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Iron in PDB 7y9m: Crystal Structure of P450 BM3-2F From Bacillus Megaterium

Enzymatic activity of Crystal Structure of P450 BM3-2F From Bacillus Megaterium

All present enzymatic activity of Crystal Structure of P450 BM3-2F From Bacillus Megaterium:
1.14.14.1; 1.6.2.4;

Protein crystallography data

The structure of Crystal Structure of P450 BM3-2F From Bacillus Megaterium, PDB code: 7y9m was solved by Q.Wang, L.L.Zhang, W.D.Liu, J.-W.Huang, Y.Yang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.84 / 2.16
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.767, 146.357, 62.891, 90, 97.28, 90
R / Rfree (%) 17.3 / 21.5

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of P450 BM3-2F From Bacillus Megaterium (pdb code 7y9m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of P450 BM3-2F From Bacillus Megaterium, PDB code: 7y9m:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 7y9m

Go back to Iron Binding Sites List in 7y9m
Iron binding site 1 out of 2 in the Crystal Structure of P450 BM3-2F From Bacillus Megaterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of P450 BM3-2F From Bacillus Megaterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:24.0
occ:1.00
FE A:HEM501 0.0 24.0 1.0
NB A:HEM501 2.0 28.1 1.0
ND A:HEM501 2.0 27.9 1.0
NC A:HEM501 2.0 27.9 1.0
NA A:HEM501 2.1 29.5 1.0
N3 A:IMD502 2.3 29.6 1.0
SG A:CYS400 2.4 25.1 1.0
C4 A:IMD502 3.0 27.7 1.0
C4B A:HEM501 3.0 27.5 1.0
C1C A:HEM501 3.0 25.1 1.0
C4D A:HEM501 3.0 25.5 1.0
C1A A:HEM501 3.1 29.6 1.0
C1B A:HEM501 3.1 29.3 1.0
C4C A:HEM501 3.1 24.9 1.0
C1D A:HEM501 3.1 24.3 1.0
C4A A:HEM501 3.1 28.2 1.0
CHC A:HEM501 3.3 24.8 1.0
CB A:CYS400 3.4 24.4 1.0
CHA A:HEM501 3.4 24.7 1.0
C2 A:IMD502 3.5 41.0 1.0
CHB A:HEM501 3.5 27.7 1.0
CHD A:HEM501 3.5 24.2 1.0
CA A:CYS400 4.1 26.9 1.0
C3B A:HEM501 4.2 26.3 1.0
C2C A:HEM501 4.2 30.2 1.0
C5 A:IMD502 4.2 35.0 1.0
C3D A:HEM501 4.3 26.7 1.0
C2B A:HEM501 4.3 31.8 1.0
C3C A:HEM501 4.3 27.4 1.0
C2A A:HEM501 4.3 27.9 1.0
C2D A:HEM501 4.3 28.5 1.0
C3A A:HEM501 4.3 27.3 1.0
N1 A:IMD502 4.5 37.1 1.0
C A:CYS400 4.9 25.8 1.0
N A:GLY402 4.9 26.1 1.0
O A:ALA264 4.9 28.8 1.0
N A:ILE401 5.0 26.4 1.0

Iron binding site 2 out of 2 in 7y9m

Go back to Iron Binding Sites List in 7y9m
Iron binding site 2 out of 2 in the Crystal Structure of P450 BM3-2F From Bacillus Megaterium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of P450 BM3-2F From Bacillus Megaterium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:24.0
occ:1.00
FE B:HEM501 0.0 24.0 1.0
ND B:HEM501 2.0 27.6 1.0
NC B:HEM501 2.0 27.1 1.0
NA B:HEM501 2.0 28.6 1.0
NB B:HEM501 2.1 24.5 1.0
N3 B:IMD502 2.4 34.0 1.0
SG B:CYS400 2.4 24.2 1.0
C1D B:HEM501 3.0 26.7 1.0
C4C B:HEM501 3.0 26.9 1.0
C4A B:HEM501 3.0 29.2 1.0
C4D B:HEM501 3.1 24.2 1.0
C1C B:HEM501 3.1 24.0 1.0
C1A B:HEM501 3.1 27.8 1.0
C4B B:HEM501 3.1 27.0 1.0
C1B B:HEM501 3.1 25.4 1.0
C2 B:IMD502 3.3 34.1 1.0
C4 B:IMD502 3.3 27.8 1.0
CHD B:HEM501 3.4 21.7 1.0
CB B:CYS400 3.4 27.5 1.0
CHB B:HEM501 3.4 26.0 1.0
CHA B:HEM501 3.4 25.7 1.0
CHC B:HEM501 3.5 28.2 1.0
CA B:CYS400 4.1 29.3 1.0
C2D B:HEM501 4.2 31.9 1.0
C3C B:HEM501 4.3 23.9 1.0
C2C B:HEM501 4.3 26.4 1.0
C3D B:HEM501 4.3 27.6 1.0
C3A B:HEM501 4.3 26.3 1.0
C2A B:HEM501 4.3 29.4 1.0
C3B B:HEM501 4.3 28.3 1.0
C2B B:HEM501 4.3 25.4 1.0
N1 B:IMD502 4.4 38.5 1.0
C5 B:IMD502 4.4 33.2 1.0
N B:GLY402 4.9 26.7 1.0
C B:CYS400 4.9 30.0 1.0
OG1 B:THR268 5.0 26.3 1.0

Reference:

Q.Wang, L.L.Zhang, W.D.Liu, J.-W.Huang, Y.Yang, C.-C.Chen, R.-T.Guo. Crystal Structure of P450 BM3-2F From Bacillus Megaterium To Be Published.
Page generated: Fri Aug 9 12:15:50 2024

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