Iron in PDB 7z0s: Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)

The structure of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30;

Binding sites:

The binding sites of Iron atom in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) (pdb code 7z0s). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 30 binding sites of Iron where determined in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H), PDB code: 7z0s:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe602 b:31.6 occ:1.00 FE E:FCO602 0.0 31.6 1.0 C3 E:FCO602 1.8 31.6 1.0 C2 E:FCO602 1.8 31.6 1.0 C1 E:FCO602 1.8 31.6 1.0 SG E:CYS534 2.2 30.9 1.0 SG E:CYS244 2.3 30.7 1.0 NI E:NI601 2.5 44.7 1.0 O3 E:FCO602 2.9 31.6 1.0 N2 E:FCO602 3.0 31.6 1.0 N1 E:FCO602 3.0 31.6 1.0 CB E:CYS534 3.3 30.9 1.0 CB E:CYS244 3.5 30.7 1.0 NE2 E:HIS248 3.8 27.9 1.0 CB E:CYS531 4.1 31.7 1.0 SG E:CYS531 4.1 31.7 1.0 CB E:ALA500 4.4 30.0 1.0 CB E:ALA476 4.4 31.5 1.0 CD2 E:HIS248 4.6 27.9 1.0 CE1 E:HIS248 4.6 27.9 1.0 SG E:CYS241 4.7 29.0 1.0 CA E:CYS534 4.7 30.9 1.0 N E:ALA501 4.7 30.6 1.0 CD E:ARG478 4.7 31.5 1.0 CB E:CYS241 4.8 29.0 1.0 CA E:CYS244 4.9 30.7 1.0

Iron binding site 2 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:56.5 occ:1.00 FE1 B:SF4301 0.0 56.5 1.0 S4 B:SF4301 2.3 56.5 1.0 S2 B:SF4301 2.3 56.5 1.0 S3 B:SF4301 2.3 56.5 1.0 SG B:CYS15 2.3 52.5 1.0 FE4 B:SF4301 2.7 56.5 1.0 FE3 B:SF4301 2.7 56.5 1.0 FE2 B:SF4301 2.7 56.5 1.0 N B:CYS15 3.6 52.5 1.0 CB B:CYS15 3.7 52.5 1.0 N B:HIS16 3.8 50.9 1.0 N B:THR17 3.9 49.2 1.0 S1 B:SF4301 3.9 56.5 1.0 CA B:CYS15 4.0 52.5 1.0 OG1 B:THR17 4.2 49.2 1.0 C B:CYS15 4.2 52.5 1.0 CB B:THR17 4.3 49.2 1.0 CD B:PRO160 4.3 53.2 1.0 N B:CYS18 4.5 47.1 1.0 SG B:CYS18 4.6 47.1 1.0 CA B:HIS16 4.6 50.9 1.0 CA B:THR17 4.6 49.2 1.0 N B:GLY14 4.7 53.7 1.0 C B:GLY14 4.7 53.7 1.0 C B:HIS16 4.7 50.9 1.0 CG1 B:ILE13 4.8 55.2 1.0 CG B:PRO160 4.8 53.2 1.0 SG B:CYS12 4.8 56.6 1.0 SG B:CYS159 4.9 52.1 1.0 CA B:GLY14 4.9 53.7 1.0

Iron binding site 3 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:56.5 occ:1.00 FE2 B:SF4301 0.0 56.5 1.0 S3 B:SF4301 2.3 56.5 1.0 S1 B:SF4301 2.3 56.5 1.0 S4 B:SF4301 2.3 56.5 1.0 SG B:CYS159 2.3 52.1 1.0 FE3 B:SF4301 2.7 56.5 1.0 FE1 B:SF4301 2.7 56.5 1.0 FE4 B:SF4301 2.7 56.5 1.0 CB B:CYS159 3.5 52.1 1.0 S2 B:SF4301 3.9 56.5 1.0 OG1 B:THR161 4.0 54.1 1.0 CA B:CYS159 4.0 52.1 1.0 CD B:PRO160 4.0 53.2 1.0 CB B:ALA163 4.2 53.7 1.0 CD1 B:LEU164 4.5 50.6 1.0 N B:PRO160 4.6 53.2 1.0 C B:CYS159 4.6 52.1 1.0 SG B:CYS15 4.6 52.5 1.0 N B:ALA163 4.7 53.7 1.0 SG B:CYS12 4.8 56.6 1.0 SG B:CYS18 4.9 47.1 1.0 N B:THR161 4.9 54.1 1.0 CB B:CYS12 4.9 56.6 1.0 CG B:PRO160 4.9 53.2 1.0 CA B:CYS12 5.0 56.6 1.0

