Atomistry » Iron » PDB 8e5f-8esu » 8emq
Atomistry »
  Iron »
    PDB 8e5f-8esu »
      8emq »

Iron in PDB 8emq: Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.

Other elements in 8emq:

The structure of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. (pdb code 8emq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera., PDB code: 8emq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 1 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:0.22
NE2 B:HIS173 2.8 18.8 1.0
NE2 C:HIS173 2.9 18.8 1.0
NE2 A:HIS173 2.9 18.8 1.0
NE2 H:HIS173 2.9 18.8 1.0
CE1 B:HIS173 3.5 18.6 1.0
CE1 C:HIS173 3.5 18.6 1.0
CE1 A:HIS173 3.5 18.6 1.0
CE1 H:HIS173 3.5 18.6 1.0
CD2 B:LEU169 3.9 18.8 1.0
CD2 A:LEU169 3.9 18.8 1.0
CD2 C:LEU169 4.0 18.8 1.0
CD2 H:LEU169 4.0 18.8 1.0
CD2 B:HIS173 4.0 19.2 1.0
CD2 C:HIS173 4.0 19.2 1.0
CD2 A:HIS173 4.1 19.2 1.0
CD2 H:HIS173 4.1 19.2 1.0
ND1 B:HIS173 4.7 17.4 1.0
ND1 C:HIS173 4.7 17.4 1.0
CD1 B:LEU169 4.7 20.2 1.0
ND1 A:HIS173 4.8 17.4 1.0
CD1 A:LEU169 4.8 20.2 1.0
CD1 C:LEU169 4.8 20.2 1.0
ND1 H:HIS173 4.8 17.4 1.0
CD1 H:LEU169 4.8 20.2 1.0
CG B:LEU169 4.9 17.5 1.0
CG A:LEU169 4.9 17.5 1.0
CG C:LEU169 5.0 17.5 1.0
CG H:LEU169 5.0 17.5 1.0

Iron binding site 2 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 2 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:30.0
occ:0.23
NE2 E:HIS173 2.8 18.8 1.0
NE2 N:HIS173 2.9 18.8 1.0
NE2 D:HIS173 2.9 18.8 1.0
NE2 M:HIS173 2.9 18.8 1.0
CE1 E:HIS173 3.5 18.6 1.0
CE1 N:HIS173 3.5 18.6 1.0
CE1 D:HIS173 3.5 18.6 1.0
CE1 M:HIS173 3.5 18.6 1.0
CD2 E:LEU169 3.9 18.8 1.0
CD2 D:LEU169 3.9 18.8 1.0
CD2 N:LEU169 4.0 18.8 1.0
CD2 M:LEU169 4.0 18.8 1.0
CD2 E:HIS173 4.0 19.2 1.0
CD2 N:HIS173 4.0 19.2 1.0
CD2 D:HIS173 4.1 19.2 1.0
CD2 M:HIS173 4.1 19.2 1.0
ND1 E:HIS173 4.7 17.4 1.0
ND1 N:HIS173 4.7 17.4 1.0
CD1 E:LEU169 4.7 20.2 1.0
ND1 D:HIS173 4.8 17.4 1.0
CD1 D:LEU169 4.8 20.2 1.0
CD1 N:LEU169 4.8 20.2 1.0
ND1 M:HIS173 4.8 17.4 1.0
CD1 M:LEU169 4.8 20.2 1.0
CG E:LEU169 4.9 17.5 1.0
CG D:LEU169 4.9 17.5 1.0
CG N:LEU169 5.0 17.5 1.0
CG M:LEU169 5.0 17.5 1.0

Iron binding site 3 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 3 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe202

b:30.0
occ:0.22
NE2 V:HIS173 2.8 18.8 1.0
NE2 G:HIS173 2.9 18.8 1.0
NE2 X:HIS173 2.9 18.8 1.0
NE2 F:HIS173 2.9 18.8 1.0
CE1 V:HIS173 3.5 18.6 1.0
CE1 G:HIS173 3.5 18.6 1.0
CE1 X:HIS173 3.5 18.6 1.0
CE1 F:HIS173 3.5 18.6 1.0
CD2 V:LEU169 3.9 18.8 1.0
CD2 X:LEU169 3.9 18.8 1.0
CD2 G:LEU169 4.0 18.8 1.0
CD2 F:LEU169 4.0 18.8 1.0
CD2 V:HIS173 4.0 19.2 1.0
CD2 G:HIS173 4.0 19.2 1.0
CD2 X:HIS173 4.1 19.2 1.0
CD2 F:HIS173 4.1 19.2 1.0
ND1 V:HIS173 4.7 17.4 1.0
ND1 G:HIS173 4.7 17.4 1.0
CD1 V:LEU169 4.7 20.2 1.0
ND1 X:HIS173 4.8 17.4 1.0
CD1 X:LEU169 4.8 20.2 1.0
CD1 G:LEU169 4.8 20.2 1.0
ND1 F:HIS173 4.8 17.4 1.0
CD1 F:LEU169 4.8 20.2 1.0
CG V:LEU169 4.9 17.5 1.0
CG X:LEU169 4.9 17.5 1.0
CG G:LEU169 5.0 17.5 1.0
CG F:LEU169 5.0 17.5 1.0

Iron binding site 4 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 4 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:30.0
occ:0.23
NE2 I:HIS173 2.8 18.8 1.0
NE2 K:HIS173 2.9 18.8 1.0
NE2 W:HIS173 2.9 18.8 1.0
NE2 O:HIS173 2.9 18.8 1.0
CE1 I:HIS173 3.5 18.6 1.0
CE1 K:HIS173 3.5 18.6 1.0
CE1 W:HIS173 3.5 18.6 1.0
CE1 O:HIS173 3.5 18.6 1.0
CD2 I:LEU169 3.9 18.8 1.0
CD2 W:LEU169 3.9 18.8 1.0
CD2 K:LEU169 4.0 18.8 1.0
CD2 O:LEU169 4.0 18.8 1.0
CD2 I:HIS173 4.0 19.2 1.0
CD2 K:HIS173 4.0 19.2 1.0
CD2 W:HIS173 4.1 19.2 1.0
CD2 O:HIS173 4.1 19.2 1.0
ND1 I:HIS173 4.7 17.4 1.0
ND1 K:HIS173 4.7 17.4 1.0
CD1 I:LEU169 4.7 20.2 1.0
ND1 W:HIS173 4.8 17.4 1.0
CD1 W:LEU169 4.8 20.2 1.0
CD1 K:LEU169 4.8 20.2 1.0
ND1 O:HIS173 4.8 17.4 1.0
CD1 O:LEU169 4.8 20.2 1.0
CG I:LEU169 4.9 17.5 1.0
CG W:LEU169 4.9 17.5 1.0
CG K:LEU169 5.0 17.5 1.0
CG O:LEU169 5.0 17.5 1.0

Iron binding site 5 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 5 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:30.0
occ:0.22
NE2 J:HIS173 2.8 18.8 1.0
NE2 L:HIS173 2.9 18.8 1.0
NE2 P:HIS173 2.9 18.8 1.0
NE2 Q:HIS173 2.9 18.8 1.0
CE1 J:HIS173 3.5 18.6 1.0
CE1 L:HIS173 3.5 18.6 1.0
CE1 P:HIS173 3.5 18.6 1.0
CE1 Q:HIS173 3.5 18.6 1.0
CD2 J:LEU169 3.9 18.8 1.0
CD2 P:LEU169 3.9 18.8 1.0
CD2 L:LEU169 4.0 18.8 1.0
CD2 Q:LEU169 4.0 18.8 1.0
CD2 J:HIS173 4.0 19.2 1.0
CD2 L:HIS173 4.0 19.2 1.0
CD2 P:HIS173 4.1 19.2 1.0
CD2 Q:HIS173 4.1 19.2 1.0
ND1 J:HIS173 4.7 17.4 1.0
ND1 L:HIS173 4.7 17.4 1.0
CD1 J:LEU169 4.7 20.2 1.0
ND1 P:HIS173 4.8 17.4 1.0
CD1 P:LEU169 4.8 20.2 1.0
CD1 L:LEU169 4.8 20.2 1.0
ND1 Q:HIS173 4.8 17.4 1.0
CD1 Q:LEU169 4.8 20.2 1.0
CG J:LEU169 4.9 17.5 1.0
CG P:LEU169 4.9 17.5 1.0
CG L:LEU169 5.0 17.5 1.0
CG Q:LEU169 5.0 17.5 1.0

Iron binding site 6 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 6 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe202

b:30.0
occ:0.22
NE2 U:HIS173 2.8 18.8 1.0
NE2 R:HIS173 2.9 18.8 1.0
NE2 T:HIS173 2.9 18.8 1.0
NE2 S:HIS173 2.9 18.8 1.0
CE1 U:HIS173 3.5 18.6 1.0
CE1 R:HIS173 3.5 18.6 1.0
CE1 T:HIS173 3.5 18.6 1.0
CE1 S:HIS173 3.5 18.6 1.0
CD2 U:LEU169 3.9 18.8 1.0
CD2 T:LEU169 3.9 18.8 1.0
CD2 R:LEU169 4.0 18.8 1.0
CD2 S:LEU169 4.0 18.8 1.0
CD2 U:HIS173 4.0 19.2 1.0
CD2 R:HIS173 4.0 19.2 1.0
CD2 T:HIS173 4.1 19.2 1.0
CD2 S:HIS173 4.1 19.2 1.0
ND1 U:HIS173 4.7 17.4 1.0
ND1 R:HIS173 4.7 17.4 1.0
CD1 U:LEU169 4.7 20.2 1.0
ND1 T:HIS173 4.8 17.4 1.0
CD1 T:LEU169 4.8 20.2 1.0
CD1 R:LEU169 4.8 20.2 1.0
ND1 S:HIS173 4.8 17.4 1.0
CD1 S:LEU169 4.8 20.2 1.0
CG U:LEU169 4.9 17.5 1.0
CG T:LEU169 4.9 17.5 1.0
CG R:LEU169 5.0 17.5 1.0
CG S:LEU169 5.0 17.5 1.0

Reference:

R.Peng, X.Fu, J.H.Mendez, P.S.Randolph, B.E.Bammes, S.M.Stagg. Characterizing the Resolution and Throughput of the Apollo Direct Electron Detector J Struct Biol X 2022.
ISSN: ESSN 2590-1524
DOI: 10.1016/J.YJSBX.2022.100080
Page generated: Thu Aug 7 16:29:20 2025

Last articles

Mg in 2ISI
Mg in 2ITN
Mg in 2ISP
Mg in 2ISO
Mg in 2IOU
Mg in 2IS4
Mg in 2IOH
Mg in 2IQQ
Mg in 2IQ1
Mg in 2IOR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy