Atomistry » Iron » PDB 7w1t-7wde » 7w8j
Atomistry »
  Iron »
    PDB 7w1t-7wde »
      7w8j »

Iron in PDB 7w8j: Dimethylformamidase, 2X(A2B2)

Enzymatic activity of Dimethylformamidase, 2X(A2B2)

All present enzymatic activity of Dimethylformamidase, 2X(A2B2):
3.5.1.56;

Iron Binding Sites:

The binding sites of Iron atom in the Dimethylformamidase, 2X(A2B2) (pdb code 7w8j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Dimethylformamidase, 2X(A2B2), PDB code: 7w8j:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 7w8j

Go back to Iron Binding Sites List in 7w8j
Iron binding site 1 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:79.2
occ:1.00
 OH A:TYR440 1.9 79.2 1.0
OH A:TYR399 1.9 79.2 1.0
OE1 A:GLU521 2.0 79.2 1.0
O A:HOH970 2.1 79.2 1.0
OE2 A:GLU521 2.1 79.2 1.0
CD A:GLU521 2.3 79.2 1.0
CZ A:TYR440 3.0 79.2 1.0
CZ A:TYR399 3.1 79.3 1.0
CE2 A:TYR440 3.6 79.2 1.0
O A:HOH905 3.7 78.8 1.0
CE2 A:TYR399 3.7 79.3 1.0
CE1 A:HIS519 3.8 79.3 1.0
CG A:GLU521 3.8 79.2 1.0
ND2 A:ASN547 4.0 79.2 1.0
CE1 A:TYR399 4.1 79.3 1.0
O A:HOH925 4.1 77.9 1.0
CE1 A:TYR440 4.1 79.2 1.0
NE2 A:HIS519 4.2 79.3 1.0
CE1 A:TYR522 4.4 79.1 1.0
OH A:TYR522 4.4 79.1 1.0
CB A:GLU521 4.6 79.2 1.0
ND1 A:HIS519 4.9 79.3 1.0
CZ A:TYR522 4.9 79.1 1.0
CD2 A:TYR440 4.9 79.2 1.0
OE2 A:GLU657 5.0 79.5 1.0

Iron binding site 2 out of 4 in 7w8j

Go back to Iron Binding Sites List in 7w8j
Iron binding site 2 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe801

b:79.1
occ:1.00
 OH C:TYR440 1.9 79.2 1.0
OH C:TYR399 1.9 79.2 1.0
OE1 C:GLU521 2.0 79.1 1.0
O C:HOH968 2.1 79.1 1.0
OE2 C:GLU521 2.1 79.1 1.0
CD C:GLU521 2.3 79.1 1.0
CZ C:TYR440 3.0 79.2 1.0
CZ C:TYR399 3.1 79.2 1.0
O C:HOH914 3.6 77.6 1.0
CE2 C:TYR440 3.6 79.2 1.0
CE2 C:TYR399 3.7 79.2 1.0
CE1 C:HIS519 3.8 79.2 1.0
CG C:GLU521 3.8 79.1 1.0
ND2 C:ASN547 4.0 79.1 1.0
CE1 C:TYR399 4.1 79.2 1.0
CE1 C:TYR440 4.1 79.2 1.0
NE2 C:HIS519 4.2 79.2 1.0
O C:HOH936 4.3 76.5 1.0
CE1 C:TYR522 4.4 79.0 1.0
OH C:TYR522 4.4 79.0 1.0
CB C:GLU521 4.6 79.1 1.0
ND1 C:HIS519 4.9 79.2 1.0
CZ C:TYR522 4.9 79.0 1.0
CD2 C:TYR440 4.9 79.2 1.0
OE2 C:GLU657 5.0 79.5 1.0

Iron binding site 3 out of 4 in 7w8j

Go back to Iron Binding Sites List in 7w8j
Iron binding site 3 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe801

b:79.1
occ:1.00
 OH E:TYR440 1.9 79.2 1.0
OH E:TYR399 1.9 79.2 1.0
OE1 E:GLU521 2.0 79.1 1.0
O E:HOH967 2.1 79.1 1.0
OE2 E:GLU521 2.1 79.1 1.0
CD E:GLU521 2.3 79.1 1.0
CZ E:TYR440 3.0 79.2 1.0
CZ E:TYR399 3.1 79.2 1.0
CE2 E:TYR440 3.6 79.2 1.0
O E:HOH918 3.6 78.7 1.0
CE2 E:TYR399 3.7 79.2 1.0
CE1 E:HIS519 3.8 79.2 1.0
CG E:GLU521 3.8 79.1 1.0
ND2 E:ASN547 4.0 79.1 1.0
CE1 E:TYR399 4.1 79.2 1.0
CE1 E:TYR440 4.1 79.2 1.0
NE2 E:HIS519 4.2 79.2 1.0
O E:HOH936 4.3 78.2 1.0
CE1 E:TYR522 4.4 79.0 1.0
OH E:TYR522 4.4 79.0 1.0
CB E:GLU521 4.6 79.1 1.0
ND1 E:HIS519 4.9 79.2 1.0
CZ E:TYR522 4.9 79.0 1.0
CD2 E:TYR440 4.9 79.2 1.0
OE2 E:GLU657 5.0 79.5 1.0

Iron binding site 4 out of 4 in 7w8j

Go back to Iron Binding Sites List in 7w8j
Iron binding site 4 out of 4 in the Dimethylformamidase, 2X(A2B2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Dimethylformamidase, 2X(A2B2) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe801

b:79.2
occ:1.00
 OH G:TYR440 1.9 79.2 1.0
OH G:TYR399 1.9 79.2 1.0
OE1 G:GLU521 2.0 79.2 1.0
O G:HOH970 2.1 79.2 1.0
OE2 G:GLU521 2.1 79.2 1.0
CD G:GLU521 2.3 79.2 1.0
CZ G:TYR440 3.0 79.2 1.0
CZ G:TYR399 3.1 79.3 1.0
CE2 G:TYR440 3.6 79.2 1.0
O G:HOH905 3.7 78.9 1.0
CE2 G:TYR399 3.7 79.3 1.0
CE1 G:HIS519 3.8 79.3 1.0
CG G:GLU521 3.8 79.2 1.0
ND2 G:ASN547 4.0 79.2 1.0
O G:HOH914 4.1 78.0 1.0
CE1 G:TYR399 4.1 79.3 1.0
CE1 G:TYR440 4.1 79.2 1.0
NE2 G:HIS519 4.2 79.3 1.0
CE1 G:TYR522 4.4 79.1 1.0
OH G:TYR522 4.4 79.1 1.0
CB G:GLU521 4.6 79.2 1.0
ND1 G:HIS519 4.9 79.3 1.0
CZ G:TYR522 4.9 79.1 1.0
CD2 G:TYR440 4.9 79.2 1.0
OE2 G:GLU657 5.0 79.5 1.0

Reference:

C.Arya, G.Ramanathan, K.R.Vinothkumar, R.Subramanian. Dimethylformamidase with A Unique Iron Center To Be Published.
Page generated: Fri Aug 9 09:56:34 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy