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Iron in PDB 8c8q: Cytochrome C Oxidase From Schizosaccharomyces Pombe

Enzymatic activity of Cytochrome C Oxidase From Schizosaccharomyces Pombe

All present enzymatic activity of Cytochrome C Oxidase From Schizosaccharomyces Pombe:
7.1.1.9;

Other elements in 8c8q:

The structure of Cytochrome C Oxidase From Schizosaccharomyces Pombe also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 1 atom
Copper (Cu) 3 atoms
Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome C Oxidase From Schizosaccharomyces Pombe (pdb code 8c8q). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cytochrome C Oxidase From Schizosaccharomyces Pombe, PDB code: 8c8q:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8c8q

Go back to Iron Binding Sites List in 8c8q
Iron binding site 1 out of 2 in the Cytochrome C Oxidase From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C Oxidase From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:65.6
occ:1.00
FE A:HEA601 0.0 65.6 1.0
NA A:HEA601 2.0 60.9 1.0
NE2 A:HIS385 2.0 47.6 1.0
NC A:HEA601 2.1 59.8 1.0
ND A:HEA601 2.1 59.1 1.0
NB A:HEA601 2.1 59.1 1.0
CE1 A:HIS385 2.6 44.9 1.0
NE2 A:HIS68 2.7 30.1 1.0
C4A A:HEA601 3.0 60.8 1.0
C1A A:HEA601 3.1 57.2 1.0
C4C A:HEA601 3.1 57.0 1.0
C1D A:HEA601 3.1 59.2 1.0
C1B A:HEA601 3.1 56.4 1.0
C1C A:HEA601 3.1 60.3 1.0
C4B A:HEA601 3.1 56.9 1.0
C4D A:HEA601 3.1 55.5 1.0
CD2 A:HIS385 3.3 36.1 1.0
CHB A:HEA601 3.5 64.6 1.0
CHD A:HEA601 3.5 58.0 1.0
CHC A:HEA601 3.5 61.0 1.0
CHA A:HEA601 3.5 58.8 1.0
CE1 A:HIS68 3.6 33.0 1.0
CD2 A:HIS68 3.6 19.2 1.0
ND1 A:HIS385 3.8 42.5 1.0
CG A:HIS385 4.2 28.9 1.0
C3A A:HEA601 4.3 55.4 1.0
C2A A:HEA601 4.3 53.4 1.0
C3C A:HEA601 4.4 55.9 1.0
C2D A:HEA601 4.5 58.5 1.0
C2B A:HEA601 4.5 54.0 1.0
C3D A:HEA601 4.5 54.9 1.0
C2C A:HEA601 4.5 60.1 1.0
C3B A:HEA601 4.5 51.3 1.0
ND1 A:HIS68 4.7 16.7 1.0
CG A:HIS68 4.8 11.9 1.0

Iron binding site 2 out of 2 in 8c8q

Go back to Iron Binding Sites List in 8c8q
Iron binding site 2 out of 2 in the Cytochrome C Oxidase From Schizosaccharomyces Pombe


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cytochrome C Oxidase From Schizosaccharomyces Pombe within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:54.4
occ:1.00
FE A:HEA602 0.0 54.4 1.0
NA A:HEA602 2.0 43.5 1.0
NC A:HEA602 2.1 39.7 1.0
ND A:HEA602 2.1 41.3 1.0
NB A:HEA602 2.1 44.9 1.0
NE2 A:HIS383 2.5 31.7 1.0
C4A A:HEA602 3.0 42.3 1.0
C1A A:HEA602 3.1 37.0 1.0
C4C A:HEA602 3.1 39.3 1.0
C1D A:HEA602 3.1 42.5 1.0
C1C A:HEA602 3.1 37.2 1.0
C4B A:HEA602 3.1 36.6 1.0
C1B A:HEA602 3.1 40.3 1.0
C4D A:HEA602 3.1 34.0 1.0
CE1 A:HIS383 3.3 31.9 1.0
CHD A:HEA602 3.5 40.9 1.0
CHB A:HEA602 3.5 40.1 1.0
CHC A:HEA602 3.5 31.9 1.0
CHA A:HEA602 3.5 31.4 1.0
CD2 A:HIS383 3.7 30.4 1.0
C3A A:HEA602 4.3 38.3 1.0
C2A A:HEA602 4.3 38.2 1.0
C3C A:HEA602 4.4 36.3 1.0
CU A:CU603 4.5 86.4 1.0
C2D A:HEA602 4.5 38.7 1.0
C2B A:HEA602 4.5 32.7 1.0
C3B A:HEA602 4.5 40.4 1.0
C3D A:HEA602 4.5 36.6 1.0
C2C A:HEA602 4.5 41.9 1.0
ND1 A:HIS383 4.5 33.3 1.0
CG A:HIS383 4.7 21.1 1.0

Reference:

A.Moe, P.Adelroth, P.Brzezinski, L.Nasvik Ojemyr. Cryo-Em Structure and Function of S. Pombe Complex IV with Bound Respiratory Supercomplex Factor. Commun Chem V. 6 32 2023.
ISSN: ESSN 2399-3669
PubMed: 36797353
DOI: 10.1038/S42004-023-00827-3
Page generated: Fri Aug 9 20:32:27 2024

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