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Iron in PDB 7zxl: H93A Mutant of Recombinant Codh-II

Enzymatic activity of H93A Mutant of Recombinant Codh-II

All present enzymatic activity of H93A Mutant of Recombinant Codh-II:
1.2.7.4;

Protein crystallography data

The structure of H93A Mutant of Recombinant Codh-II, PDB code: 7zxl was solved by Y.Basak, J.-H.Jeoung, H.Dobbek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.16 / 1.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 112.33, 75.175, 71.354, 90, 111.3, 90
R / Rfree (%) 11.3 / 13.8

Other elements in 7zxl:

The structure of H93A Mutant of Recombinant Codh-II also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Iron atom in the H93A Mutant of Recombinant Codh-II (pdb code 7zxl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the H93A Mutant of Recombinant Codh-II, PDB code: 7zxl:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 11 in 7zxl

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Iron binding site 1 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe701

b:10.7
occ:1.00
FE1 X:SF4701 0.0 10.7 1.0
S3 X:SF4701 2.2 11.0 1.0
S4 X:SF4701 2.3 10.9 1.0
SG X:CYS56 2.3 11.1 1.0
S2 X:SF4701 2.3 10.9 1.0
FE3 X:SF4701 2.7 10.4 1.0
FE2 X:SF4701 2.7 10.8 1.0
FE4 X:SF4701 2.7 10.8 1.0
HB2 X:CYS56 2.9 13.5 1.0
CB X:CYS56 3.2 11.3 1.0
H X:ILE69 3.3 13.6 1.0
HB X:ILE69 3.5 14.5 1.0
HB3 X:CYS56 3.7 13.5 1.0
S1 X:SF4701 3.8 10.6 1.0
H X:CYS70 4.0 13.7 1.0
HB3 X:CYS48 4.0 11.7 1.0
N X:ILE69 4.0 11.3 1.0
HA2 X:GLY54 4.1 14.4 1.0
HA3 X:GLY54 4.1 14.4 1.0
H X:CYS56 4.2 13.3 1.0
HA3 X:GLY68 4.2 14.3 1.0
HD12 X:ILE69 4.3 15.6 1.0
CA X:CYS56 4.4 11.8 1.0
CB X:ILE69 4.4 12.1 1.0
N X:CYS56 4.4 11.1 1.0
HB2 X:GLN53 4.4 13.8 1.0
CA X:GLY54 4.4 12.0 1.0
N X:GLY54 4.5 12.2 1.0
H X:GLY54 4.6 14.6 1.0
HA2 X:GLY68 4.6 14.3 1.0
O X:CYS48 4.6 10.6 1.0
SG X:CYS51 4.6 11.1 1.0
SG X:CYS48 4.6 10.3 1.0
HG13 X:ILE69 4.6 15.4 1.0
N X:CYS70 4.8 11.4 1.0
CA X:GLY68 4.8 11.9 1.0
CA X:ILE69 4.8 11.6 1.0
CB X:CYS48 4.8 9.7 1.0
SG X:CYS70 4.8 11.1 1.0
HA X:CYS56 4.8 14.1 1.0
C X:GLY68 4.9 11.2 1.0
HE21 X:GLN53 4.9 17.5 1.0
CG1 X:ILE69 4.9 12.9 1.0
H X:CYS51 5.0 12.3 1.0
C X:GLN53 5.0 12.2 1.0
HB3 X:CYS70 5.0 13.5 1.0

Iron binding site 2 out of 11 in 7zxl

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Iron binding site 2 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe701

b:10.8
occ:1.00
FE2 X:SF4701 0.0 10.8 1.0
S4 X:SF4701 2.3 10.9 1.0
SG X:CYS51 2.3 11.1 1.0
S3 X:SF4701 2.3 11.0 1.0
S1 X:SF4701 2.3 10.6 1.0
FE1 X:SF4701 2.7 10.7 1.0
FE3 X:SF4701 2.7 10.4 1.0
FE4 X:SF4701 2.8 10.8 1.0
H X:CYS51 3.1 12.3 1.0
HB3 X:CYS51 3.3 12.5 1.0
CB X:CYS51 3.3 10.4 1.0
N X:CYS51 3.5 10.2 1.0
HG3 X:MET199 3.7 13.7 0.5
HB2 X:GLN53 3.7 13.8 1.0
HG3 X:MET199 3.7 13.9 0.5
CA X:CYS51 3.9 10.8 1.0
S2 X:SF4701 3.9 10.9 1.0
HE21 X:GLN53 4.0 17.5 1.0
H X:GLY54 4.0 14.6 1.0
H X:GLN53 4.2 13.9 1.0
HB2 X:MET199 4.2 12.9 0.5
HB2 X:CYS51 4.2 12.5 1.0
HB2 X:MET199 4.2 12.7 0.5
O X:CYS51 4.2 11.2 1.0
C X:CYS51 4.3 10.4 1.0
HG2 X:MET199 4.3 13.7 0.5
C X:HIS50 4.3 10.7 1.0
HG2 X:MET199 4.3 13.9 0.5
CG X:MET199 4.4 11.4 0.5
CG X:MET199 4.4 11.6 0.5
N X:GLY54 4.5 12.2 1.0
H X:HIS50 4.5 12.7 1.0
HB3 X:CYS70 4.5 13.5 1.0
HB2 X:HIS50 4.5 12.3 1.0
CB X:GLN53 4.6 11.5 1.0
HA3 X:GLY54 4.7 14.4 1.0
HA X:CYS51 4.8 12.9 1.0
N X:HIS50 4.8 10.6 1.0
N X:GLN53 4.8 11.6 1.0
SG X:CYS48 4.8 10.3 1.0
CB X:MET199 4.8 10.6 0.5
SG X:CYS70 4.8 11.1 1.0
CB X:MET199 4.8 10.8 0.5
NE2 X:GLN53 4.8 14.6 1.0
SG X:CYS56 4.8 11.1 1.0
H X:CYS70 4.9 13.7 1.0
CA X:HIS50 5.0 10.4 1.0
HB X:ILE69 5.0 14.5 1.0
O X:HIS50 5.0 11.9 1.0

Iron binding site 3 out of 11 in 7zxl

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Iron binding site 3 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe701

b:10.4
occ:1.00
FE3 X:SF4701 0.0 10.4 1.0
S1 X:SF4701 2.2 10.6 1.0
S4 X:SF4701 2.3 10.9 1.0
SG X:CYS48 2.3 10.3 1.0
S2 X:SF4701 2.3 10.9 1.0
FE1 X:SF4701 2.7 10.7 1.0
FE2 X:SF4701 2.7 10.8 1.0
FE4 X:SF4701 2.7 10.8 1.0
HB3 X:CYS48 3.0 11.7 1.0
HH22 X:ARG80 3.2 13.6 1.0
H X:HIS50 3.2 12.7 1.0
CB X:CYS48 3.3 9.7 1.0
HB2 X:HIS50 3.4 12.3 1.0
HH21 X:ARG80 3.5 13.6 1.0
NH2 X:ARG80 3.6 11.4 1.0
S3 X:SF4701 3.8 11.0 1.0
HB2 X:CYS48 3.9 11.7 1.0
HB2 X:CYS56 3.9 13.5 1.0
H X:CYS51 3.9 12.3 1.0
N X:HIS50 4.0 10.6 1.0
C X:CYS48 4.2 10.4 1.0
O X:CYS48 4.2 10.6 1.0
CB X:HIS50 4.3 10.3 1.0
CA X:CYS48 4.3 10.3 1.0
N X:CYS51 4.5 10.2 1.0
CA X:HIS50 4.5 10.4 1.0
N X:ARG49 4.6 10.3 1.0
HG12 X:ILE77 4.6 13.9 1.0
SG X:CYS56 4.7 11.1 1.0
CB X:CYS56 4.7 11.3 1.0
C X:HIS50 4.7 10.7 1.0
CZ X:ARG80 4.8 11.3 1.0
HA X:CYS48 4.8 12.4 1.0
HA X:ARG49 4.8 12.5 1.0
SG X:CYS70 4.9 11.1 1.0
SG X:CYS51 4.9 11.1 1.0
HB3 X:ALA72 4.9 14.8 1.0
HB3 X:HIS50 4.9 12.3 1.0
C X:ARG49 4.9 10.5 1.0
H X:CYS56 4.9 13.3 1.0
H X:ARG49 4.9 12.3 1.0

Iron binding site 4 out of 11 in 7zxl

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Iron binding site 4 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe701

b:10.8
occ:1.00
FE4 X:SF4701 0.0 10.8 1.0
S2 X:SF4701 2.2 10.9 1.0
SG X:CYS70 2.3 11.1 1.0
S1 X:SF4701 2.3 10.6 1.0
S3 X:SF4701 2.3 11.0 1.0
FE3 X:SF4701 2.7 10.4 1.0
FE1 X:SF4701 2.7 10.7 1.0
FE2 X:SF4701 2.8 10.8 1.0
H X:CYS70 3.1 13.7 1.0
HB3 X:CYS70 3.1 13.5 1.0
HH22 X:ARG80 3.3 13.6 1.0
CB X:CYS70 3.4 11.3 1.0
N X:CYS70 3.9 11.4 1.0
HB2 X:ALA72 3.9 14.8 1.0
HB3 X:ALA72 3.9 14.8 1.0
S4 X:SF4701 3.9 10.9 1.0
HG2 X:MET199 4.0 13.7 0.5
HG2 X:MET199 4.0 13.9 0.5
HB2 X:CYS70 4.1 13.5 1.0
O X:HOH1176 4.2 11.7 1.0
NH2 X:ARG80 4.2 11.4 1.0
CA X:CYS70 4.3 11.5 1.0
H X:ALA72 4.3 13.9 1.0
HG3 X:MET199 4.3 13.9 0.5
H X:ILE69 4.3 13.6 1.0
HA3 X:GLY68 4.3 14.3 1.0
HG3 X:MET199 4.4 13.7 0.5
CB X:ALA72 4.4 12.3 1.0
HH21 X:ARG80 4.5 13.6 1.0
HH12 X:ARG80 4.6 14.4 1.0
CG X:MET199 4.6 11.6 0.5
CG X:MET199 4.6 11.4 0.5
HB X:ILE69 4.6 14.5 1.0
N X:ILE69 4.6 11.3 1.0
SG X:CYS51 4.7 11.1 1.0
SG X:CYS56 4.8 11.1 1.0
SG X:CYS48 4.8 10.3 1.0
HE21 X:GLN53 4.9 17.5 1.0
HA X:CYS70 5.0 13.8 1.0

Iron binding site 5 out of 11 in 7zxl

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Iron binding site 5 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe702

b:11.7
occ:1.00
FE1 X:FES702 0.0 11.7 1.0
SG X:CYS47 2.3 11.8 1.0
S1 X:FES702 2.3 11.9 1.0
S2 X:FES702 2.3 11.7 1.0
FE2 X:FES702 2.7 11.8 1.0
HB2 X:CYS47 3.1 13.2 1.0
CB X:CYS47 3.2 11.0 1.0
HB3 X:CYS47 3.5 13.2 1.0
O X:HOH1375 3.6 19.3 1.0
HB2 X:PHE41 4.2 14.9 1.0
HD2 X:ARG49 4.3 16.3 1.0
HB3 X:PRO55 4.3 15.9 0.5
HB2 X:PRO55 4.4 15.6 0.5
HB3 X:ARG57 4.5 19.2 0.4
CA X:CYS47 4.6 10.8 1.0
HD3 X:ARG57 4.7 22.9 0.4
H X:GLY42 4.7 16.0 1.0
HA X:CYS47 4.7 13.0 1.0
SG X:CYS39 4.7 13.1 1.0
HG3 X:ARG49 4.7 14.2 1.0
HB3 X:PRO55 4.8 15.6 0.5
HB3 X:PHE41 4.8 14.9 1.0
HB2 X:PRO55 4.8 15.9 0.5
HB3 X:ARG57 4.9 17.5 0.6
CB X:PHE41 4.9 12.4 1.0
N X:GLY42 5.0 13.3 1.0
HA2 X:GLY42 5.0 16.5 1.0
HA3 X:GLY42 5.0 16.5 1.0

