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Iron in PDB 7w8j: Dimethylformamidase, 2X(A2B2)

Enzymatic activity of Dimethylformamidase, 2X(A2B2)

All present enzymatic activity of Dimethylformamidase, 2X(A2B2):
3.5.1.56;

Iron Binding Sites:

The binding sites of Iron atom in the Dimethylformamidase, 2X(A2B2) (pdb code 7w8j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Dimethylformamidase, 2X(A2B2), PDB code: 7w8j:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7w8j

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Iron binding site 1 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:79.2
occ:1.00
 OH A:TYR440 1.9 79.2 1.0
OH A:TYR399 1.9 79.2 1.0
OE1 A:GLU521 2.0 79.2 1.0
O A:HOH970 2.1 79.2 1.0
OE2 A:GLU521 2.1 79.2 1.0
CD A:GLU521 2.3 79.2 1.0
CZ A:TYR440 3.0 79.2 1.0
CZ A:TYR399 3.1 79.3 1.0
CE2 A:TYR440 3.6 79.2 1.0
O A:HOH905 3.7 78.8 1.0
CE2 A:TYR399 3.7 79.3 1.0
CE1 A:HIS519 3.8 79.3 1.0
CG A:GLU521 3.8 79.2 1.0
ND2 A:ASN547 4.0 79.2 1.0
CE1 A:TYR399 4.1 79.3 1.0
O A:HOH925 4.1 77.9 1.0
CE1 A:TYR440 4.1 79.2 1.0
NE2 A:HIS519 4.2 79.3 1.0
CE1 A:TYR522 4.4 79.1 1.0
OH A:TYR522 4.4 79.1 1.0
CB A:GLU521 4.6 79.2 1.0
ND1 A:HIS519 4.9 79.3 1.0
CZ A:TYR522 4.9 79.1 1.0
CD2 A:TYR440 4.9 79.2 1.0
OE2 A:GLU657 5.0 79.5 1.0

Iron binding site 2 out of 4 in 7w8j

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Iron binding site 2 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:79.1
occ:1.00
 OH C:TYR440 1.9 79.2 1.0
OH C:TYR399 1.9 79.2 1.0
OE1 C:GLU521 2.0 79.1 1.0
O C:HOH968 2.1 79.1 1.0
OE2 C:GLU521 2.1 79.1 1.0
CD C:GLU521 2.3 79.1 1.0
CZ C:TYR440 3.0 79.2 1.0
CZ C:TYR399 3.1 79.2 1.0
O C:HOH914 3.6 77.6 1.0
CE2 C:TYR440 3.6 79.2 1.0
CE2 C:TYR399 3.7 79.2 1.0
CE1 C:HIS519 3.8 79.2 1.0
CG C:GLU521 3.8 79.1 1.0
ND2 C:ASN547 4.0 79.1 1.0
CE1 C:TYR399 4.1 79.2 1.0
CE1 C:TYR440 4.1 79.2 1.0
NE2 C:HIS519 4.2 79.2 1.0
O C:HOH936 4.3 76.5 1.0
CE1 C:TYR522 4.4 79.0 1.0
OH C:TYR522 4.4 79.0 1.0
CB C:GLU521 4.6 79.1 1.0
ND1 C:HIS519 4.9 79.2 1.0
CZ C:TYR522 4.9 79.0 1.0
CD2 C:TYR440 4.9 79.2 1.0
OE2 C:GLU657 5.0 79.5 1.0

Iron binding site 3 out of 4 in 7w8j

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Iron binding site 3 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe801

b:79.1
occ:1.00
 OH E:TYR440 1.9 79.2 1.0
OH E:TYR399 1.9 79.2 1.0
OE1 E:GLU521 2.0 79.1 1.0
O E:HOH967 2.1 79.1 1.0
OE2 E:GLU521 2.1 79.1 1.0
CD E:GLU521 2.3 79.1 1.0
CZ E:TYR440 3.0 79.2 1.0
CZ E:TYR399 3.1 79.2 1.0
CE2 E:TYR440 3.6 79.2 1.0
O E:HOH918 3.6 78.7 1.0
CE2 E:TYR399 3.7 79.2 1.0
CE1 E:HIS519 3.8 79.2 1.0
CG E:GLU521 3.8 79.1 1.0
ND2 E:ASN547 4.0 79.1 1.0
CE1 E:TYR399 4.1 79.2 1.0
CE1 E:TYR440 4.1 79.2 1.0
NE2 E:HIS519 4.2 79.2 1.0
O E:HOH936 4.3 78.2 1.0
CE1 E:TYR522 4.4 79.0 1.0
OH E:TYR522 4.4 79.0 1.0
CB E:GLU521 4.6 79.1 1.0
ND1 E:HIS519 4.9 79.2 1.0
CZ E:TYR522 4.9 79.0 1.0
CD2 E:TYR440 4.9 79.2 1.0
OE2 E:GLU657 5.0 79.5 1.0

Iron binding site 4 out of 4 in 7w8j

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Iron binding site 4 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:79.2
occ:1.00
 OH G:TYR440 1.9 79.2 1.0
OH G:TYR399 1.9 79.2 1.0
OE1 G:GLU521 2.0 79.2 1.0
O G:HOH970 2.1 79.2 1.0
OE2 G:GLU521 2.1 79.2 1.0
CD G:GLU521 2.3 79.2 1.0
CZ G:TYR440 3.0 79.2 1.0
CZ G:TYR399 3.1 79.3 1.0
CE2 G:TYR440 3.6 79.2 1.0
O G:HOH905 3.7 78.9 1.0
CE2 G:TYR399 3.7 79.3 1.0
CE1 G:HIS519 3.8 79.3 1.0
CG G:GLU521 3.8 79.2 1.0
ND2 G:ASN547 4.0 79.2 1.0
O G:HOH914 4.1 78.0 1.0
CE1 G:TYR399 4.1 79.3 1.0
CE1 G:TYR440 4.1 79.2 1.0
NE2 G:HIS519 4.2 79.3 1.0
CE1 G:TYR522 4.4 79.1 1.0
OH G:TYR522 4.4 79.1 1.0
CB G:GLU521 4.6 79.2 1.0
ND1 G:HIS519 4.9 79.3 1.0
CZ G:TYR522 4.9 79.1 1.0
CD2 G:TYR440 4.9 79.2 1.0
OE2 G:GLU657 5.0 79.5 1.0

Reference:

C.Arya, G.Ramanathan, K.R.Vinothkumar, R.Subramanian. Dimethylformamidase with A Unique Iron Center To Be Published.
Page generated: Thu Aug 7 09:48:21 2025

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