Iron binding site 4 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:56.5 occ:1.00 FE3 B:SF4301 0.0 56.5 1.0 S4 B:SF4301 2.3 56.5 1.0 S2 B:SF4301 2.3 56.5 1.0 S1 B:SF4301 2.3 56.5 1.0 SG B:CYS18 2.3 47.1 1.0 FE4 B:SF4301 2.7 56.5 1.0 FE1 B:SF4301 2.7 56.5 1.0 FE2 B:SF4301 2.7 56.5 1.0 CB B:CYS18 3.2 47.1 1.0 N B:CYS18 3.9 47.1 1.0 S3 B:SF4301 3.9 56.5 1.0 CG B:PRO48 4.1 49.7 1.0 CD1 B:LEU164 4.1 50.6 1.0 CA B:CYS18 4.2 47.1 1.0 CD B:PRO48 4.5 49.7 1.0 SG B:CYS159 4.6 52.1 1.0 SG B:CYS12 4.6 56.6 1.0 N B:THR17 4.7 49.2 1.0 CG2 B:VAL39 4.8 49.7 1.0 N B:HIS16 4.9 50.9 1.0 CB B:PRO48 4.9 49.7 1.0 SG B:CYS15 4.9 52.5 1.0 CG B:LEU164 5.0 50.6 1.0

Iron binding site 5 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:56.5 occ:1.00 FE4 B:SF4301 0.0 56.5 1.0 S1 B:SF4301 2.3 56.5 1.0 S2 B:SF4301 2.3 56.5 1.0 S3 B:SF4301 2.3 56.5 1.0 SG B:CYS12 2.3 56.6 1.0 FE3 B:SF4301 2.7 56.5 1.0 FE1 B:SF4301 2.7 56.5 1.0 FE2 B:SF4301 2.7 56.5 1.0 CB B:CYS12 3.1 56.6 1.0 CA B:CYS12 3.6 56.6 1.0 N B:ILE13 3.8 55.2 1.0 N B:GLY14 3.8 53.7 1.0 S4 B:SF4301 3.9 56.5 1.0 C B:CYS12 4.1 56.6 1.0 CD B:PRO48 4.3 49.7 1.0 CA B:GLY14 4.4 53.7 1.0 N B:CYS15 4.5 52.5 1.0 SG B:CYS15 4.7 52.5 1.0 C B:ILE13 4.8 55.2 1.0 CB B:ALA163 4.8 53.7 1.0 CG B:PRO48 4.8 49.7 1.0 CA B:ILE13 4.8 55.2 1.0 SG B:CYS159 4.8 52.1 1.0 SG B:CYS18 4.8 47.1 1.0 N B:CYS12 4.9 56.6 1.0 OG1 B:THR161 5.0 54.1 1.0 C B:GLY14 5.0 53.7 1.0

Iron binding site 6 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:46.0 occ:1.00 FE1 B:SF4302 0.0 46.0 1.0 S4 B:SF4302 2.3 46.0 1.0 S3 B:SF4302 2.3 46.0 1.0 S2 B:SF4302 2.3 46.0 1.0 SG B:CYS155 2.3 47.4 1.0 FE2 B:SF4302 2.7 46.0 1.0 FE3 B:SF4302 2.7 46.0 1.0 FE4 B:SF4302 2.7 46.0 1.0 CB B:CYS155 3.2 47.4 1.0 S1 B:SF4302 3.9 46.0 1.0 N B:CYS155 4.0 47.4 1.0 CA B:CYS155 4.2 47.4 1.0 CD1 B:LEU50 4.4 43.6 1.0 CB B:CYS22 4.5 41.8 1.0 CB B:PRO153 4.5 48.3 1.0 SG B:CYS146 4.6 44.7 1.0 SG B:CYS22 4.6 41.8 1.0 CD2 B:LEU37 4.7 43.5 1.0 CD1 B:LEU37 4.7 43.5 1.0 SG B:CYS143 4.8 39.6 1.0 N B:ALA154 4.9 48.2 1.0 CA B:PRO153 5.0 48.3 1.0

Iron binding site 7 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:46.0 occ:1.00 FE2 B:SF4302 0.0 46.0 1.0 S4 B:SF4302 2.3 46.0 1.0 S3 B:SF4302 2.3 46.0 1.0 S1 B:SF4302 2.3 46.0 1.0 SG B:CYS146 2.3 44.7 1.0 FE1 B:SF4302 2.7 46.0 1.0 FE3 B:SF4302 2.7 46.0 1.0 FE4 B:SF4302 2.7 46.0 1.0 N B:CYS146 3.3 44.7 1.0 CB B:CYS146 3.6 44.7 1.0 C B:LEU145 3.6 43.7 1.0 S2 B:SF4302 3.9 46.0 1.0 CA B:LEU145 3.9 43.7 1.0 CA B:CYS146 4.0 44.7 1.0 N B:LEU145 4.2 43.7 1.0 CA B:PRO153 4.2 48.3 1.0 CB B:PRO153 4.2 48.3 1.0 O B:LEU145 4.3 43.7 1.0 CE1 B:HIS26 4.3 38.8 1.0 SG B:CYS143 4.4 39.6 1.0 N B:ALA154 4.5 48.2 1.0 SG B:CYS155 4.6 47.4 1.0 OD1 B:ASP144 4.8 41.5 1.0 NE2 B:HIS26 4.8 38.8 1.0 C B:PRO153 4.8 48.3 1.0 SG B:CYS22 4.9 41.8 1.0