Iron binding site 6 out of 11 in 7zxl

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Iron binding site 6 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe702

b:11.8
occ:1.00
FE2 X:FES702 0.0 11.8 1.0
S2 X:FES702 2.3 11.7 1.0
SG X:CYS39 2.3 13.1 1.0
S1 X:FES702 2.3 11.9 1.0
FE1 X:FES702 2.7 11.7 1.0
CB X:CYS39 3.2 13.4 1.0
HB3 X:CYS39 3.2 16.1 1.0
HB2 X:CYS39 3.3 16.1 1.0
HB2 X:PHE41 3.4 14.9 1.0
H X:GLY42 3.5 16.0 1.0
HD2 X:PHE41 4.1 18.3 1.0
N X:GLY42 4.2 13.3 1.0
O X:HOH1178 4.3 56.1 1.0
HA3 X:GLY42 4.4 16.5 1.0
CB X:PHE41 4.4 12.4 1.0
HB2 X:CYS47 4.5 13.2 1.0
CA X:CYS39 4.6 13.6 1.0
H X:PHE41 4.6 15.3 1.0
HH21 X:ARG57 4.7 24.9 0.4
CA X:GLY42 4.8 13.8 1.0
HB3 X:PHE41 4.8 14.9 1.0
SG X:CYS47 4.8 11.8 1.0
CD2 X:PHE41 4.9 15.3 1.0
HA X:CYS39 4.9 16.3 1.0
HD3 X:ARG57 5.0 22.9 0.4

Iron binding site 7 out of 11 in 7zxl

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Iron binding site 7 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe703

b:14.0
occ:0.55
FE1 X:WCC703 0.0 14.0 0.6
SG X:CYS333 2.1 16.6 0.8
S3 X:WCC703 2.3 16.1 0.6
S2 X:WCC703 2.3 17.1 0.7
S4 X:WCC703 2.3 16.2 0.5
FE3 X:WCC703 2.6 14.4 0.6
FE4 X:WCC703 2.7 16.4 0.7
HB3 X:CYS333 2.9 19.7 1.0
CB X:CYS333 2.9 16.4 1.0
HE1 X:HIS261 3.1 31.1 0.2
HB2 X:CYS333 3.2 19.7 1.0
FE X:FE2704 3.2 19.1 0.3
NI X:WCC703 3.3 16.1 0.3
FE X:FE2704 3.3 21.9 0.5
NE2 X:HIS261 3.6 25.7 0.8
S1 X:WCC703 3.6 16.5 0.6
SG X:CYS294 3.6 15.4 0.2
CE1 X:HIS261 3.6 26.0 1.0
O X:HOH872 4.0 22.2 0.7
HB2 X:HIS561 4.2 13.7 1.0
HE1 X:MET560 4.3 18.3 1.0
CA X:CYS333 4.3 14.6 1.0
HA X:CYS333 4.4 17.5 1.0
HE3 X:MET560 4.4 18.3 1.0
HE21 X:GLN332 4.5 20.9 0.4
SG X:CYS446 4.6 16.1 1.0
HB3 X:CYS294 4.7 17.5 0.7
O X:HOH1008 4.7 19.8 1.0
HG2 X:GLN332 4.7 21.0 0.4
HD2 X:HIS561 4.8 14.6 1.0
HB3 X:HIS561 4.8 13.7 1.0
HB3 X:CYS446 4.8 16.6 1.0
CE X:MET560 4.8 15.2 1.0
CB X:HIS561 4.8 11.4 1.0
SG X:CYS476 4.9 14.4 0.7
N X:CYS333 5.0 15.8 1.0
SG X:CYS294 5.0 14.0 0.7
ND1 X:HIS261 5.0 22.1 0.5
CD2 X:HIS261 5.0 25.4 1.0
SG X:CYS476 5.0 15.6 0.3
HB3 X:GLN332 5.0 23.5 0.6
CD2 X:HIS561 5.0 12.2 1.0

Iron binding site 8 out of 11 in 7zxl

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Iron binding site 8 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe703

b:14.4
occ:0.59
FE3 X:WCC703 0.0 14.4 0.6
S1 X:WCC703 2.2 16.5 0.6
S4 X:WCC703 2.2 16.2 0.5
S2 X:WCC703 2.4 17.1 0.7
SG X:CYS446 2.4 16.1 1.0
FE1 X:WCC703 2.6 14.0 0.6
FE4 X:WCC703 2.7 16.4 0.7
NI X:WCC703 2.8 16.1 0.3
HA X:CYS446 3.0 15.4 1.0
HB3 X:CYS446 3.1 16.6 1.0
CB X:CYS446 3.1 13.8 1.0
CA X:CYS446 3.4 12.8 1.0
N X:CYS446 3.5 12.6 1.0
FE X:FE2704 3.7 21.9 0.5
O X:HOH1419 3.7 16.5 0.4
HB2 X:HIS561 3.8 13.7 1.0
H X:CYS446 3.8 15.1 1.0
HA2 X:GLY445 3.9 15.1 1.0
HE3 X:MET560 3.9 18.3 1.0
S3 X:WCC703 4.0 16.1 0.6
C X:GLY445 4.0 13.6 1.0
HB2 X:CYS446 4.0 16.6 1.0
HB3 X:HIS561 4.1 13.7 1.0
SG X:CYS333 4.3 16.6 0.8
HB2 X:CYS476 4.3 16.6 0.7
H X:HIS561 4.3 13.1 1.0
SG X:CYS476 4.3 15.6 0.3
HB2 X:CYS476 4.4 18.4 0.3
CB X:HIS561 4.4 11.4 1.0
SG X:CYS526 4.5 14.6 0.9
HB2 X:ALA564 4.5 16.7 1.0
CA X:GLY445 4.5 12.6 1.0
O X:GLY445 4.5 15.9 1.0
FE X:FE2704 4.6 19.1 0.3
H X:CYS476 4.6 16.7 0.3
HG X:SER312 4.6 18.3 1.0
H X:CYS476 4.6 16.5 0.7
HE1 X:MET560 4.6 18.3 1.0
CE X:MET560 4.7 15.2 1.0
O X:HOH872 4.7 22.2 0.7
HB3 X:MET560 4.7 15.3 1.0
SG X:CYS476 4.8 14.4 0.7
C X:CYS446 4.9 11.8 1.0
HB3 X:CYS333 4.9 19.7 1.0
HA3 X:GLY445 4.9 15.1 1.0
CB X:CYS476 5.0 15.3 0.3

Iron binding site 9 out of 11 in 7zxl

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Iron binding site 9 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe703

b:16.4
occ:0.66
FE4 X:WCC703 0.0 16.4 0.7
S2 X:WCC703 2.2 17.1 0.7
S3 X:WCC703 2.3 16.1 0.6
S1 X:WCC703 2.3 16.5 0.6
SG X:CYS476 2.4 14.4 0.7
SG X:CYS476 2.4 15.6 0.3
FE1 X:WCC703 2.7 14.0 0.6
FE3 X:WCC703 2.7 14.4 0.6
FE X:FE2704 3.1 21.9 0.5
SG X:CYS294 3.1 15.4 0.2
HB2 X:CYS476 3.1 16.6 0.7
CB X:CYS476 3.4 13.8 0.7
H X:CYS476 3.5 16.7 0.3
H X:CYS476 3.5 16.5 0.7
HA X:CYS446 3.5 15.4 1.0
NI X:WCC703 3.6 16.1 0.3
HB2 X:CYS476 3.7 18.4 0.3
CB X:CYS476 3.7 15.3 0.3
O X:HOH1128 3.7 27.9 1.0
HB2 X:SER312 3.7 18.3 1.0
S4 X:WCC703 4.0 16.2 0.5
N X:CYS476 4.0 13.9 0.3
FE X:FE2704 4.0 19.1 0.3
N X:CYS476 4.0 13.7 0.7
HB3 X:CYS476 4.1 16.6 0.7
HG X:SER312 4.1 18.3 1.0
HA X:CYS294 4.2 16.9 0.7
SG X:CYS294 4.3 14.0 0.7
HA X:CYS294 4.3 17.9 0.3
HB3 X:CYS294 4.3 17.5 0.7
HB3 X:CYS333 4.3 19.7 1.0
CA X:CYS476 4.4 14.3 0.3
HB3 X:CYS446 4.4 16.6 1.0
CA X:CYS476 4.4 13.3 0.7
CA X:CYS446 4.4 12.8 1.0
HB3 X:CYS476 4.5 18.4 0.3
SG X:CYS295 4.5 11.8 0.3
CB X:SER312 4.5 15.2 1.0
HA X:CYS476 4.5 17.1 0.3
HA X:SER312 4.6 16.5 1.0
OG X:SER312 4.6 15.2 1.0
CB X:CYS294 4.6 15.5 0.3
SG X:CYS333 4.7 16.6 0.8
H X:CYS295 4.7 16.7 0.7
CB X:CYS294 4.7 14.6 0.7
H X:SER312 4.7 17.4 1.0
CB X:CYS446 4.7 13.8 1.0
SG X:CYS526 4.7 14.6 0.9
HA X:CYS476 4.8 16.0 0.7
CB X:CYS333 4.8 16.4 1.0
O X:GLY445 4.8 15.9 1.0
SG X:CYS446 4.9 16.1 1.0
HB2 X:CYS333 4.9 19.7 1.0
SG X:CYS295 4.9 18.7 0.7
HA3 X:GLY475 4.9 15.5 1.0
CA X:CYS294 4.9 14.9 0.3
H X:CYS295 4.9 16.2 0.3
CA X:CYS294 4.9 14.1 0.7
HB2 X:CYS294 4.9 18.6 0.3
C X:GLY475 4.9 13.1 1.0
N X:CYS446 5.0 12.6 1.0
HE1 X:HIS261 5.0 31.1 0.2
HA2 X:GLY475 5.0 15.5 1.0

Iron binding site 10 out of 11 in 7zxl

Go back to Iron Binding Sites List in 7zxl
Iron binding site 10 out of 11 in the H93A Mutant of Recombinant Codh-II


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of H93A Mutant of Recombinant Codh-II within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe704

b:19.1
occ:0.34
FE X:FE2704 0.0 19.1 0.3
NE2 X:HIS261 1.6 25.7 0.8
FE X:FE2704 1.7 21.9 0.5
O X:HOH872 2.1 22.2 0.7
SG X:CYS295 2.3 18.7 0.7
CD2 X:HIS261 2.4 25.4 1.0
S3 X:WCC703 2.4 16.1 0.6
HD2 X:HIS261 2.6 30.5 1.0
NI X:WCC703 2.7 16.1 0.3
HB2 X:CYS295 2.7 13.6 0.3
CE1 X:HIS261 2.7 26.0 1.0
HB2 X:CYS295 2.9 21.4 0.7
HE1 X:HIS261 3.1 31.1 0.2
SG X:CYS295 3.2 11.8 0.3
CB X:CYS295 3.2 17.8 0.7
FE1 X:WCC703 3.2 14.0 0.6
HB2 X:CYS526 3.2 16.2 1.0
CB X:CYS295 3.4 11.3 0.3
SG X:CYS526 3.4 14.6 0.9
S4 X:WCC703 3.4 16.2 0.5
CG X:HIS261 3.5 23.5 1.0
ND1 X:HIS261 3.7 22.1 0.5
HB3 X:CYS295 3.8 13.6 0.3
CB X:CYS526 3.8 13.5 1.0
H X:CYS295 3.8 16.7 0.7
HB3 X:CYS295 3.8 21.4 0.7
FE4 X:WCC703 4.0 16.4 0.7
H X:CYS526 4.1 14.4 1.0
H X:CYS295 4.1 16.2 0.3
S1 X:WCC703 4.1 16.5 0.6
SG X:CYS294 4.2 15.4 0.2
O X:HOH1278 4.2 14.6 1.0
SG X:CYS333 4.3 16.6 0.8
CA X:CYS295 4.3 15.5 0.7
HB3 X:CYS526 4.4 16.2 1.0
N X:CYS295 4.4 13.9 0.7
HD1 X:HIS261 4.5 26.5 1.0
O X:HOH1128 4.5 27.9 1.0
FE3 X:WCC703 4.6 14.4 0.6
HA X:CYS295 4.6 18.6 0.7
HG2 X:LYS563 4.6 19.2 0.6
CA X:CYS295 4.6 13.0 0.3
N X:CYS295 4.6 13.5 0.3
HB3 X:CYS294 4.6 17.5 0.7
HB2 X:CYS333 4.7 19.7 1.0
HE21 X:GLN332 4.7 20.9 0.4
N X:CYS526 4.8 12.0 1.0
CB X:HIS261 4.9 21.9 1.0
OE1 X:GLN332 4.9 18.6 0.6
HA X:HIS261 4.9 23.4 1.0
HB3 X:GLN332 5.0 23.5 0.6
CA X:CYS526 5.0 12.4 1.0

Reference:

Y.Basak, J.H.Jeoung, L.Domnik, J.Ruickoldt, H.Dobbek. Substrate Activation at the Ni,Fe Cluster of Co Dehydrogenases: the Influence of the Protein Matrix Acs Catalysis 2022.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.2C02922
Page generated: Thu Aug 7 12:19:23 2025

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