Iron in PDB 8ab9: Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
Enzymatic activity of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
All present enzymatic activity of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position:
7.1.1.8;
Iron Binding Sites:
The binding sites of Iron atom in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
(pdb code 8ab9). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position, PDB code: 8ab9:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 1 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:34.4
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
34.4
|
1.0
|
|
ND
|
C:HEM501
|
1.9
|
37.0
|
1.0
|
|
NA
|
C:HEM501
|
1.9
|
36.3
|
1.0
|
|
NE2
|
C:HIS183
|
2.0
|
29.6
|
1.0
|
|
NC
|
C:HEM501
|
2.0
|
37.4
|
1.0
|
|
NE2
|
C:HIS82
|
2.0
|
37.4
|
1.0
|
|
NB
|
C:HEM501
|
2.1
|
37.3
|
1.0
|
|
C1D
|
C:HEM501
|
2.9
|
38.1
|
1.0
|
|
C4D
|
C:HEM501
|
2.9
|
36.9
|
1.0
|
|
C1A
|
C:HEM501
|
2.9
|
36.9
|
1.0
|
|
C4A
|
C:HEM501
|
3.0
|
36.4
|
1.0
|
|
CE1
|
C:HIS183
|
3.0
|
32.0
|
1.0
|
|
CE1
|
C:HIS82
|
3.0
|
41.6
|
1.0
|
|
C4B
|
C:HEM501
|
3.0
|
38.1
|
1.0
|
|
C4C
|
C:HEM501
|
3.0
|
38.1
|
1.0
|
|
C1C
|
C:HEM501
|
3.0
|
40.5
|
1.0
|
|
C1B
|
C:HEM501
|
3.1
|
39.7
|
1.0
|
|
CD2
|
C:HIS183
|
3.1
|
31.6
|
1.0
|
|
CD2
|
C:HIS82
|
3.1
|
36.9
|
1.0
|
|
CHA
|
C:HEM501
|
3.4
|
35.1
|
1.0
|
|
CHD
|
C:HEM501
|
3.4
|
36.6
|
1.0
|
|
CHC
|
C:HEM501
|
3.4
|
38.3
|
1.0
|
|
CHB
|
C:HEM501
|
3.4
|
37.1
|
1.0
|
|
C3A
|
C:HEM501
|
4.1
|
38.0
|
1.0
|
|
ND1
|
C:HIS183
|
4.1
|
32.3
|
1.0
|
|
ND1
|
C:HIS82
|
4.1
|
39.9
|
1.0
|
|
C2A
|
C:HEM501
|
4.1
|
40.8
|
1.0
|
|
C2D
|
C:HEM501
|
4.1
|
37.9
|
1.0
|
|
C3D
|
C:HEM501
|
4.2
|
37.8
|
1.0
|
|
CG
|
C:HIS82
|
4.2
|
36.7
|
1.0
|
|
CG
|
C:HIS183
|
4.2
|
33.1
|
1.0
|
|
C2C
|
C:HEM501
|
4.3
|
43.7
|
1.0
|
|
C3C
|
C:HEM501
|
4.3
|
42.5
|
1.0
|
|
C3B
|
C:HEM501
|
4.3
|
42.5
|
1.0
|
|
C2B
|
C:HEM501
|
4.3
|
42.1
|
1.0
|
|
CA
|
C:GLY131
|
4.8
|
42.1
|
1.0
|
|
NE2
|
C:GLN43
|
4.9
|
54.4
|
1.0
|
|
Iron binding site 2 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 2 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:30.2
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
30.2
|
1.0
|
|
ND
|
C:HEM502
|
1.9
|
34.2
|
1.0
|
|
NA
|
C:HEM502
|
2.0
|
38.1
|
1.0
|
|
NC
|
C:HEM502
|
2.0
|
34.8
|
1.0
|
|
NB
|
C:HEM502
|
2.1
|
32.8
|
1.0
|
|
NE2
|
C:HIS197
|
2.2
|
31.6
|
1.0
|
|
NE2
|
C:HIS96
|
2.2
|
37.9
|
1.0
|
|
C4D
|
C:HEM502
|
2.9
|
36.5
|
1.0
|
|
C1D
|
C:HEM502
|
2.9
|
37.0
|
1.0
|
|
C4C
|
C:HEM502
|
3.0
|
34.7
|
1.0
|
|
C1A
|
C:HEM502
|
3.0
|
41.1
|
1.0
|
|
C4A
|
C:HEM502
|
3.0
|
40.2
|
1.0
|
|
CE1
|
C:HIS197
|
3.0
|
33.8
|
1.0
|
|
C4B
|
C:HEM502
|
3.0
|
34.3
|
1.0
|
|
C1B
|
C:HEM502
|
3.0
|
34.5
|
1.0
|
|
C1C
|
C:HEM502
|
3.1
|
36.8
|
1.0
|
|
CD2
|
C:HIS96
|
3.1
|
35.4
|
1.0
|
|
CE1
|
C:HIS96
|
3.2
|
46.7
|
1.0
|
|
CD2
|
C:HIS197
|
3.3
|
32.5
|
1.0
|
|
CHA
|
C:HEM502
|
3.4
|
37.9
|
1.0
|
|
CHD
|
C:HEM502
|
3.4
|
35.8
|
1.0
|
|
CHB
|
C:HEM502
|
3.4
|
38.8
|
1.0
|
|
CHC
|
C:HEM502
|
3.5
|
35.5
|
1.0
|
|
C3C
|
C:HEM502
|
4.1
|
35.9
|
1.0
|
|
C3D
|
C:HEM502
|
4.1
|
40.2
|
1.0
|
|
C2D
|
C:HEM502
|
4.1
|
38.2
|
1.0
|
|
C2A
|
C:HEM502
|
4.2
|
44.7
|
1.0
|
|
C3A
|
C:HEM502
|
4.2
|
41.8
|
1.0
|
|
C2C
|
C:HEM502
|
4.2
|
36.3
|
1.0
|
|
ND1
|
C:HIS197
|
4.2
|
35.1
|
1.0
|
|
CG
|
C:HIS96
|
4.3
|
36.5
|
1.0
|
|
C3B
|
C:HEM502
|
4.3
|
35.4
|
1.0
|
|
ND1
|
C:HIS96
|
4.3
|
44.0
|
1.0
|
|
C2B
|
C:HEM502
|
4.3
|
34.7
|
1.0
|
|
CG
|
C:HIS197
|
4.3
|
33.8
|
1.0
|
|
Iron binding site 3 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 3 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:103.6
occ:1.00
|
FE1
|
P:FES301
|
0.0
|
103.6
|
1.0
|
|
SG
|
P:CYS168
|
2.1
|
138.4
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
93.6
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
104.4
|
1.0
|
|
SG
|
P:CYS187
|
2.3
|
126.6
|
1.0
|
|
CB
|
P:CYS168
|
2.8
|
137.2
|
1.0
|
|
FE2
|
P:FES301
|
3.0
|
107.2
|
1.0
|
|
CB
|
P:CYS187
|
3.1
|
134.9
|
1.0
|
|
OG
|
P:SER192
|
3.6
|
141.8
|
1.0
|
|
CB
|
P:HIS170
|
3.7
|
130.1
|
1.0
|
|
CA
|
P:CYS168
|
4.3
|
136.4
|
1.0
|
|
N
|
P:LEU171
|
4.3
|
107.6
|
1.0
|
|
ND1
|
P:HIS170
|
4.5
|
139.0
|
1.0
|
|
N
|
P:HIS170
|
4.5
|
115.3
|
1.0
|
|
CB
|
P:CYS173
|
4.5
|
120.0
|
1.0
|
|
ND1
|
P:HIS190
|
4.6
|
136.1
|
1.0
|
|
CA
|
P:CYS187
|
4.6
|
142.6
|
1.0
|
|
CG
|
P:HIS170
|
4.6
|
142.0
|
1.0
|
|
CA
|
P:HIS170
|
4.6
|
116.0
|
1.0
|
|
C
|
P:CYS168
|
4.6
|
135.2
|
1.0
|
|
CB
|
P:CYS189
|
4.7
|
145.9
|
1.0
|
|
CB
|
P:SER192
|
4.7
|
135.0
|
1.0
|
|
N
|
P:GLY172
|
4.7
|
120.8
|
1.0
|
|
N
|
P:CYS173
|
4.7
|
108.5
|
1.0
|
|
SG
|
P:CYS173
|
4.9
|
153.6
|
1.0
|
|
N
|
P:HIS190
|
4.9
|
138.0
|
1.0
|
|
O
|
P:CYS168
|
5.0
|
129.1
|
1.0
|
|
OH
|
P:TYR194
|
5.0
|
144.2
|
1.0
|
|
Iron binding site 4 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 4 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe301
b:107.2
occ:1.00
|
FE2
|
P:FES301
|
0.0
|
107.2
|
1.0
|
|
ND1
|
P:HIS170
|
2.0
|
139.0
|
1.0
|
|
ND1
|
P:HIS190
|
2.1
|
136.1
|
1.0
|
|
S2
|
P:FES301
|
2.2
|
93.6
|
1.0
|
|
S1
|
P:FES301
|
2.2
|
104.4
|
1.0
|
|
CG
|
P:HIS190
|
2.8
|
133.4
|
1.0
|
|
CG
|
P:HIS170
|
3.0
|
142.0
|
1.0
|
|
CB
|
P:HIS190
|
3.0
|
137.4
|
1.0
|
|
FE1
|
P:FES301
|
3.0
|
103.6
|
1.0
|
|
CE1
|
P:HIS170
|
3.0
|
139.7
|
1.0
|
|
CE1
|
P:HIS190
|
3.2
|
136.8
|
1.0
|
|
CB
|
P:HIS170
|
3.2
|
130.1
|
1.0
|
|
N
|
P:HIS190
|
3.7
|
138.0
|
1.0
|
|
CA
|
P:HIS190
|
3.9
|
135.2
|
1.0
|
|
CD2
|
P:HIS190
|
3.9
|
137.7
|
1.0
|
|
NE2
|
P:HIS190
|
4.1
|
139.8
|
1.0
|
|
CD2
|
P:HIS170
|
4.1
|
149.0
|
1.0
|
|
N
|
P:LEU171
|
4.1
|
107.6
|
1.0
|
|
NE2
|
P:HIS170
|
4.1
|
146.6
|
1.0
|
|
SG
|
P:CYS187
|
4.3
|
126.6
|
1.0
|
|
CB
|
P:LEU171
|
4.3
|
106.4
|
1.0
|
|
CB
|
P:CYS189
|
4.3
|
145.9
|
1.0
|
|
CG
|
P:LEU171
|
4.4
|
114.9
|
1.0
|
|
CA
|
P:HIS170
|
4.5
|
116.0
|
1.0
|
|
C
|
P:CYS189
|
4.6
|
152.1
|
1.0
|
|
SG
|
P:CYS168
|
4.6
|
138.4
|
1.0
|
|
C
|
P:HIS190
|
4.7
|
129.5
|
1.0
|
|
C
|
P:HIS170
|
4.7
|
110.2
|
1.0
|
|
CD1
|
P:LEU171
|
4.7
|
112.9
|
1.0
|
|
CG
|
P:PRO204
|
4.8
|
145.1
|
1.0
|
|
CA
|
P:LEU171
|
4.8
|
107.1
|
1.0
|
|
CB
|
P:PRO204
|
4.9
|
146.0
|
1.0
|
|
CD
|
P:PRO204
|
5.0
|
150.0
|
1.0
|
|
OG
|
P:SER192
|
5.0
|
141.8
|
1.0
|
|
