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Iron in PDB 8ey3: Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37

Protein crystallography data

The structure of Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37, PDB code: 8ey3 was solved by K.Michalska, L.Stols, W.Eschenfeldt, C.W.Goulding, C.S.Hayes, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.15 / 1.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 27.386, 35.753, 50.34, 90, 90, 90
R / Rfree (%) 10.3 / 11

Other elements in 8ey3:

The structure of Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37 also contains other interesting chemical elements:

Sodium (Na) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37 (pdb code 8ey3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37, PDB code: 8ey3:

Iron binding site 1 out of 1 in 8ey3

Go back to Iron Binding Sites List in 8ey3
Iron binding site 1 out of 1 in the Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:14.6
occ:1.00
SG A:CYS29 2.3 14.8 1.0
SG A:CYS12 2.3 15.1 1.0
SG A:CYS26 2.3 14.3 1.0
SG A:CYS9 2.4 14.4 1.0
H A:CYS12 3.0 18.5 1.0
HB3 A:CYS9 3.1 18.1 1.0
HB3 A:CYS26 3.1 17.6 1.0
CB A:CYS26 3.1 14.7 1.0
HB2 A:CYS26 3.1 17.6 1.0
CB A:CYS9 3.1 15.1 1.0
HB3 A:CYS12 3.2 18.9 1.0
HB2 A:CYS9 3.2 18.1 1.0
HB3 A:CYS29 3.2 19.2 1.0
H A:CYS29 3.3 18.7 1.0
CB A:CYS12 3.4 15.7 1.0
CB A:CYS29 3.4 16.0 1.0
HB A:ILE28 3.7 18.7 1.0
HB3 A:CYS11 3.7 18.9 1.0
N A:CYS12 3.7 15.4 1.0
N A:CYS29 3.9 15.6 1.0
HB3 A:TRP31 3.9 17.6 1.0
HG1 A:THR16 4.0 19.2 1.0
CA A:CYS12 4.1 15.4 1.0
H A:TRP31 4.1 17.6 1.0
HB2 A:CYS12 4.2 18.9 1.0
HB2 A:CYS29 4.2 19.2 1.0
CA A:CYS29 4.2 16.0 1.0
H A:CYS11 4.5 18.5 1.0
H A:ILE28 4.5 18.0 1.0
CA A:CYS26 4.6 14.3 1.0
CA A:CYS9 4.6 15.1 1.0
H A:GLY13 4.6 18.7 1.0
CB A:ILE28 4.6 15.6 1.0
HB2 A:TRP31 4.6 17.6 1.0
H A:GLY30 4.6 18.6 1.0
CB A:CYS11 4.6 15.8 1.0
HG22 A:ILE28 4.6 19.5 1.0
OG1 A:THR16 4.7 16.0 1.0
HB2 A:ASN14 4.7 19.4 1.0
HD22 A:ASN14 4.7 19.4 1.0
H A:ASN14 4.7 18.4 1.0
CB A:TRP31 4.7 14.7 1.0
C A:CYS29 4.8 15.7 1.0
C A:CYS11 4.8 15.8 1.0
HA A:CYS12 4.9 18.6 1.0
HA A:CYS26 4.9 17.2 1.0
C A:ILE28 4.9 16.4 1.0
O A:HOH274 4.9 17.4 0.9
C A:CYS12 4.9 15.7 1.0
N A:GLY30 4.9 15.5 1.0
HD12 A:ILE28 4.9 20.3 1.0
N A:TRP31 4.9 14.7 1.0
HA A:CYS9 4.9 18.1 1.0
N A:GLY13 5.0 15.6 1.0

Reference:

K.Michalska, L.Stols, W.Eschenfeldt, C.W.Goulding, C.S.Hayes, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), Center For Structural Genomics Of Infectious Diseases(Csgid). Contact-Dependent Growth Inhibition (Cdi) Immunity Protein From E. Coli O32:H37 To Be Published.
Page generated: Thu Aug 7 16:45:26 2025

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