Iron in PDB 8dh6: Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs

All present enzymatic activity of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs:
7.1.1.9;

The structure of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Copper	(Cu)	2 atoms
Calcium	(Ca)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Iron atom in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs (pdb code 8dh6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs, PDB code: 8dh6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe604 b:54.3 occ:1.00 FE a:HEA604 0.0 54.3 1.0 NE2 a:HIS62 1.8 50.1 1.0 NA a:HEA604 2.0 54.3 1.0 NC a:HEA604 2.1 54.3 1.0 NB a:HEA604 2.1 54.3 1.0 ND a:HEA604 2.1 54.3 1.0 NE2 a:HIS378 2.2 51.2 1.0 CD2 a:HIS62 2.8 50.1 1.0 CE1 a:HIS62 2.8 50.1 1.0 C4A a:HEA604 3.0 54.3 1.0 C1A a:HEA604 3.0 54.3 1.0 C4C a:HEA604 3.1 54.3 1.0 C1B a:HEA604 3.1 54.3 1.0 C1C a:HEA604 3.1 54.3 1.0 C1D a:HEA604 3.1 54.3 1.0 C4B a:HEA604 3.1 54.3 1.0 C4D a:HEA604 3.1 54.3 1.0 CE1 a:HIS378 3.2 51.2 1.0 CD2 a:HIS378 3.2 51.2 1.0 CHB a:HEA604 3.4 54.3 1.0 CHD a:HEA604 3.4 54.3 1.0 CHA a:HEA604 3.5 54.3 1.0 CHC a:HEA604 3.5 54.3 1.0 ND1 a:HIS62 3.9 50.1 1.0 CG a:HIS62 3.9 50.1 1.0 C3A a:HEA604 4.1 54.3 1.0 C2A a:HEA604 4.1 54.3 1.0 ND1 a:HIS378 4.3 51.2 1.0 CG a:HIS378 4.3 51.2 1.0 C3C a:HEA604 4.4 54.3 1.0 C2B a:HEA604 4.4 54.3 1.0 C2C a:HEA604 4.4 54.3 1.0 C2D a:HEA604 4.4 54.3 1.0 C3B a:HEA604 4.4 54.3 1.0 C3D a:HEA604 4.5 54.3 1.0

Iron binding site 2 out of 2 in the Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe605 b:54.3 occ:1.00 FE a:HEA605 0.0 54.3 1.0 NA a:HEA605 2.0 54.3 1.0 NC a:HEA605 2.1 54.3 1.0 ND a:HEA605 2.1 54.3 1.0 NB a:HEA605 2.1 54.3 1.0 NE2 a:HIS376 2.5 50.5 1.0 C1A a:HEA605 3.0 54.3 1.0 C4A a:HEA605 3.0 54.3 1.0 C1C a:HEA605 3.1 54.3 1.0 C4B a:HEA605 3.1 54.3 1.0 C4D a:HEA605 3.1 54.3 1.0 C1D a:HEA605 3.1 54.3 1.0 C4C a:HEA605 3.1 54.3 1.0 C1B a:HEA605 3.1 54.3 1.0 CD2 a:HIS376 3.3 50.5 1.0 CHA a:HEA605 3.4 54.3 1.0 CHC a:HEA605 3.5 54.3 1.0 CHB a:HEA605 3.5 54.3 1.0 CHD a:HEA605 3.5 54.3 1.0 CE1 a:HIS376 3.5 50.5 1.0 C3A a:HEA605 4.2 54.3 1.0 C2A a:HEA605 4.2 54.3 1.0 C3C a:HEA605 4.4 54.3 1.0 C2C a:HEA605 4.4 54.3 1.0 C2B a:HEA605 4.4 54.3 1.0 C2D a:HEA605 4.4 54.3 1.0 C3B a:HEA605 4.4 54.3 1.0 C3D a:HEA605 4.4 54.3 1.0 CU a:CU603 4.5 66.3 1.0 CG a:HIS376 4.5 50.5 1.0 CE1 a:HIS241 4.6 56.8 1.0 ND1 a:HIS376 4.6 50.5 1.0 CG2 a:VAL380 4.9 52.1 1.0

A.S.Godoy, Y.Song, H.Cheruvara, A.Quigley, G.Oliva. Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs To Be Published.