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Iron in PDB 7wh1: Structure of C Elegans Bcmo-2

Protein crystallography data

The structure of Structure of C Elegans Bcmo-2, PDB code: 7wh1 was solved by W.Pan, L.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.49 / 1.90
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 148.756, 148.756, 136.294, 90, 90, 90
R / Rfree (%) 15.8 / 18.6

Iron Binding Sites:

The binding sites of Iron atom in the Structure of C Elegans Bcmo-2 (pdb code 7wh1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of C Elegans Bcmo-2, PDB code: 7wh1:

Iron binding site 1 out of 1 in 7wh1

Go back to Iron Binding Sites List in 7wh1
Iron binding site 1 out of 1 in the Structure of C Elegans Bcmo-2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of C Elegans Bcmo-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:19.6
occ:1.00
N1 A:IMD610 2.0 32.9 1.0
NE2 A:HIS523 2.2 12.8 1.0
NE2 A:HIS308 2.2 17.7 1.0
NE2 A:HIS237 2.2 17.3 1.0
NE2 A:HIS175 2.3 18.6 1.0
C2 A:IMD610 2.6 33.5 1.0
CE1 A:HIS175 3.0 23.4 1.0
CD2 A:HIS523 3.1 16.6 1.0
CD2 A:HIS308 3.1 15.3 1.0
CD2 A:HIS237 3.2 11.7 1.0
CE1 A:HIS523 3.2 16.2 1.0
C5 A:IMD610 3.2 32.2 1.0
CE1 A:HIS237 3.2 16.2 1.0
CE1 A:HIS308 3.3 15.3 1.0
CD2 A:HIS175 3.4 19.8 1.0
N3 A:IMD610 3.8 40.0 1.0
C4 A:IMD610 4.1 35.0 1.0
ND1 A:HIS175 4.2 22.5 1.0
CG A:HIS523 4.2 15.1 1.0
ND1 A:HIS523 4.2 15.7 1.0
CG A:HIS308 4.3 14.1 1.0
CG A:HIS237 4.3 13.2 1.0
ND1 A:HIS237 4.3 16.6 1.0
ND1 A:HIS308 4.3 15.9 1.0
CG A:HIS175 4.4 19.9 1.0
CG1 A:VAL129 4.4 18.0 1.0

Reference:

W.Pan, Y.L.Zhou, J.Wang, H.E.Dai, X.Wang, L.Liu. Structural and Functional Analysis of Nonheme Iron Enzymes Bcmo-1 and Bcmo-2 From Caenorhabditis Elegans . Front Mol Biosci V. 9 44453 2022.
ISSN: ESSN 2296-889X
PubMed: 35223999
DOI: 10.3389/FMOLB.2022.844453
Page generated: Fri Aug 9 10:26:57 2024

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