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Iron in PDB 8fjq: Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant

Protein crystallography data

The structure of Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant, PDB code: 8fjq was solved by S.Khadka, P.Li, B.V.Geisbrecht, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.03 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.632, 92.405, 97.259, 90, 90, 90
R / Rfree (%) 17.2 / 20

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant (pdb code 8fjq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant, PDB code: 8fjq:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8fjq

Go back to Iron Binding Sites List in 8fjq
Iron binding site 1 out of 2 in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:26.2
occ:1.00
FE A:HEM501 0.0 26.2 1.0
NB A:HEM501 2.0 21.0 1.0
NA A:HEM501 2.0 22.4 1.0
ND A:HEM501 2.0 23.7 1.0
NC A:HEM501 2.1 24.8 1.0
NE2 A:HIS312 2.1 29.0 1.0
O A:HOH737 2.5 36.1 1.0
C1B A:HEM501 3.0 24.3 1.0
C1C A:HEM501 3.0 24.9 1.0
C4A A:HEM501 3.1 25.2 1.0
C1D A:HEM501 3.1 25.1 1.0
C1A A:HEM501 3.1 21.9 1.0
C4D A:HEM501 3.1 21.4 1.0
C4B A:HEM501 3.1 24.4 1.0
CD2 A:HIS312 3.1 25.1 1.0
C4C A:HEM501 3.1 23.2 1.0
CE1 A:HIS312 3.1 27.1 1.0
CHB A:HEM501 3.4 23.4 1.0
CHA A:HEM501 3.4 22.9 1.0
CHD A:HEM501 3.4 24.8 1.0
CHC A:HEM501 3.5 22.9 1.0
NH1 A:ARG327 4.1 26.1 1.0
ND1 A:HIS312 4.2 25.6 1.0
CG A:HIS312 4.2 24.2 1.0
C2C A:HEM501 4.3 25.6 1.0
C2B A:HEM501 4.3 22.3 1.0
C2D A:HEM501 4.3 25.8 1.0
C3A A:HEM501 4.3 21.3 1.0
C3D A:HEM501 4.3 25.0 1.0
C3C A:HEM501 4.3 23.9 1.0
C2A A:HEM501 4.3 24.2 1.0
C3B A:HEM501 4.3 25.2 1.0
CD A:ARG327 5.0 24.4 1.0
CE1 A:PHE348 5.0 29.6 1.0
CZ A:ARG327 5.0 26.6 1.0

Iron binding site 2 out of 2 in 8fjq

Go back to Iron Binding Sites List in 8fjq
Iron binding site 2 out of 2 in the Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:25.0
occ:1.00
FE B:HEM501 0.0 25.0 1.0
ND B:HEM501 2.0 25.1 1.0
NA B:HEM501 2.0 23.8 1.0
NB B:HEM501 2.0 25.6 1.0
NC B:HEM501 2.0 22.9 1.0
NE2 B:HIS312 2.2 28.1 1.0
O B:HOH730 2.6 44.7 1.0
C1D B:HEM501 3.0 27.1 1.0
C1A B:HEM501 3.0 26.6 1.0
C4D B:HEM501 3.0 24.4 1.0
C4A B:HEM501 3.0 24.8 1.0
C1B B:HEM501 3.1 23.6 1.0
C1C B:HEM501 3.1 23.6 1.0
C4C B:HEM501 3.1 29.2 1.0
C4B B:HEM501 3.1 26.8 1.0
CD2 B:HIS312 3.1 28.3 1.0
CE1 B:HIS312 3.2 25.8 1.0
CHA B:HEM501 3.4 26.9 1.0
CHD B:HEM501 3.4 27.6 1.0
CHB B:HEM501 3.4 25.4 1.0
CHC B:HEM501 3.5 24.1 1.0
NH1 B:ARG327 4.1 26.2 1.0
C2D B:HEM501 4.2 31.1 1.0
C3D B:HEM501 4.2 25.4 1.0
C2A B:HEM501 4.2 23.3 1.0
C3A B:HEM501 4.2 23.0 1.0
C2C B:HEM501 4.3 28.9 1.0
C3C B:HEM501 4.3 27.8 1.0
C2B B:HEM501 4.3 24.2 1.0
ND1 B:HIS312 4.3 28.7 1.0
CG B:HIS312 4.3 27.6 1.0
C3B B:HEM501 4.3 22.0 1.0
CD B:ARG327 4.8 27.9 1.0
CE1 B:PHE348 4.9 36.2 1.0
CZ B:ARG327 5.0 26.6 1.0

Reference:

S.Khadka, B.Geisbrecht, P.Li. Structure of Thermomonospora Curvata Heme-Containing Dyp-Type Peroxidase E293G Mutant To Be Published.
Page generated: Thu Aug 7 17:22:25 2025

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