Iron in PDB 7vzv: Active State Ci From Q10 Dataset, Subclass 1

All present enzymatic activity of Active State Ci From Q10 Dataset, Subclass 1:
7.1.1.2;

The structure of Active State Ci From Q10 Dataset, Subclass 1 also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Magnesium	(Mg)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Active State Ci From Q10 Dataset, Subclass 1 (pdb code 7vzv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Active State Ci From Q10 Dataset, Subclass 1, PDB code: 7vzv:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:59.2 occ:1.00 FE1 A:SF4501 0.0 59.2 1.0 SG A:CYS382 2.3 67.1 1.0 S2 A:SF4501 2.3 52.4 1.0 S4 A:SF4501 2.3 66.0 1.0 S3 A:SF4501 2.3 45.5 1.0 FE3 A:SF4501 2.7 68.9 1.0 FE4 A:SF4501 2.7 69.0 1.0 FE2 A:SF4501 2.7 67.8 1.0 CB A:CYS382 3.6 43.2 1.0 CB A:CYS385 3.7 37.7 1.0 N A:CYS382 3.8 40.2 1.0 S1 A:SF4501 3.9 63.7 1.0 CA A:CYS382 4.2 42.0 1.0 N A:ILE424 4.3 50.0 1.0 CB A:ILE424 4.4 44.3 1.0 O A:CYS382 4.5 50.4 1.0 SG A:CYS385 4.5 69.0 1.0 CG1 A:ILE424 4.6 47.7 1.0 CB A:THR423 4.6 43.0 1.0 N A:GLN381 4.7 43.3 1.0 CB A:GLN381 4.7 40.4 1.0 C A:CYS382 4.7 40.2 1.0 SG A:CYS379 4.8 55.1 1.0 N A:CYS425 4.8 53.4 1.0 SG A:CYS425 4.8 72.6 1.0 C A:GLN381 4.9 43.4 1.0 CA A:ILE424 4.9 46.4 1.0 CA A:CYS385 4.9 36.0 1.0 N A:CYS385 5.0 45.9 1.0 CD1 A:ILE424 5.0 42.9 1.0

Iron binding site 2 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:67.8 occ:1.00 FE2 A:SF4501 0.0 67.8 1.0 SG A:CYS425 2.3 72.6 1.0 S4 A:SF4501 2.3 66.0 1.0 S3 A:SF4501 2.3 45.5 1.0 S1 A:SF4501 2.3 63.7 1.0 FE4 A:SF4501 2.7 69.0 1.0 FE1 A:SF4501 2.7 59.2 1.0 FE3 A:SF4501 2.7 68.9 1.0 CB A:CYS425 3.5 52.5 1.0 S2 A:SF4501 3.9 52.4 1.0 N A:CYS425 3.9 53.4 1.0 CB A:LEU427 4.1 41.4 1.0 CA A:CYS425 4.2 50.2 1.0 CG A:PRO223 4.5 47.3 1.0 CD1 A:ILE205 4.5 52.6 1.0 C A:CYS425 4.5 54.0 1.0 O A:CYS425 4.6 59.0 1.0 N A:LEU427 4.6 44.6 1.0 SG A:CYS379 4.7 55.1 1.0 SG A:CYS385 4.8 69.0 1.0 CD A:PRO223 4.8 47.7 1.0 SG A:CYS382 4.8 67.1 1.0 CB A:CYS385 4.9 37.7 1.0 CA A:LEU427 4.9 43.5 1.0 N A:GLY428 4.9 55.6 1.0

Iron binding site 3 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:68.9 occ:1.00 FE3 A:SF4501 0.0 68.9 1.0 SG A:CYS385 2.3 69.0 1.0 S4 A:SF4501 2.3 66.0 1.0 S2 A:SF4501 2.3 52.4 1.0 S1 A:SF4501 2.3 63.7 1.0 CB A:CYS385 2.7 37.7 1.0 FE1 A:SF4501 2.7 59.2 1.0 FE2 A:SF4501 2.7 67.8 1.0 FE4 A:SF4501 2.7 69.0 1.0 OG A:SER378 3.2 58.8 1.0 S3 A:SF4501 3.9 45.5 1.0 CA A:CYS385 4.2 36.0 1.0 CD2 A:LEU427 4.2 45.4 1.0 CB A:SER378 4.5 45.1 1.0 SG A:CYS382 4.5 67.1 1.0 CB A:LEU427 4.5 41.4 1.0 N A:CYS379 4.5 52.5 1.0 C A:CYS385 4.7 35.2 1.0 N A:GLY380 4.7 48.8 1.0 SG A:CYS425 4.7 72.6 1.0 CA A:SER378 4.7 42.2 1.0 SG A:CYS379 4.8 55.1 1.0 N A:ARG386 4.8 38.6 1.0 CG A:LEU427 4.9 47.0 1.0 N A:GLY428 5.0 55.6 1.0 N A:CYS385 5.0 45.9 1.0

Iron binding site 4 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:69.0 occ:1.00 FE4 A:SF4501 0.0 69.0 1.0 SG A:CYS379 2.3 55.1 1.0 S3 A:SF4501 2.3 45.5 1.0 S1 A:SF4501 2.3 63.7 1.0 S2 A:SF4501 2.3 52.4 1.0 FE2 A:SF4501 2.7 67.8 1.0 FE1 A:SF4501 2.7 59.2 1.0 FE3 A:SF4501 2.7 68.9 1.0 CB A:CYS379 3.5 46.9 1.0 N A:GLN381 3.8 43.3 1.0 N A:GLY380 3.8 48.8 1.0 S4 A:SF4501 3.9 66.0 1.0 N A:CYS379 3.9 52.5 1.0 CA A:CYS379 4.0 47.4 1.0 CB A:GLN381 4.1 40.4 1.0 C A:CYS379 4.2 49.9 1.0 CD A:PRO223 4.4 47.7 1.0 CA A:GLN381 4.5 33.8 1.0 OG A:SER378 4.7 58.8 1.0 N A:CYS382 4.7 40.2 1.0 CA A:GLY380 4.7 47.6 1.0 C A:GLY380 4.7 51.9 1.0 SG A:CYS425 4.7 72.6 1.0 SG A:CYS382 4.8 67.1 1.0 OE1 A:GLN381 4.9 40.0 1.0 SG A:CYS385 4.9 69.0 1.0 CG A:PRO223 4.9 47.3 1.0 C A:SER378 5.0 57.3 1.0

Iron binding site 5 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:46.5 occ:1.00 FE1 B:SF4301 0.0 46.5 1.0 SG B:CYS113 2.3 65.0 1.0 S2 B:SF4301 2.3 58.6 1.0 S4 B:SF4301 2.3 59.0 1.0 S3 B:SF4301 2.3 44.4 1.0 FE3 B:SF4301 2.7 58.7 1.0 FE2 B:SF4301 2.7 68.3 1.0 FE4 B:SF4301 2.7 53.8 1.0 CB B:CYS113 3.3 45.7 1.0 CA B:CYS113 3.7 36.8 1.0 N B:ILE114 3.9 31.7 1.0 S1 B:SF4301 3.9 59.9 1.0 N B:ALA115 3.9 35.5 1.0 C B:CYS113 4.2 46.1 1.0 CB B:ALA166 4.3 33.9 1.0 CE2 B:TYR145 4.5 34.5 1.0 CA B:ALA115 4.5 30.8 1.0 N B:CYS116 4.6 36.1 1.0 SG B:CYS162 4.8 49.1 1.0 SG B:CYS119 4.8 44.5 1.0 C B:ILE114 4.8 40.5 1.0 SG B:CYS116 4.9 46.0 1.0 CA B:ILE114 4.9 28.6 1.0 N B:CYS113 5.0 43.7 1.0

Iron binding site 6 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:68.3 occ:1.00 FE2 B:SF4301 0.0 68.3 1.0 SG B:CYS116 2.3 46.0 1.0 S3 B:SF4301 2.3 44.4 1.0 S1 B:SF4301 2.3 59.9 1.0 S4 B:SF4301 2.3 59.0 1.0 FE4 B:SF4301 2.7 53.8 1.0 FE1 B:SF4301 2.7 46.5 1.0 FE3 B:SF4301 2.7 58.7 1.0 N B:CYS116 3.4 36.1 1.0 CB B:CYS116 3.4 39.4 1.0 N B:LYS117 3.6 27.5 1.0 CA B:CYS116 3.8 37.9 1.0 S2 B:SF4301 3.9 58.6 1.0 C B:CYS116 4.0 40.9 1.0 N B:LEU118 4.2 28.2 1.0 CD B:PRO163 4.5 32.6 1.0 C B:ALA115 4.5 35.8 1.0 N B:ALA115 4.5 35.5 1.0 CA B:LYS117 4.6 33.1 1.0 SG B:CYS162 4.6 49.1 1.0 SG B:CYS119 4.7 44.5 1.0 CA B:ALA115 4.8 30.8 1.0 SG B:CYS113 4.8 65.0 1.0 CB B:LEU118 4.9 29.8 1.0 N B:CYS119 4.9 29.1 1.0 CG1 B:ILE114 4.9 37.1 1.0 C B:LYS117 4.9 36.9 1.0 N B:ILE114 5.0 31.7 1.0

