Iron in PDB 7wsu: Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma

The binding sites of Iron atom in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma (pdb code 7wsu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma, PDB code: 7wsu:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe802 b:68.2 occ:1.00 O1 A:5ZS803 1.9 50.5 1.0 O5 A:5ZS803 2.0 50.5 1.0 N2 A:5ZS803 2.0 50.5 1.0 O7 A:5ZS803 2.1 50.5 1.0 O3 A:5ZS803 2.1 50.5 1.0 N1 A:5ZS803 2.4 50.5 1.0 C13 A:5ZS803 2.7 50.5 1.0 C9 A:5ZS803 2.7 50.5 1.0 C12 A:5ZS803 2.8 50.5 1.0 C8 A:5ZS803 2.8 50.5 1.0 C1 A:5ZS803 2.9 50.5 1.0 C10 A:5ZS803 2.9 50.5 1.0 C2 A:5ZS803 3.2 50.5 1.0 C6 A:5ZS803 3.2 50.5 1.0 C11 A:5ZS803 3.4 50.5 1.0 C7 A:5ZS803 3.4 50.5 1.0 C5 A:5ZS803 3.5 50.5 1.0 NZ A:LYS482 3.7 40.6 1.0 O6 A:5ZS803 3.9 50.5 1.0 O4 A:5ZS803 3.9 50.5 1.0 O2 A:5ZS803 4.0 50.5 1.0 C3 A:5ZS803 4.1 50.5 1.0 C4 A:5ZS803 4.5 50.5 1.0 O A:PHE130 4.6 43.2 1.0 OG A:SER136 4.7 45.7 1.0 CB A:SER136 4.8 45.7 1.0 O A:GLY76 4.9 49.6 1.0 CE A:LYS482 4.9 40.6 1.0

Iron binding site 2 out of 2 in the Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Barley Yellow Stripe 1 Transporter in Complex with Fe(III)-Pdma within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe703 b:68.2 occ:1.00 O1 B:5ZS704 1.9 50.5 1.0 O5 B:5ZS704 2.0 50.5 1.0 N2 B:5ZS704 2.0 50.5 1.0 O7 B:5ZS704 2.1 50.5 1.0 O3 B:5ZS704 2.1 50.5 1.0 N1 B:5ZS704 2.4 50.5 1.0 C13 B:5ZS704 2.7 50.5 1.0 C9 B:5ZS704 2.7 50.5 1.0 C12 B:5ZS704 2.8 50.5 1.0 C8 B:5ZS704 2.8 50.5 1.0 C1 B:5ZS704 2.9 50.5 1.0 C10 B:5ZS704 2.9 50.5 1.0 C2 B:5ZS704 3.2 50.5 1.0 C6 B:5ZS704 3.2 50.5 1.0 C11 B:5ZS704 3.4 50.5 1.0 C7 B:5ZS704 3.4 50.5 1.0 C5 B:5ZS704 3.5 50.5 1.0 NZ B:LYS482 3.7 40.6 1.0 O6 B:5ZS704 3.9 50.5 1.0 O4 B:5ZS704 3.9 50.5 1.0 O2 B:5ZS704 4.0 50.5 1.0 C3 B:5ZS704 4.1 50.5 1.0 C4 B:5ZS704 4.5 50.5 1.0 O B:PHE130 4.6 43.2 1.0 OG B:SER136 4.7 45.9 1.0 CB B:SER136 4.8 45.9 1.0 O B:GLY76 4.9 49.6 1.0 CE B:LYS482 4.9 40.6 1.0

A.Yamagata, Y.Murata, K.Namba, T.Terada, S.Fukai, M.Shirousu. Uptake Mechanism of Iron-Phytosiderophore From the Soil Based on the Structure of Yellow Stripe Transporter. Nat Commun 2022.
ISSN: ESSN 2041-1723