Iron in PDB 8eby: Xpc Release From CORE7-Xpa-Dna (Ap)

All present enzymatic activity of Xpc Release From CORE7-Xpa-Dna (Ap):
3.6.4.12;

The structure of Xpc Release From CORE7-Xpa-Dna (Ap) also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Iron atom in the Xpc Release From CORE7-Xpa-Dna (Ap) (pdb code 8eby). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Xpc Release From CORE7-Xpa-Dna (Ap), PDB code: 8eby:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Xpc Release From CORE7-Xpa-Dna (Ap)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Xpc Release From CORE7-Xpa-Dna (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1000 b:311.8 occ:1.00 FE1 B:SF41000 0.0 311.8 1.0 SG B:CYS116 2.3 263.3 1.0 S2 B:SF41000 2.3 311.8 1.0 S4 B:SF41000 2.3 311.8 1.0 S3 B:SF41000 2.3 311.8 1.0 FE3 B:SF41000 2.7 311.8 1.0 FE4 B:SF41000 2.7 311.8 1.0 FE2 B:SF41000 2.7 311.8 1.0 CB B:CYS116 3.5 263.3 1.0 S1 B:SF41000 3.9 311.8 1.0 CA B:CYS116 4.0 263.3 1.0 N B:ILE117 4.3 271.1 1.0 CD2 B:HIS118 4.5 280.7 1.0 C B:CYS116 4.7 263.3 1.0 CG B:HIS118 4.7 280.7 1.0 N B:HIS118 4.8 280.7 1.0 CB B:HIS118 4.8 280.7 1.0 O B:LEU115 4.8 246.7 1.0 SG B:CYS134 4.8 304.0 1.0 SG B:CYS155 4.9 300.2 1.0 SG B:CYS190 4.9 271.0 1.0

Iron binding site 2 out of 4 in the Xpc Release From CORE7-Xpa-Dna (Ap)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Xpc Release From CORE7-Xpa-Dna (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1000 b:311.8 occ:1.00 FE2 B:SF41000 0.0 311.8 1.0 SG B:CYS155 2.3 300.2 1.0 S1 B:SF41000 2.3 311.8 1.0 S3 B:SF41000 2.3 311.8 1.0 S4 B:SF41000 2.3 311.8 1.0 FE4 B:SF41000 2.7 311.8 1.0 FE3 B:SF41000 2.7 311.8 1.0 FE1 B:SF41000 2.7 311.8 1.0 CB B:CYS155 3.5 300.2 1.0 NE2 B:HIS118 3.9 280.7 1.0 S2 B:SF41000 3.9 311.8 1.0 CD2 B:HIS118 3.9 280.7 1.0 CD1 B:PHE157 4.4 282.7 1.0 CE1 B:HIS118 4.6 280.7 1.0 CG B:HIS118 4.6 280.7 1.0 SG B:CYS190 4.7 271.0 1.0 SG B:CYS134 4.8 304.0 1.0 CA B:CYS155 4.8 300.2 1.0 SG B:CYS116 4.8 263.3 1.0 CG2 B:THR138 4.8 310.0 1.0 CB B:CYS190 4.9 271.0 1.0 CB B:PHE157 4.9 282.7 1.0 ND1 B:HIS118 5.0 280.7 1.0

Iron binding site 3 out of 4 in the Xpc Release From CORE7-Xpa-Dna (Ap)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Xpc Release From CORE7-Xpa-Dna (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1000 b:311.8 occ:1.00 FE3 B:SF41000 0.0 311.8 1.0 SG B:CYS134 2.3 304.0 1.0 S1 B:SF41000 2.3 311.8 1.0 S2 B:SF41000 2.3 311.8 1.0 S4 B:SF41000 2.3 311.8 1.0 FE4 B:SF41000 2.7 311.8 1.0 FE1 B:SF41000 2.7 311.8 1.0 FE2 B:SF41000 2.7 311.8 1.0 CB B:CYS134 3.2 304.0 1.0 S3 B:SF41000 3.9 311.8 1.0 CA B:CYS134 3.9 304.0 1.0 O B:CYS134 4.6 304.0 1.0 SG B:CYS190 4.6 271.0 1.0 C B:CYS134 4.7 304.0 1.0 CG2 B:THR138 4.7 310.0 1.0 SG B:CYS116 4.7 263.3 1.0 SG B:CYS155 4.7 300.2 1.0

Iron binding site 4 out of 4 in the Xpc Release From CORE7-Xpa-Dna (Ap)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Xpc Release From CORE7-Xpa-Dna (Ap) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1000 b:311.8 occ:1.00 FE4 B:SF41000 0.0 311.8 1.0 SG B:CYS190 2.3 271.0 1.0 S1 B:SF41000 2.3 311.8 1.0 S2 B:SF41000 2.3 311.8 1.0 S3 B:SF41000 2.3 311.8 1.0 FE3 B:SF41000 2.7 311.8 1.0 FE2 B:SF41000 2.7 311.8 1.0 FE1 B:SF41000 2.7 311.8 1.0 CB B:CYS190 3.2 271.0 1.0 S4 B:SF41000 3.9 311.8 1.0 CA B:CYS190 4.1 271.0 1.0 CD B:PRO191 4.6 253.9 1.0 SG B:CYS134 4.6 304.0 1.0 SG B:CYS155 4.7 300.2 1.0 SG B:CYS116 4.8 263.3 1.0 C B:CYS190 4.8 271.0 1.0 N B:PRO191 4.9 253.9 1.0 CE2 B:PHE193 4.9 258.6 1.0

J.Kim, C.L.Li, X.Chen, Y.Cui, F.M.Golebiowski, H.Wang, F.Hanaoka, K.Sugasawa, W.Yang. Lesion Recognition By Xpc, Tfiih and Xpa in Dna Excision Repair Nature 2023.
ISSN: ESSN 1476-4687