Iron binding site 7 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:58.7 occ:1.00 FE3 B:SF4301 0.0 58.7 1.0 SG B:CYS119 2.3 44.5 1.0 S1 B:SF4301 2.3 59.9 1.0 S4 B:SF4301 2.3 59.0 1.0 S2 B:SF4301 2.3 58.6 1.0 FE1 B:SF4301 2.7 46.5 1.0 FE4 B:SF4301 2.7 53.8 1.0 FE2 B:SF4301 2.7 68.3 1.0 CB B:CYS119 3.3 34.3 1.0 S3 B:SF4301 3.9 44.4 1.0 OH B:TYR145 3.9 55.2 1.0 N B:CYS119 3.9 29.1 1.0 CE2 B:TYR145 4.1 34.5 1.0 CA B:CYS119 4.3 26.8 1.0 CD1 B:ILE130 4.3 42.9 1.0 CZ B:TYR145 4.5 41.9 1.0 CG2 B:ILE167 4.5 31.9 1.0 SG B:CYS116 4.7 46.0 1.0 N B:LYS117 4.7 27.5 1.0 SG B:CYS113 4.7 65.0 1.0 N B:LEU118 4.7 28.2 1.0 SG B:CYS162 4.8 49.1 1.0 CA B:LYS117 4.9 33.1 1.0

Iron binding site 8 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:53.8 occ:1.00 FE4 B:SF4301 0.0 53.8 1.0 SG B:CYS162 2.3 49.1 1.0 S1 B:SF4301 2.3 59.9 1.0 S3 B:SF4301 2.3 44.4 1.0 S2 B:SF4301 2.3 58.6 1.0 FE2 B:SF4301 2.7 68.3 1.0 FE3 B:SF4301 2.7 58.7 1.0 FE1 B:SF4301 2.7 46.5 1.0 CB B:CYS162 3.3 34.2 1.0 CB B:ALA166 3.7 33.9 1.0 S4 B:SF4301 3.9 59.0 1.0 CA B:CYS162 3.9 30.5 1.0 CG2 B:ILE167 4.2 31.9 1.0 N B:ILE167 4.4 31.4 1.0 CD B:PRO163 4.4 32.6 1.0 CG2 B:VAL164 4.5 36.7 1.0 SG B:CYS116 4.5 46.0 1.0 N B:ALA166 4.6 23.6 1.0 CA B:ALA166 4.7 19.6 1.0 SG B:CYS119 4.7 44.5 1.0 C B:CYS162 4.8 40.2 1.0 SG B:CYS113 4.8 65.0 1.0 N B:PRO163 4.9 35.4 1.0 CB B:ILE167 4.9 26.9 1.0

Iron binding site 9 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:67.3 occ:1.00 FE1 B:SF4302 0.0 67.3 1.0 SG B:CYS123 2.3 55.5 1.0 S3 B:SF4302 2.3 61.3 1.0 S4 B:SF4302 2.3 37.4 1.0 S2 B:SF4302 2.3 53.2 1.0 FE2 B:SF4302 2.7 55.4 1.0 FE4 B:SF4302 2.7 61.3 1.0 FE3 B:SF4302 2.7 59.4 1.0 CB B:CYS123 3.3 28.3 1.0 CA B:CYS123 3.8 30.7 1.0 S1 B:SF4302 3.9 48.5 1.0 CD B:PRO124 4.2 21.5 1.0 CD1 B:ILE128 4.4 27.6 1.0 CG1 B:ILE128 4.5 33.9 1.0 CB B:ALA127 4.5 18.0 1.0 C B:CYS123 4.5 40.3 1.0 N B:PRO124 4.6 26.6 1.0 SG B:CYS152 4.8 50.0 1.0 SG B:CYS155 4.8 55.5 1.0 CB B:CYS158 4.8 23.5 1.0 SG B:CYS158 4.9 56.2 1.0

Iron binding site 10 out of 28 in the Active State Ci From Q10 Dataset, Subclass 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Active State Ci From Q10 Dataset, Subclass 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:55.4 occ:1.00 FE2 B:SF4302 0.0 55.4 1.0 SG B:CYS152 2.3 50.0 1.0 S1 B:SF4302 2.3 48.5 1.0 S3 B:SF4302 2.3 61.3 1.0 S4 B:SF4302 2.3 37.4 1.0 FE1 B:SF4302 2.7 67.3 1.0 FE3 B:SF4302 2.7 59.4 1.0 FE4 B:SF4302 2.7 61.3 1.0 CB B:CYS152 3.4 22.4 1.0 NE2 B:HIS101 3.6 39.5 1.0 N B:TYR154 3.7 39.2 1.0 S2 B:SF4302 3.9 53.2 1.0 N B:ILE153 3.9 37.3 1.0 CA B:CYS152 4.0 13.5 1.0 CE1 B:HIS101 4.0 41.0 1.0 CA B:TYR154 4.2 24.9 1.0 C B:CYS152 4.4 37.2 1.0 N B:CYS155 4.5 33.5 1.0 SG B:CYS123 4.7 55.5 1.0 C B:ILE153 4.7 35.0 1.0 SG B:CYS158 4.8 56.2 1.0 SG B:CYS155 4.8 55.5 1.0 CD2 B:HIS101 4.8 28.8 1.0 CA B:ILE153 4.9 31.2 1.0 C B:TYR154 4.9 40.5 1.0

J.K.Gu, M.J.Yang. Active State Ci From Q10 Dataset, Subclass 1 To Be Published.