Iron binding site 5 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 5 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:43.2
occ:1.00
|
FE
|
D:HEC401
|
0.0
|
43.2
|
1.0
|
|
NE2
|
D:HIS128
|
2.0
|
53.4
|
1.0
|
|
NB
|
D:HEC401
|
2.0
|
45.3
|
1.0
|
|
ND
|
D:HEC401
|
2.0
|
45.3
|
1.0
|
|
NA
|
D:HEC401
|
2.1
|
42.4
|
1.0
|
|
NC
|
D:HEC401
|
2.1
|
45.6
|
1.0
|
|
SD
|
D:MET248
|
2.2
|
46.3
|
1.0
|
|
CE1
|
D:HIS128
|
3.0
|
51.5
|
1.0
|
|
C4B
|
D:HEC401
|
3.0
|
47.9
|
1.0
|
|
C4D
|
D:HEC401
|
3.0
|
47.9
|
1.0
|
|
C4C
|
D:HEC401
|
3.0
|
45.9
|
1.0
|
|
C4A
|
D:HEC401
|
3.0
|
42.9
|
1.0
|
|
C1B
|
D:HEC401
|
3.0
|
46.4
|
1.0
|
|
C1D
|
D:HEC401
|
3.0
|
45.7
|
1.0
|
|
C1A
|
D:HEC401
|
3.0
|
43.3
|
1.0
|
|
CD2
|
D:HIS128
|
3.1
|
53.1
|
1.0
|
|
C1C
|
D:HEC401
|
3.1
|
48.5
|
1.0
|
|
CE
|
D:MET248
|
3.3
|
47.8
|
1.0
|
|
CHA
|
D:HEC401
|
3.4
|
44.6
|
1.0
|
|
CHB
|
D:HEC401
|
3.4
|
43.6
|
1.0
|
|
CHD
|
D:HEC401
|
3.4
|
45.0
|
1.0
|
|
CHC
|
D:HEC401
|
3.4
|
49.3
|
1.0
|
|
CG
|
D:MET248
|
3.4
|
53.6
|
1.0
|
|
CB
|
D:MET248
|
4.0
|
51.8
|
1.0
|
|
ND1
|
D:HIS128
|
4.1
|
51.6
|
1.0
|
|
CG
|
D:HIS128
|
4.2
|
49.9
|
1.0
|
|
C3B
|
D:HEC401
|
4.2
|
46.9
|
1.0
|
|
C3C
|
D:HEC401
|
4.3
|
48.7
|
1.0
|
|
C3A
|
D:HEC401
|
4.3
|
46.2
|
1.0
|
|
C3D
|
D:HEC401
|
4.3
|
51.7
|
1.0
|
|
C2B
|
D:HEC401
|
4.3
|
46.7
|
1.0
|
|
C2D
|
D:HEC401
|
4.3
|
50.6
|
1.0
|
|
C2A
|
D:HEC401
|
4.3
|
45.9
|
1.0
|
|
C2C
|
D:HEC401
|
4.4
|
50.4
|
1.0
|
|
Iron binding site 6 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 6 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe501
b:30.4
occ:1.00
|
FE
|
N:HEM501
|
0.0
|
30.4
|
1.0
|
|
ND
|
N:HEM501
|
1.9
|
35.0
|
1.0
|
|
NA
|
N:HEM501
|
2.0
|
33.6
|
1.0
|
|
NE2
|
N:HIS183
|
2.0
|
34.9
|
1.0
|
|
NC
|
N:HEM501
|
2.0
|
35.0
|
1.0
|
|
NE2
|
N:HIS82
|
2.0
|
34.7
|
1.0
|
|
NB
|
N:HEM501
|
2.1
|
34.7
|
1.0
|
|
C4D
|
N:HEM501
|
2.9
|
35.8
|
1.0
|
|
C1D
|
N:HEM501
|
2.9
|
35.0
|
1.0
|
|
C1A
|
N:HEM501
|
2.9
|
35.2
|
1.0
|
|
CE1
|
N:HIS183
|
3.0
|
37.7
|
1.0
|
|
C4B
|
N:HEM501
|
3.0
|
36.6
|
1.0
|
|
C4A
|
N:HEM501
|
3.0
|
34.6
|
1.0
|
|
CE1
|
N:HIS82
|
3.0
|
35.4
|
1.0
|
|
C1C
|
N:HEM501