Iron binding site 8 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:46.0 occ:1.00 FE3 B:SF4302 0.0 46.0 1.0 S2 B:SF4302 2.3 46.0 1.0 S1 B:SF4302 2.3 46.0 1.0 S4 B:SF4302 2.3 46.0 1.0 SG B:CYS22 2.3 41.8 1.0 FE2 B:SF4302 2.7 46.0 1.0 FE1 B:SF4302 2.7 46.0 1.0 FE4 B:SF4302 2.7 46.0 1.0 CB B:CYS22 3.1 41.8 1.0 CE1 B:HIS26 3.7 38.8 1.0 S3 B:SF4302 3.9 46.0 1.0 CA B:CYS22 4.0 41.8 1.0 CB B:ARG36 4.0 38.5 1.0 CD B:ARG36 4.1 38.5 1.0 SG B:CYS146 4.1 44.7 1.0 NE2 B:HIS26 4.5 38.8 1.0 ND1 B:HIS26 4.5 38.8 1.0 CG B:ARG36 4.7 38.5 1.0 O B:CYS22 4.8 41.8 1.0 N B:ARG36 4.8 38.5 1.0 C B:CYS22 4.8 41.8 1.0 CD2 B:LEU37 4.8 43.5 1.0 CA B:ARG36 4.8 38.5 1.0 SG B:CYS155 4.9 47.4 1.0 SG B:CYS143 4.9 39.6 1.0

Iron binding site 9 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:46.0 occ:1.00 FE4 B:SF4302 0.0 46.0 1.0 S1 B:SF4302 2.3 46.0 1.0 S3 B:SF4302 2.3 46.0 1.0 S2 B:SF4302 2.3 46.0 1.0 SG B:CYS143 2.3 39.6 1.0 FE3 B:SF4302 2.7 46.0 1.0 FE1 B:SF4302 2.7 46.0 1.0 FE2 B:SF4302 2.7 46.0 1.0 CB B:CYS143 2.9 39.6 1.0 CA B:CYS143 3.6 39.6 1.0 CD1 B:LEU50 3.8 43.6 1.0 S4 B:SF4302 3.9 46.0 1.0 N B:LEU145 4.1 43.7 1.0 C B:CYS143 4.3 39.6 1.0 CA B:LEU145 4.4 43.7 1.0 N B:ASP144 4.4 41.5 1.0 CB B:ARG36 4.5 38.5 1.0 SG B:CYS155 4.8 47.4 1.0 SG B:CYS22 4.8 41.8 1.0 O B:HOH408 4.9 42.7 1.0 N B:CYS143 4.9 39.6 1.0 SG B:CYS146 5.0 44.7 1.0 N B:CYS146 5.0 44.7 1.0

Iron binding site 10 out of 30 in the Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Escherichia Coli Formate Hydrogenlyase Complex (Anaerobic Preparation, Without Formate Dehydrogenase H) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe303 b:42.7 occ:1.00 FE1 B:SF4303 0.0 42.7 1.0 S4 B:SF4303 2.3 42.7 1.0 S3 B:SF4303 2.3 42.7 1.0 S2 B:SF4303 2.3 42.7 1.0 SG B:CYS51 2.3 42.0 1.0 FE2 B:SF4303 2.7 42.7 1.0 FE4 B:SF4303 2.7 42.7 1.0 FE3 B:SF4303 2.7 42.7 1.0 CB B:CYS51 3.4 42.0 1.0 N B:HIS53 3.8 44.6 1.0 N B:HIS52 3.8 43.8 1.0 CA B:CYS51 3.8 42.0 1.0 S1 B:SF4303 3.9 42.7 1.0 CE B:LYS142 4.1 37.3 1.0 C B:CYS51 4.2 42.0 1.0 CA B:HIS53 4.3 44.6 1.0 CB B:ALA96 4.4 39.2 1.0 SG B:CYS54 4.6 46.6 1.0 N B:CYS54 4.7 46.6 1.0 C B:HIS52 4.7 43.8 1.0 CA B:HIS52 4.7 43.8 1.0 SG B:CYS59 4.7 39.5 1.0 SG B:CYS92 4.9 41.2 1.0 NZ B:LYS142 5.0 37.3 1.0 CG1 B:VAL75 5.0 43.5 1.0

R.Steinhilper, G.Hoff, J.Heider, B.J.Murphy. Structure of the Membrane-Bound Formate Hydrogenlyase Complex From Escherichia Coli. Nat Commun V. 13 5395 2022.
ISSN: ESSN 2041-1723
PubMed: 36104349
DOI: 10.1038/S41467-022-32831-X