Atomistry » Iron » PDB 8abg-8aq0 » 8ajz
Atomistry »
  Iron »
    PDB 8abg-8aq0 »
      8ajz »

Iron in PDB 8ajz: Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser

Enzymatic activity of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser

All present enzymatic activity of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser:
1.9.3.1;

Protein crystallography data

The structure of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser, PDB code: 8ajz was solved by C.Safari, S.Ghosh, R.Andersson, J.Johannesson, A.V.Donoso, P.Bath, R.Bosman, P.Dahl, E.Nango, R.Tanaka, D.Zoric, E.Svensson, T.Nakane, S.Iwata, R.Neutze, G.Branden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.70 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.85, 100.32, 96.62, 90, 126.76, 90
R / Rfree (%) 19 / 21

Other elements in 8ajz:

The structure of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser (pdb code 8ajz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser, PDB code: 8ajz:
Jump to Iron binding site number: 1; 2; 3;

Iron binding site 1 out of 3 in 8ajz

Go back to Iron Binding Sites List in 8ajz
Iron binding site 1 out of 3 in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:31.9
occ:1.00
FE A:HEM602 0.0 31.9 1.0
ND A:HEM602 1.9 27.5 1.0
NE2 A:HIS386 1.9 28.3 1.0
NE2 A:HIS72 2.0 30.0 1.0
NA A:HEM602 2.0 28.4 1.0
NC A:HEM602 2.1 29.1 1.0
NB A:HEM602 2.1 28.9 1.0
CE1 A:HIS386 2.9 29.6 1.0
C1D A:HEM602 3.0 27.8 1.0
C4D A:HEM602 3.0 27.9 1.0
C1A A:HEM602 3.0 29.2 1.0
CE1 A:HIS72 3.0 31.4 1.0
CD2 A:HIS72 3.0 28.9 1.0
C4C A:HEM602 3.0 31.4 1.0
C4B A:HEM602 3.0 27.2 1.0
C4A A:HEM602 3.1 27.3 1.0
CD2 A:HIS386 3.1 25.9 1.0
C1C A:HEM602 3.1 31.6 1.0
C1B A:HEM602 3.1 31.6 1.0
CHD A:HEM602 3.4 28.3 1.0
CHA A:HEM602 3.4 28.3 1.0
CHC A:HEM602 3.4 28.5 1.0
CHB A:HEM602 3.5 28.7 1.0
ND1 A:HIS386 4.0 27.3 1.0
CG A:HIS386 4.1 28.3 1.0
ND1 A:HIS72 4.1 30.2 1.0
CG A:HIS72 4.2 27.7 1.0
C2A A:HEM602 4.2 28.4 1.0
C3A A:HEM602 4.2 28.3 1.0
C2D A:HEM602 4.2 29.9 1.0
C3D A:HEM602 4.2 27.9 1.0
C3C A:HEM602 4.3 32.0 1.0
C2C A:HEM602 4.3 30.4 1.0
C3B A:HEM602 4.3 29.6 1.0
C2B A:HEM602 4.3 30.6 1.0
OE1 A:GLN42 4.6 34.3 1.0

Iron binding site 2 out of 3 in 8ajz

Go back to Iron Binding Sites List in 8ajz
Iron binding site 2 out of 3 in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:35.2
occ:0.70
FE A:HAS603 0.0 35.2 0.7
FE A:HAS603 0.3 49.9 0.3
C A:CMO614 1.9 26.4 0.7
NC A:HAS603 2.1 45.8 0.3
NA A:HAS603 2.1 31.2 0.7
ND A:HAS603 2.1 32.2 0.7
NB A:HAS603 2.1 32.8 0.7
NC A:HAS603 2.1 32.1 0.7
NB A:HAS603 2.1 44.3 0.3
ND A:HAS603 2.2 48.0 0.3
NE2 A:HIS384 2.2 31.1 0.7
NA A:HAS603 2.2 45.3 0.3
NE2 A:HIS384 2.5 42.3 0.3
C A:CMO614 2.7 43.5 0.3
O A:CMO614 3.0 28.4 0.7
C4C A:HAS603 3.0 47.4 0.3
C1C A:HAS603 3.1 49.5 0.3
C1D A:HAS603 3.1 31.3 0.7
C1D A:HAS603 3.1 53.9 0.3
C1B A:HAS603 3.1 31.9 0.7
C1A A:HAS603 3.1 30.8 0.7
C4A A:HAS603 3.1 30.5 0.7
C1B A:HAS603 3.1 51.5 0.3
C4D A:HAS603 3.1 31.2 0.7
C4B A:HAS603 3.1 45.8 0.3
C4B A:HAS603 3.1 32.1 0.7
C1C A:HAS603 3.1 31.8 0.7
C4C A:HAS603 3.1 30.3 0.7
C4A A:HAS603 3.1 48.4 0.3
CE1 A:HIS384 3.2 32.5 0.7
C1A A:HAS603 3.2 44.8 0.3
C4D A:HAS603 3.3 44.9 0.3
CD2 A:HIS384 3.3 31.6 0.7
O A:CMO614 3.3 35.6 0.3
CHB A:HAS603 3.4 47.9 0.3
CHB A:HAS603 3.4 31.1 0.7
CHA A:HAS603 3.4 30.1 0.7
CHC A:HAS603 3.4 45.1 0.3
CHD A:HAS603 3.4 49.1 0.3
CHC A:HAS603 3.4 31.8 0.7
CD2 A:HIS384 3.4 42.0 0.3
CHD A:HAS603 3.5 29.9 0.7
CE1 A:HIS384 3.5 39.7 0.3
CHA A:HAS603 3.6 43.1 0.3
ND1 A:HIS384 4.3 31.2 0.7
C3C A:HAS603 4.3 48.4 0.3
C2D A:HAS603 4.4 30.3 0.7
C2C A:HAS603 4.4 50.6 0.3
CG A:HIS384 4.4 30.8 0.7
C2A A:HAS603 4.4 29.0 0.7
C2D A:HAS603 4.4 51.1 0.3
C3C A:HAS603 4.4 30.1 0.7
C2B A:HAS603 4.4 31.2 0.7
C3A A:HAS603 4.4 29.4 0.7
C3D A:HAS603 4.4 29.9 0.7
C3B A:HAS603 4.4 31.5 0.7
C2C A:HAS603 4.4 31.4 0.7
C3B A:HAS603 4.5 49.2 0.3
C2B A:HAS603 4.5 49.6 0.3
C3A A:HAS603 4.5 46.3 0.3
C2A A:HAS603 4.6 44.7 0.3
C3D A:HAS603 4.6 45.4 0.3
ND1 A:HIS384 4.6 36.2 0.3
CG A:HIS384 4.6 42.0 0.3
CU A:CU601 4.6 46.4 0.3
CE1 A:HIS233 4.9 37.6 0.3
CU A:CU601 4.9 30.6 0.7

