Iron in PDB 7y3f: Structure of the Anabaena Psi-Monomer-Isia Supercomplex

All present enzymatic activity of Structure of the Anabaena Psi-Monomer-Isia Supercomplex:
1.97.1.12;

The structure of Structure of the Anabaena Psi-Monomer-Isia Supercomplex also contains other interesting chemical elements:

Magnesium

(Mg)

156 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex (pdb code 7y3f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex, PDB code: 7y3f:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:37.7 occ:1.00 FE1 A:SF4845 0.0 37.7 1.0 SG B:CYS575 2.2 43.6 1.0 S3 A:SF4845 2.2 37.5 1.0 S4 A:SF4845 2.3 37.0 1.0 S2 A:SF4845 2.3 36.5 1.0 FE4 A:SF4845 2.7 37.4 1.0 FE2 A:SF4845 2.7 37.4 1.0 FE3 A:SF4845 2.7 37.1 1.0 CB B:CYS575 3.3 45.0 1.0 CA B:CYS575 3.7 45.4 1.0 S1 A:SF4845 3.8 37.0 1.0 CZ3 B:TRP674 3.9 40.3 1.0 CD1 A:ILE721 4.1 36.3 1.0 N B:CYS575 4.1 44.7 1.0 CE3 B:TRP674 4.6 40.7 1.0 CB B:CYS566 4.7 42.4 1.0 SG A:CYS575 4.7 37.3 1.0 CG2 A:ILE721 4.7 37.2 1.0 SG B:CYS566 4.7 40.7 1.0 SG A:CYS584 4.8 38.8 1.0 CG1 A:ILE721 4.8 36.6 1.0 NH2 A:ARG725 4.8 40.2 1.0 CH2 B:TRP674 4.9 40.9 1.0 C B:THR574 5.0 44.3 1.0

Iron binding site 2 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:37.4 occ:1.00 FE2 A:SF4845 0.0 37.4 1.0 SG A:CYS584 2.2 38.8 1.0 S3 A:SF4845 2.3 37.5 1.0 S4 A:SF4845 2.3 37.0 1.0 S1 A:SF4845 2.3 37.0 1.0 FE3 A:SF4845 2.7 37.1 1.0 FE1 A:SF4845 2.7 37.7 1.0 FE4 A:SF4845 2.7 37.4 1.0 CB A:CYS584 3.4 39.6 1.0 S2 A:SF4845 3.9 36.5 1.0 CA A:CYS584 4.0 40.0 1.0 CD1 B:ILE709 4.0 39.2 1.0 CE3 B:TRP674 4.1 40.7 1.0 CZ3 B:TRP674 4.3 40.3 1.0 N A:CYS584 4.3 39.8 1.0 CB A:CYS575 4.6 37.4 1.0 SG A:CYS575 4.6 37.3 1.0 CG1 B:ILE709 4.6 39.2 1.0 SG B:CYS566 4.6 40.7 1.0 SG B:CYS575 4.8 43.6 1.0 NH2 A:ARG725 4.9 40.2 1.0 CG2 B:ILE709 5.0 40.1 1.0

Iron binding site 3 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:37.1 occ:1.00 FE3 A:SF4845 0.0 37.1 1.0 SG A:CYS575 2.2 37.3 1.0 S1 A:SF4845 2.3 37.0 1.0 S2 A:SF4845 2.3 36.5 1.0 S4 A:SF4845 2.3 37.0 1.0 FE4 A:SF4845 2.7 37.4 1.0 FE2 A:SF4845 2.7 37.4 1.0 FE1 A:SF4845 2.7 37.7 1.0 CB A:CYS575 3.2 37.4 1.0 S3 A:SF4845 3.8 37.5 1.0 CD B:PRO569 4.4 41.8 1.0 CD1 A:ILE721 4.5 36.3 1.0 CA A:GLY577 4.5 39.5 1.0 N A:GLY577 4.5 40.0 1.0 N B:PRO569 4.5 42.5 1.0 CA A:CYS575 4.6 37.6 1.0 SG A:CYS584 4.6 38.8 1.0 SG B:CYS575 4.6 43.6 1.0 CB B:PRO569 4.7 41.8 1.0 SG B:CYS566 4.7 40.7 1.0 C A:GLY577 4.8 39.0 1.0 C B:GLY568 4.8 42.8 1.0 N A:CYS575 4.9 38.0 1.0 CA B:PRO569 4.9 42.6 1.0 O A:PRO574 5.0 38.1 1.0 CG B:PRO569 5.0 42.0 1.0

Iron binding site 4 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe845 b:37.4 occ:1.00 FE4 A:SF4845 0.0 37.4 1.0 SG B:CYS566 2.2 40.7 1.0 S1 A:SF4845 2.3 37.0 1.0 S2 A:SF4845 2.3 36.5 1.0 S3 A:SF4845 2.3 37.5 1.0 FE3 A:SF4845 2.7 37.1 1.0 FE1 A:SF4845 2.7 37.7 1.0 FE2 A:SF4845 2.7 37.4 1.0 CB B:CYS566 3.0 42.4 1.0 S4 A:SF4845 3.9 37.0 1.0 CA B:CYS566 4.5 43.0 1.0 CA B:GLY568 4.5 43.7 1.0 N B:GLY568 4.5 44.4 1.0 CD1 B:ILE709 4.5 39.2 1.0 CD A:PRO578 4.6 38.2 1.0 N A:PRO578 4.6 38.7 1.0 SG B:CYS575 4.7 43.6 1.0 SG A:CYS584 4.7 38.8 1.0 SG A:CYS575 4.8 37.3 1.0 CB A:PRO578 4.8 38.2 1.0 C B:GLY568 4.8 42.8 1.0 CA B:CYS575 4.8 45.4 1.0 N B:CYS566 4.9 42.7 1.0 CA A:PRO578 4.9 38.3 1.0 C A:GLY577 5.0 39.0 1.0 O B:PRO565 5.0 44.4 1.0

Iron binding site 5 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:40.1 occ:1.00 FE1 C:SF4101 0.0 40.1 1.0 S3 C:SF4101 2.2 40.4 1.0 SG C:CYS51 2.3 41.0 1.0 S2 C:SF4101 2.3 40.1 1.0 S4 C:SF4101 2.3 39.4 1.0 FE4 C:SF4101 2.7 40.0 1.0 FE2 C:SF4101 2.7 39.6 1.0 FE3 C:SF4101 2.8 40.0 1.0 N C:CYS51 3.5 40.4 1.0 CB C:CYS51 3.6 40.7 1.0 N C:LYS52 3.6 40.5 1.0 S1 C:SF4101 3.9 39.6 1.0 CA C:CYS51 3.9 40.4 1.0 CD C:PRO22 4.0 45.3 1.0 C C:CYS51 4.2 40.7 1.0 N C:GLY50 4.2 41.4 1.0 N C:ARG53 4.3 40.1 1.0 C C:GLY50 4.4 40.6 1.0 CG2 C:VAL49 4.4 42.6 1.0 CG C:PRO22 4.5 45.3 1.0 CA C:LYS52 4.5 40.7 1.0 CA C:GLY50 4.6 40.7 1.0 SG C:CYS48 4.6 42.2 1.0 SG C:CYS54 4.7 40.2 1.0 SG C:CYS21 4.7 41.4 1.0 N C:VAL49 4.8 42.6 1.0 C C:LYS52 4.9 40.4 1.0 CB C:ARG53 4.9 40.8 1.0

Iron binding site 6 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:39.6 occ:1.00 FE2 C:SF4101 0.0 39.6 1.0 SG C:CYS21 2.3 41.4 1.0 S4 C:SF4101 2.3 39.4 1.0 S1 C:SF4101 2.3 39.6 1.0 S3 C:SF4101 2.3 40.4 1.0 FE3 C:SF4101 2.7 40.0 1.0 FE4 C:SF4101 2.7 40.0 1.0 FE1 C:SF4101 2.7 40.1 1.0 CB C:CYS21 3.3 42.2 1.0 CA C:CYS21 3.7 42.7 1.0 S2 C:SF4101 3.9 40.1 1.0 CD C:PRO22 3.9 45.3 1.0 CG2 C:VAL25 4.0 48.3 1.0 CB C:VAL25 4.1 48.5 1.0 OG1 C:THR23 4.3 49.9 1.0 C C:CYS21 4.5 43.5 1.0 N C:PRO22 4.5 44.9 1.0 SG C:CYS51 4.6 41.0 1.0 SG C:CYS54 4.7 40.2 1.0 CD1 C:LEU26 4.8 45.4 1.0 SG C:CYS48 4.9 42.2 1.0 CG C:LEU26 4.9 45.5 1.0 N C:VAL25 4.9 49.8 1.0 CG C:PRO22 4.9 45.3 1.0 N C:CYS21 5.0 43.4 1.0 CB C:CYS54 5.0 40.4 1.0

Iron binding site 7 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:40.0 occ:1.00 FE3 C:SF4101 0.0 40.0 1.0 SG C:CYS54 2.2 40.2 1.0 S1 C:SF4101 2.3 39.6 1.0 S4 C:SF4101 2.3 39.4 1.0 S2 C:SF4101 2.3 40.1 1.0 FE2 C:SF4101 2.7 39.6 1.0 FE4 C:SF4101 2.7 40.0 1.0 FE1 C:SF4101 2.8 40.1 1.0 CB C:CYS54 3.4 40.4 1.0 CG2 C:VAL67 3.8 45.0 1.0 S3 C:SF4101 3.8 40.4 1.0 N C:CYS54 4.1 40.2 1.0 CA C:CYS54 4.3 40.3 1.0 N C:LYS52 4.5 40.5 1.0 SG C:CYS51 4.5 41.0 1.0 CA C:LYS52 4.5 40.7 1.0 N C:ARG53 4.6 40.1 1.0 SG C:CYS48 4.7 42.2 1.0 CD1 C:LEU26 4.7 45.4 1.0 SG C:CYS21 4.8 41.4 1.0 C C:LYS52 4.9 40.4 1.0 CG2 C:VAL5 4.9 47.2 1.0

Iron binding site 8 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:40.0 occ:1.00 FE4 C:SF4101 0.0 40.0 1.0 SG C:CYS48 2.2 42.2 1.0 S2 C:SF4101 2.3 40.1 1.0 S1 C:SF4101 2.3 39.6 1.0 S3 C:SF4101 2.3 40.4 1.0 FE3 C:SF4101 2.7 40.0 1.0 FE1 C:SF4101 2.7 40.1 1.0 FE2 C:SF4101 2.7 39.6 1.0 CB C:CYS48 3.3 42.9 1.0 CA C:CYS48 3.7 43.8 1.0 S4 C:SF4101 3.9 39.4 1.0 N C:GLY50 4.0 41.4 1.0 N C:VAL49 4.0 42.6 1.0 CG2 C:VAL25 4.2 48.3 1.0 C C:CYS48 4.2 43.9 1.0 CG2 C:VAL5 4.3 47.2 1.0 CA C:GLY50 4.5 40.7 1.0 CB C:VAL25 4.6 48.5 1.0 CG2 C:VAL67 4.7 45.0 1.0 SG C:CYS21 4.7 41.4 1.0 CG1 C:VAL67 4.7 45.6 1.0 CG1 C:VAL25 4.8 48.4 1.0 N C:CYS51 4.8 40.4 1.0 SG C:CYS54 4.8 40.2 1.0 SG C:CYS51 5.0 41.0 1.0

Iron binding site 9 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:43.9 occ:1.00 FE1 C:SF4102 0.0 43.9 1.0 SG C:CYS58 2.3 45.6 1.0 S3 C:SF4102 2.3 42.7 1.0 S2 C:SF4102 2.3 42.7 1.0 S4 C:SF4102 2.3 43.7 1.0 FE2 C:SF4102 2.7 43.4 1.0 FE4 C:SF4102 2.7 42.0 1.0 FE3 C:SF4102 2.7 43.0 1.0 CB C:CYS58 3.3 46.4 1.0 CA C:CYS58 3.7 46.2 1.0 CD C:PRO59 3.8 48.0 1.0 S1 C:SF4102 3.9 42.8 1.0 CB C:SER64 4.1 43.7 1.0 CG2 C:ILE65 4.4 43.1 1.0 SG C:CYS14 4.5 47.9 1.0 C C:CYS58 4.5 47.1 1.0 N C:PRO59 4.5 48.2 1.0 OG C:SER64 4.6 43.9 1.0 CG2 C:THR60 4.7 48.6 1.0 N C:ILE65 4.7 43.4 1.0 N C:SER64 4.8 45.1 1.0 SG C:CYS17 4.8 45.8 1.0 CA C:SER64 4.8 44.3 1.0 OG1 C:THR60 4.8 47.8 1.0 CB C:CYS17 4.8 47.0 1.0 N C:CYS58 4.8 45.9 1.0 SG C:CYS11 4.9 43.4 1.0 C C:SER64 4.9 43.6 1.0 CB C:ILE65 5.0 43.0 1.0 CG C:PRO59 5.0 47.6 1.0

Iron binding site 10 out of 12 in the Structure of the Anabaena Psi-Monomer-Isia Supercomplex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Anabaena Psi-Monomer-Isia Supercomplex within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:43.4 occ:1.00 FE2 C:SF4102 0.0 43.4 1.0 S4 C:SF4102 2.2 43.7 1.0 SG C:CYS17 2.3 45.8 1.0 S3 C:SF4102 2.3 42.7 1.0 S1 C:SF4102 2.3 42.8 1.0 FE1 C:SF4102 2.7 43.9 1.0 FE4 C:SF4102 2.7 42.0 1.0 FE3 C:SF4102 2.7 43.0 1.0 CB C:CYS17 3.0 47.0 1.0 N C:CYS17 3.8 47.7 1.0 S2 C:SF4102 3.9 42.7 1.0 CB C:ALA40 3.9 50.4 1.0 CA C:CYS17 4.0 46.8 1.0 SG C:CYS14 4.5 47.9 1.0 N C:GLN16 4.6 48.5 1.0 SG C:CYS11 4.7 43.4 1.0 CG2 C:ILE65 4.7 43.1 1.0 SG C:CYS58 4.8 45.6 1.0 N C:THR15 4.9 46.5 1.0 N C:VAL18 4.9 46.3 1.0 C C:GLN16 5.0 48.9 1.0 C C:CYS17 5.0 46.2 1.0 CB C:ILE65 5.0 43.0 1.0 C C:THR15 5.0 47.5 1.0

R.Nagao, K.Kato, T.Hamaguchi, Y.Ueno, N.Tsuboshita, S.Shimizu, M.Furutani, S.Ehira, Y.Nakajima, K.Kawakami, T.Suzuki, N.Dohmae, S.Akimoto, K.Yonekura, J.R.Shen. Structure of A Monomeric Photosystem I Core Associated with Iron-Stress-Induced-A Proteins From Anabaena Sp. Pcc 7120 Nat Commun V. 14 920 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-36504-1