|
3.0
|
38.0
|
1.0
|
|
C4C
|
N:HEM501
|
3.0
|
36.0
|
1.0
|
|
C1B
|
N:HEM501
|
3.0
|
38.2
|
1.0
|
|
CD2
|
N:HIS183
|
3.1
|
36.5
|
1.0
|
|
CD2
|
N:HIS82
|
3.1
|
35.6
|
1.0
|
|
CHA
|
N:HEM501
|
3.4
|
34.4
|
1.0
|
|
CHD
|
N:HEM501
|
3.4
|
34.2
|
1.0
|
|
CHC
|
N:HEM501
|
3.4
|
38.3
|
1.0
|
|
CHB
|
N:HEM501
|
3.4
|
36.5
|
1.0
|
|
ND1
|
N:HIS183
|
4.1
|
36.2
|
1.0
|
|
ND1
|
N:HIS82
|
4.1
|
36.1
|
1.0
|
|
C3D
|
N:HEM501
|
4.1
|
37.8
|
1.0
|
|
C2A
|
N:HEM501
|
4.2
|
39.1
|
1.0
|
|
C3A
|
N:HEM501
|
4.2
|
36.8
|
1.0
|
|
C2D
|
N:HEM501
|
4.2
|
35.6
|
1.0
|
|
CG
|
N:HIS183
|
4.2
|
35.8
|
1.0
|
|
CG
|
N:HIS82
|
4.2
|
33.7
|
1.0
|
|
C3B
|
N:HEM501
|
4.2
|
38.8
|
1.0
|
|
C2C
|
N:HEM501
|
4.2
|
38.7
|
1.0
|
|
C3C
|
N:HEM501
|
4.3
|
39.3
|
1.0
|
|
C2B
|
N:HEM501
|
4.3
|
38.6
|
1.0
|
|
CA
|
N:GLY131
|
4.8
|
45.5
|
1.0
|
|
NE2
|
N:GLN43
|
4.9
|
50.3
|
1.0
|
|
Iron binding site 7 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 7 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe502
b:33.4
occ:1.00
|
FE
|
N:HEM502
|
0.0
|
33.4
|
1.0
|
|
ND
|
N:HEM502
|
1.9
|
37.8
|
1.0
|
|
NA
|
N:HEM502
|
2.0
|
38.7
|
1.0
|
|
NC
|
N:HEM502
|
2.0
|
33.4
|
1.0
|
|
NE2
|
N:HIS96
|
2.0
|
38.7
|
1.0
|
|
NB
|
N:HEM502
|
2.1
|
35.4
|
1.0
|
|
NE2
|
N:HIS197
|
2.1
|
36.8
|
1.0
|
|
C1D
|
N:HEM502
|
2.9
|
38.3
|
1.0
|
|
C4D
|
N:HEM502
|
2.9
|
39.4
|
1.0
|
|
C4C
|
N:HEM502
|
2.9
|
35.0
|
1.0
|
|
CE1
|
N:HIS96
|
2.9
|
40.8
|
1.0
|
|
C1A
|
N:HEM502
|
3.0
|
42.0
|
1.0
|
|
C4B
|
N:HEM502
|
3.0
|
35.3
|
1.0
|
|
C4A
|
N:HEM502
|
3.0
|
40.0
|
1.0
|
|
CE1
|
N:HIS197
|
3.0
|
36.2
|
1.0
|
|
C1C
|
N:HEM502
|
3.0
|
33.6
|
1.0
|
|
C1B
|
N:HEM502
|
3.0
|
37.4
|
1.0
|
|
CD2
|
N:HIS96
|
3.1
|
38.8
|
1.0
|
|
CD2
|
N:HIS197
|
3.2
|
37.5
|
1.0
|
|
CHD
|
N:HEM502
|
3.4
|
36.6
|
1.0
|
|
CHA
|
N:HEM502
|
3.4
|
39.4
|
1.0
|
|
CHB
|
N:HEM502
|
3.4
|
38.4
|
1.0
|
|
CHC
|
N:HEM502
|
3.5
|
34.0
|
1.0
|
|
ND1
|
N:HIS96
|
4.1
|
39.7
|
1.0
|
|
C3C
|
N:HEM502
|
4.1
|
36.2
|
1.0
|
|
C2D
|
N:HEM502
|
4.1
|
39.0
|
1.0
|
|
C2A
|
N:HEM502
|
4.2
|
46.5
|
1.0
|
|
C3D
|
N:HEM502
|
4.2
|
41.1
|
1.0
|
|
C2C
|
N:HEM502
|
4.2
|
34.2
|
1.0
|
|
C3A
|
N:HEM502
|
4.2
|
43.0
|
1.0
|
|
ND1
|
N:HIS197
|
4.2
|
37.7
|
1.0
|
|
CG
|
N:HIS96
|
4.2
|
37.7
|
1.0
|
|
C3B
|
N:HEM502
|
4.3
|
37.2
|
1.0
|
|
C2B
|
N:HEM502
|
4.3
|
36.6
|
1.0
|
|
CG
|
N:HIS197
|
4.3
|
37.0
|
1.0
|
|
Iron binding site 8 out
of 8 in 8ab9
Go back to
Iron Binding Sites List in 8ab9
Iron binding site 8 out
of 8 in the Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Complex III2 From Yarrowia Lipolytica, Ascorbate-Reduced, B-Position within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe401
b:43.8
occ:1.00
|
FE
|
O:HEC401
|
0.0
|
43.8
|
1.0
|
|
NE2
|
O:HIS128
|
2.0
|
51.7
|
1.0
|
|
NA
|
O:HEC401
|
2.0
|
41.4
|
1.0
|
|
ND
|
O:HEC401
|
2.0
|
46.0
|
1.0
|
|
NC
|
O:HEC401
|
2.1
|
45.2
|
1.0
|
|
NB
|
O:HEC401
|
2.1
|
44.9
|
1.0
|
|
SD
|
O:MET248
|
2.2
|
50.3
|
1.0
|
|
CE1
|
O:HIS128
|
2.9
|
49.4
|
1.0
|
|
C4A
|
O:HEC401
|
3.0
|
42.0
|
1.0
|
|
C4C
|
O:HEC401
|
3.0
|
45.7
|
1.0
|
|
CD2
|
O:HIS128
|
3.0
|
52.2
|
1.0
|
|
C4B
|
O:HEC401
|
3.0
|
47.3
|
1.0
|
|
C1D
|
O:HEC401
|
3.0
|
46.8
|
1.0
|
|
C1A
|
O:HEC401
|
3.0
|
42.0
|
1.0
|
|
C4D
|
O:HEC401
|
3.0
|
49.0
|
1.0
|
|
C1B
|
O:HEC401
|
3.1
|
44.4
|
1.0
|
|
C1C
|
O:HEC401
|
3.1
|
47.7
|
1.0
|
|
CE
|
O:MET248
|
3.3
|
52.4
|
1.0
|
|
CHD
|
O:HEC401
|
3.4
|
47.4
|
1.0
|
|
CHA
|
O:HEC401
|
3.4
|
44.6
|
1.0
|
|
CHB
|
O:HEC401
|
3.4
|
41.7
|
1.0
|
|
CHC
|
O:HEC401
|
3.4
|
48.6
|
1.0
|
|
CG
|
O:MET248
|
3.5
|
48.8
|
1.0
|
|
CB
|
O:MET248
|
4.0
|
51.4
|
1.0
|
|
ND1
|
O:HIS128
|
4.0
|
50.8
|
1.0
|
|
CG
|
O:HIS128
|
4.1
|
49.0
|
1.0
|
|
C3C
|
O:HEC401
|
4.3
|
47.3
|
1.0
|
|
C3B
|
O:HEC401
|
4.3
|
44.9
|
1.0
|
|
C3A
|
O:HEC401
|
4.3
|
45.5
|
1.0
|
|
C2D
|
O:HEC401
|
4.3
|
49.8
|
1.0
|
|
C2A
|
O:HEC401
|
4.3
|
45.1
|
1.0
|
|
C3D
|
O:HEC401
|
4.4
|
51.1
|
1.0
|
|
C2B
|
O:HEC401
|
4.4
|
44.8
|
1.0
|
|
C2C
|
O:HEC401
|
4.4
|
50.0
|
1.0
|
|
Reference:
J.P.Wieferig,
W.Kuhlbrandt.
Analysis of the Conformational Heterogeneity of the Rieske Iron-Sulfur Protein in Complex III2 By Cryo-Em Iucrj 2023.
ISSN: ESSN 2052-2525
Page generated: Thu Aug 7 12:41:46 2025
|