Iron binding site 3 out of 3 in 8ajz

Go back to Iron Binding Sites List in 8ajz
Iron binding site 3 out of 3 in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:49.9
occ:0.30
FE A:HAS603 0.0 49.9 0.3
FE A:HAS603 0.3 35.2 0.7
NE2 A:HIS384 1.9 31.1 0.7
ND A:HAS603 2.1 32.2 0.7
NB A:HAS603 2.1 44.3 0.3
NA A:HAS603 2.1 31.2 0.7
NC A:HAS603 2.1 45.8 0.3
NB A:HAS603 2.1 32.8 0.7
ND A:HAS603 2.2 48.0 0.3
NE2 A:HIS384 2.2 42.3 0.3
NC A:HAS603 2.2 32.1 0.7
NA A:HAS603 2.2 45.3 0.3
C A:CMO614 2.2 26.4 0.7
CE1 A:HIS384 2.9 32.5 0.7
CD2 A:HIS384 3.0 31.6 0.7
C A:CMO614 3.0 43.5 0.3
C1D A:HAS603 3.1 31.3 0.7
C1D A:HAS603 3.1 53.9 0.3
C4D A:HAS603 3.1 31.2 0.7
C1A A:HAS603 3.1 30.8 0.7
C4C A:HAS603 3.1 47.4 0.3
C1B A:HAS603 3.1 31.9 0.7
C1B A:HAS603 3.1 51.5 0.3
C1C A:HAS603 3.1 49.5 0.3
C4B A:HAS603 3.1 45.8 0.3
C4B A:HAS603 3.1 32.1 0.7
C4A A:HAS603 3.2 30.5 0.7
CD2 A:HIS384 3.2 42.0 0.3
C1C A:HAS603 3.2 31.8 0.7
C4C A:HAS603 3.2 30.3 0.7
C4A A:HAS603 3.2 48.4 0.3
CE1 A:HIS384 3.2 39.7 0.3
O A:CMO614 3.2 28.4 0.7
C1A A:HAS603 3.3 44.8 0.3
C4D A:HAS603 3.3 44.9 0.3
CHA A:HAS603 3.4 30.1 0.7
CHB A:HAS603 3.4 47.9 0.3
CHB A:HAS603 3.5 31.1 0.7
CHC A:HAS603 3.5 45.1 0.3
CHC A:HAS603 3.5 31.8 0.7
CHD A:HAS603 3.5 49.1 0.3
CHD A:HAS603 3.5 29.9 0.7
O A:CMO614 3.6 35.6 0.3
CHA A:HAS603 3.6 43.1 0.3
ND1 A:HIS384 4.0 31.2 0.7
CG A:HIS384 4.1 30.8 0.7
ND1 A:HIS384 4.3 36.2 0.3
CG A:HIS384 4.3 42.0 0.3
C2D A:HAS603 4.4 30.3 0.7
C3C A:HAS603 4.4 48.4 0.3
C2A A:HAS603 4.4 29.0 0.7
C2D A:HAS603 4.4 51.1 0.3
C3D A:HAS603 4.4 29.9 0.7
C2B A:HAS603 4.4 31.2 0.7
C3B A:HAS603 4.5 31.5 0.7
C3A A:HAS603 4.5 29.4 0.7
C2C A:HAS603 4.5 50.6 0.3
C3C A:HAS603 4.5 30.1 0.7
C2B A:HAS603 4.5 49.6 0.3
C3B A:HAS603 4.5 49.2 0.3
C2C A:HAS603 4.5 31.4 0.7
C3A A:HAS603 4.6 46.3 0.3
C2A A:HAS603 4.6 44.7 0.3
C3D A:HAS603 4.6 45.4 0.3
ND2 A:ASN366 4.8 33.1 1.0
CA A:GLY363 4.9 28.7 1.0
CU A:CU601 4.9 46.4 0.3

Reference:

C.Safari, S.Ghosh, R.Andersson, J.Johannesson, A.V.Donoso, P.Bath, R.Bosman, P.Dahl, E.Nango, R.Tanaka, D.Zoric, E.Svensson, T.Nakane, S.Iwata, R.Neutze, G.Branden. Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase at 2 Milliseconds After Irradiation By A 532 Nm Laser To Be Published.
Page generated: Fri Aug 9 17:35:48 2024

Last articles

Cl in 4N91
Cl in 4N8E
Cl in 4N4P
Cl in 4N78
Cl in 4N7S
Cl in 4N6X
Cl in 4N7I
Cl in 4N6P
Cl in 4N6D
Cl in 4N5H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy