Atomistry » Iron » PDB 7zx5-8abf » 8ab8
Atomistry »
  Iron »
    PDB 7zx5-8abf »
      8ab8 »

Iron in PDB 8ab8: Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced

Enzymatic activity of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced

All present enzymatic activity of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced:
7.1.1.8;

Iron Binding Sites:

The binding sites of Iron atom in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced (pdb code 8ab8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced, PDB code: 8ab8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 1 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:26.0
occ:1.00
 FE C:HEM501 0.0 26.0 1.0
ND C:HEM501 1.9 27.7 1.0
NA C:HEM501 2.0 27.5 1.0
NE2 C:HIS183 2.0 26.9 1.0
NC C:HEM501 2.1 28.5 1.0
NB C:HEM501 2.1 28.1 1.0
NE2 C:HIS82 2.1 24.1 1.0
C1D C:HEM501 2.9 27.4 1.0
C4D C:HEM501 2.9 27.8 1.0
C1A C:HEM501 3.0 27.5 1.0
CE1 C:HIS183 3.0 25.2 1.0
C4A C:HEM501 3.0 28.6 1.0
CE1 C:HIS82 3.1 23.9 1.0
C4B C:HEM501 3.1 29.9 1.0
C4C C:HEM501 3.1 29.0 1.0
CD2 C:HIS183 3.1 26.9 1.0
C1B C:HEM501 3.1 29.4 1.0
C1C C:HEM501 3.1 29.9 1.0
CD2 C:HIS82 3.1 23.7 1.0
CHA C:HEM501 3.4 26.7 1.0
CHD C:HEM501 3.4 28.2 1.0
CHB C:HEM501 3.5 28.9 1.0
CHC C:HEM501 3.5 30.7 1.0
ND1 C:HIS183 4.1 25.5 1.0
C2A C:HEM501 4.2 29.6 1.0
ND1 C:HIS82 4.2 24.6 1.0
CG C:HIS183 4.2 26.8 1.0
C3A C:HEM501 4.2 28.7 1.0
C3D C:HEM501 4.2 29.1 1.0
C2D C:HEM501 4.2 28.6 1.0
CG C:HIS82 4.2 25.1 1.0
C3C C:HEM501 4.3 31.8 1.0
C2C C:HEM501 4.3 32.0 1.0
C3B C:HEM501 4.3 30.5 1.0
C2B C:HEM501 4.3 29.7 1.0
CA C:GLY131 4.7 31.8 1.0
NE2 C:GLN43 4.9 33.1 1.0

Iron binding site 2 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 2 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe502

b:26.9
occ:1.00
 FE C:HEM502 0.0 26.9 1.0
ND C:HEM502 1.9 26.7 1.0
NA C:HEM502 2.0 27.1 1.0
NC C:HEM502 2.1 26.4 1.0
NB C:HEM502 2.1 26.3 1.0
NE2 C:HIS197 2.2 29.4 1.0
NE2 C:HIS96 2.2 27.0 1.0
C4D C:HEM502 2.9 26.9 1.0
C1D C:HEM502 2.9 28.0 1.0
C4C C:HEM502 3.0 27.4 1.0
C1A C:HEM502 3.0 27.2 1.0
CE1 C:HIS197 3.0 27.9 1.0
C4A C:HEM502 3.1 27.0 1.0
C1B C:HEM502 3.1 25.8 1.0
C4B C:HEM502 3.1 26.6 1.0
C1C C:HEM502 3.1 27.5 1.0
CD2 C:HIS96 3.2 28.2 1.0
CE1 C:HIS96 3.2 27.8 1.0
CD2 C:HIS197 3.2 29.1 1.0
CHA C:HEM502 3.4 27.2 1.0
CHD C:HEM502 3.4 27.3 1.0
CHB C:HEM502 3.5 25.7 1.0
CHC C:HEM502 3.5 27.0 1.0
C3D C:HEM502 4.1 28.4 1.0
C3C C:HEM502 4.2 27.8 1.0
C2D C:HEM502 4.2 27.7 1.0
C2A C:HEM502 4.2 27.4 1.0
ND1 C:HIS197 4.2 29.3 1.0
C2C C:HEM502 4.2 27.1 1.0
C3A C:HEM502 4.3 26.9 1.0
ND1 C:HIS96 4.3 29.8 1.0
CG C:HIS96 4.3 28.1 1.0
C2B C:HEM502 4.3 26.7 1.0
CG C:HIS197 4.3 28.6 1.0
C3B C:HEM502 4.3 26.9 1.0

Iron binding site 3 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 3 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe301

b:83.6
occ:1.00
 FE1 P:FES301 0.0 83.6 1.0
S2 P:FES301 2.2 73.7 1.0
SG P:CYS187 2.2 92.1 1.0
S1 P:FES301 2.2 87.9 1.0
SG P:CYS168 2.3 94.0 1.0
CB P:CYS168 2.9 84.1 1.0
FE2 P:FES301 3.0 80.4 1.0
CB P:CYS187 3.1 105.5 1.0
OG P:SER192 3.7 136.1 1.0
CB P:HIS170 3.8 76.5 1.0
CA P:CYS168 4.3 77.4 1.0
N P:LEU171 4.5 77.2 1.0
ND1 P:HIS170 4.5 81.5 1.0
ND1 P:HIS190 4.5 109.3 1.0
CB P:CYS173 4.5 85.6 1.0
CA P:CYS187 4.6 114.0 1.0
CB P:CYS189 4.6 120.8 1.0
N P:HIS170 4.6 72.6 1.0
CG P:HIS170 4.7 79.4 1.0
C P:CYS168 4.7 78.3 1.0
CA P:HIS170 4.7 73.8 1.0
N P:CYS173 4.7 69.2 1.0
CB P:SER192 4.8 135.5 1.0
N P:GLY172 4.9 71.3 1.0
N P:HIS190 4.9 114.6 1.0
O P:CYS168 4.9 82.5 1.0
SG P:CYS173 5.0 99.0 1.0

Iron binding site 4 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 4 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe301

b:80.4
occ:1.00
 FE2 P:FES301 0.0 80.4 1.0
ND1 P:HIS190 2.1 109.3 1.0
ND1 P:HIS170 2.1 81.5 1.0
S2 P:FES301 2.2 73.7 1.0
S1 P:FES301 2.2 87.9 1.0
CG P:HIS190 2.8 109.0 1.0
FE1 P:FES301 3.0 83.6 1.0
CG P:HIS170 3.0 79.4 1.0
CB P:HIS190 3.0 111.2 1.0
CE1 P:HIS190 3.1 107.2 1.0
CE1 P:HIS170 3.1 83.4 1.0
CB P:HIS170 3.3 76.5 1.0
N P:HIS190 3.7 114.6 1.0
CD2 P:HIS190 3.9 103.9 1.0
CA P:HIS190 3.9 109.9 1.0
NE2 P:HIS190 4.0 107.4 1.0
CD2 P:HIS170 4.2 81.8 1.0
NE2 P:HIS170 4.2 82.1 1.0
N P:LEU171 4.2 77.2 1.0
CB P:CYS189 4.3 120.8 1.0
SG P:CYS187 4.4 92.1 1.0
CB P:LEU171 4.5 83.3 1.0
C P:CYS189 4.5 122.4 1.0
CG P:LEU171 4.6 89.9 1.0
CA P:HIS170 4.6 73.8 1.0
SG P:CYS168 4.7 94.0 1.0
C P:HIS190 4.7 109.6 1.0
CG P:PRO204 4.8 111.1 1.0
CD1 P:LEU171 4.8 96.2 1.0
C P:HIS170 4.8 73.0 1.0
CA P:CYS189 4.9 123.0 1.0
CA P:LEU171 5.0 78.0 1.0

Iron binding site 5 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 5 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:37.8
occ:1.00
 FE D:HEC401 0.0 37.8 1.0
NE2 D:HIS128 2.0 33.7 1.0
NB D:HEC401 2.1 37.0 1.0
ND D:HEC401 2.1 37.2 1.0
NA D:HEC401 2.1 37.9 1.0
NC D:HEC401 2.1 40.0 1.0
SD D:MET248 2.2 43.5 1.0
CE1 D:HIS128 2.9 34.3 1.0
CD2 D:HIS128 3.0 33.2 1.0
C4B D:HEC401 3.0 38.2 1.0
C4D D:HEC401 3.1 38.1 1.0
C1B D:HEC401 3.1 37.7 1.0
C1C D:HEC401 3.1 40.1 1.0
C4A D:HEC401 3.1 37.5 1.0
C4C D:HEC401 3.1 40.0 1.0
C1A D:HEC401 3.1 38.6 1.0
C1D D:HEC401 3.1 37.7 1.0
CE D:MET248 3.3 38.9 1.0
CHA D:HEC401 3.4 38.7 1.0
CHB D:HEC401 3.4 36.5 1.0
CHC D:HEC401 3.4 37.7 1.0
CG D:MET248 3.5 42.4 1.0
CHD D:HEC401 3.5 37.1 1.0
ND1 D:HIS128 4.1 33.9 1.0
CB D:MET248 4.1 43.5 1.0
CG D:HIS128 4.1 33.5 1.0
C3B D:HEC401 4.3 39.2 1.0
C3C D:HEC401 4.3 41.7 1.0
C3D D:HEC401 4.4 37.5 1.0
C2D D:HEC401 4.4 37.7 1.0
C3A D:HEC401 4.4 36.8 1.0
C2A D:HEC401 4.4 36.7 1.0
C2C D:HEC401 4.4 41.2 1.0
C2B D:HEC401 4.4 39.6 1.0

Iron binding site 6 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 6 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe501

b:26.8
occ:1.00
 FE N:HEM501 0.0 26.8 1.0
ND N:HEM501 1.9 27.1 1.0
NA N:HEM501 2.0 28.0 1.0
NE2 N:HIS183 2.0 26.3 1.0
NE2 N:HIS82 2.1 24.0 1.0
NC N:HEM501 2.1 28.4 1.0
NB N:HEM501 2.1 28.9 1.0
C4D N:HEM501 2.9 27.3 1.0
C1D N:HEM501 2.9 26.7 1.0
C1A N:HEM501 3.0 27.6 1.0
CE1 N:HIS183 3.0 24.1 1.0
CE1 N:HIS82 3.0 23.8 1.0
C4A N:HEM501 3.0 29.5 1.0
C4B N:HEM501 3.1 30.8 1.0
C4C N:HEM501 3.1 29.2 1.0
CD2 N:HIS183 3.1 26.0 1.0
C1C N:HEM501 3.1 29.4 1.0
C1B N:HEM501 3.1 30.4 1.0
CD2 N:HIS82 3.1 24.3 1.0
CHA N:HEM501 3.4 27.2 1.0
CHD N:HEM501 3.4 27.0 1.0
CHC N:HEM501 3.5 31.0 1.0
CHB N:HEM501 3.5 29.8 1.0
ND1 N:HIS183 4.1 24.1 1.0
ND1 N:HIS82 4.2 23.9 1.0
C3D N:HEM501 4.2 28.4 1.0
C2D N:HEM501 4.2 27.1 1.0
C2A N:HEM501 4.2 28.3 1.0
CG N:HIS183 4.2 26.1 1.0
C3A N:HEM501 4.2 28.3 1.0
CG N:HIS82 4.2 25.7 1.0
C2C N:HEM501 4.3 31.4 1.0
C3C N:HEM501 4.3 32.0 1.0
C3B N:HEM501 4.3 31.6 1.0
C2B N:HEM501 4.3 30.8 1.0
CA N:GLY131 4.8 32.2 1.0
NE2 N:GLN43 4.9 32.8 1.0

Iron binding site 7 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 7 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe502

b:27.2
occ:1.00
 FE N:HEM502 0.0 27.2 1.0
ND N:HEM502 1.9 27.4 1.0
NA N:HEM502 2.0 27.1 1.0
NC N:HEM502 2.0 27.4 1.0
NE2 N:HIS96 2.1 25.4 1.0
NB N:HEM502 2.1 27.6 1.0
NE2 N:HIS197 2.2 26.4 1.0
C4D N:HEM502 2.9 27.1 1.0
C1D N:HEM502 2.9 28.0 1.0
CE1 N:HIS96 2.9 24.1 1.0
C4C N:HEM502 3.0 28.6 1.0
C1A N:HEM502 3.0 26.2 1.0
C4A N:HEM502 3.0 28.2 1.0
C1B N:HEM502 3.0 28.0 1.0
C4B N:HEM502 3.0 29.0 1.0
CE1 N:HIS197 3.1 25.1 1.0
C1C N:HEM502 3.1 28.2 1.0
CD2 N:HIS96 3.1 25.8 1.0
CD2 N:HIS197 3.3 26.9 1.0
CHA N:HEM502 3.4 26.4 1.0
CHD N:HEM502 3.4 28.5 1.0
CHB N:HEM502 3.4 27.8 1.0
CHC N:HEM502 3.5 28.0 1.0
ND1 N:HIS96 4.1 26.1 1.0
C3D N:HEM502 4.1 28.0 1.0
C3C N:HEM502 4.2 28.9 1.0
C2D N:HEM502 4.2 28.1 1.0
C2A N:HEM502 4.2 28.7 1.0
CG N:HIS96 4.2 26.5 1.0
ND1 N:HIS197 4.2 25.3 1.0
C2C N:HEM502 4.2 28.7 1.0
C3A N:HEM502 4.2 28.3 1.0
C3B N:HEM502 4.3 29.4 1.0
C2B N:HEM502 4.3 29.1 1.0
CG N:HIS197 4.3 25.9 1.0

Iron binding site 8 out of 8 in 8ab8

Go back to Iron Binding Sites List in 8ab8
Iron binding site 8 out of 8 in the Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex III2, B-Position, with Decylubiquinone and Ascorbate-Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Fe401

b:37.4
occ:1.00
 FE O:HEC401 0.0 37.4 1.0
NE2 O:HIS128 2.0 37.2 1.0
NB O:HEC401 2.1 37.4 1.0
NA O:HEC401 2.1 37.5 1.0
NC O:HEC401 2.1 38.5 1.0
ND O:HEC401 2.1 39.2 1.0
SD O:MET248 2.2 38.8 1.0
CE1 O:HIS128 2.9 38.6 1.0
CD2 O:HIS128 3.0 37.2 1.0
C4D O:HEC401 3.1 39.4 1.0
C4B O:HEC401 3.1 37.6 1.0
C4C O:HEC401 3.1 38.5 1.0
C1B O:HEC401 3.1 38.0 1.0
C1A O:HEC401 3.1 37.4 1.0
C1C O:HEC401 3.1 39.5 1.0
C4A O:HEC401 3.1 37.5 1.0
C1D O:HEC401 3.1 39.0 1.0
CE O:MET248 3.3 35.7 1.0
CHA O:HEC401 3.4 38.6 1.0
CHB O:HEC401 3.4 37.4 1.0
CHC O:HEC401 3.4 36.7 1.0
CHD O:HEC401 3.5 38.5 1.0
CG O:MET248 3.5 39.5 1.0
ND1 O:HIS128 4.0 37.1 1.0
CB O:MET248 4.1 42.9 1.0
CG O:HIS128 4.1 36.8 1.0
C3B O:HEC401 4.3 39.8 1.0
C3C O:HEC401 4.3 40.7 1.0
C3D O:HEC401 4.4 40.4 1.0
C2A O:HEC401 4.4 36.0 1.0
C2C O:HEC401 4.4 39.2 1.0
C3A O:HEC401 4.4 37.2 1.0
C2D O:HEC401 4.4 39.5 1.0
C2B O:HEC401 4.4 38.6 1.0

Reference:

J.P.Wieferig, W.Kuhlbrandt. Analysis of the Conformational Heterogeneity of the Rieske Iron-Sulfur Protein in Complex III2 By Cryo-Em Iucrj 2023.
ISSN: ESSN 2052-2525
Page generated: Fri Aug 9 16:15:27 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy