.3 1.0
C1B C:HEM601 3.1 4.5 1.0
C1A C:HEM601 3.1 3.3 1.0
C1D C:HEM601 3.1 3.5 1.0
C4D C:HEM601 3.1 3.2 1.0
C4A C:HEM601 3.1 3.8 1.0
CHC C:HEM601 3.4 5.2 1.0
CHA C:HEM601 3.4 3.0 1.0
CHD C:HEM601 3.4 3.8 1.0
CHB C:HEM601 3.5 4.6 1.0
CE1 C:TYR358 3.7 4.2 1.0
CE2 C:TYR358 3.9 3.6 1.0
NE C:ARG354 4.2 5.6 1.0
C2C C:HEM601 4.2 4.8 1.0
C3C C:HEM601 4.3 4.8 1.0
C3B C:HEM601 4.3 5.8 1.0
C2B C:HEM601 4.3 4.6 1.0
C3A C:HEM601 4.3 3.9 1.0
C2A C:HEM601 4.3 3.8 1.0
C2D C:HEM601 4.3 3.6 1.0
C3D C:HEM601 4.3 3.1 1.0
CZ C:PHE161 4.4 5.1 1.0
NH2 C:ARG354 4.5 5.0 1.0
CG2 C:VAL74 4.7 3.3 1.0
CZ C:ARG354 4.7 5.0 1.0
CE1 C:PHE161 4.9 5.3 1.0
CE2 C:PHE161 5.0 5.6 1.0
CD2 C:HIS75 5.0 4.2 1.0
NE2 C:HIS75 5.0 4.8 1.0

Iron binding site 4 out of 4 in 7vd9

Go back to Iron Binding Sites List in 7vd9
Iron binding site 4 out of 4 in the 2.29 A Structure of the Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of 2.29 A Structure of the Human Catalase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe601

b:6.9
occ:1.00
FE D:HEM601 0.0 6.9 1.0
OH D:TYR358 1.9 4.6 1.0
NB D:HEM601 2.0 4.5 1.0
NC D:HEM601 2.1 4.2 1.0
ND D:HEM601 2.1 3.8 1.0
NA D:HEM601 2.1 3.6 1.0
CZ D:TYR358 3.0 3.9 1.0
C1C D:HEM601 3.0 4.5 1.0
C4B D:HEM601 3.0 4.9 1.0
C4C D:HEM601 3.1 4.2 1.0
C1B D:HEM601 3.1 4.4 1.0
C1A D:HEM601 3.1 3.3 1.0
C1D D:HEM601 3.1 3.2 1.0
C4D D:HEM601 3.1 3.2 1.0
C4A D:HEM601 3.1 3.9 1.0
CHC D:HEM601 3.4 5.5 1.0
CHA D:HEM601 3.4 2.8 1.0
CHD D:HEM601 3.4 3.4 1.0
CHB D:HEM601 3.5 4.6 1.0
CE1 D:TYR358 3.7 4.5 1.0
CE2 D:TYR358 3.9 3.6 1.0
NE D:ARG354 4.2 4.9 1.0
C2C D:HEM601 4.2 4.7 1.0
C3C D:HEM601 4.3 4.7 1.0
C3B D:HEM601 4.3 5.8 1.0
C2B D:HEM601 4.3 4.7 1.0
C3A D:HEM601 4.3 4.2 1.0
C2A D:HEM601 4.3 3.9 1.0
C2D D:HEM601 4.3 3.3 1.0
C3D D:HEM601 4.3 3.0 1.0
CZ D:PHE161 4.4 5.3 1.0
NH2 D:ARG354 4.4 4.8 1.0
CZ D:ARG354 4.7 5.1 1.0
CG2 D:VAL74 4.7 3.5 1.0
CE1 D:PHE161 4.9 5.6 1.0
CE2 D:PHE161 5.0 5.6 1.0
CD2 D:HIS75 5.0 4.1 1.0

Reference:

H.Fan, B.Wang, Y.Zhang, Y.Zhu, B.Song, H.Xu, Y.Zhai, M.Qiao, F.Sun. A Cryo-Electron Microscopy Support Film Formed By 2D Crystals of Hydrophobin Hfbi. Nat Commun V. 12 7257 2021.
ISSN: ESSN 2041-1723
PubMed: 34907237
DOI: 10.1038/S41467-021-27596-8
Page generated: Fri Aug 9 05:26:21 2024

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