Atomistry » Iron » PDB 8gbt-8hbe » 8gf4
Atomistry »
  Iron »
    PDB 8gbt-8hbe »
      8gf4 »

Iron in PDB 8gf4: Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme

Protein crystallography data

The structure of Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme, PDB code: 8gf4 was solved by D.Kumaran, E.C.Blaby, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.25 / 3.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 42.976, 42.976, 379.484, 90, 90, 120
R / Rfree (%) 20.1 / 27.9

Other elements in 8gf4:

The structure of Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme (pdb code 8gf4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme, PDB code: 8gf4:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8gf4

Go back to Iron Binding Sites List in 8gf4
Iron binding site 1 out of 2 in the Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:37.7
occ:1.00
FE A:HEM203 0.0 37.7 1.0
NE2 B:HIS79 2.0 45.0 1.0
NE2 A:HIS79 2.0 50.3 1.0
ND A:HEM203 2.1 34.2 1.0
NC A:HEM203 2.1 34.3 1.0
NA A:HEM203 2.1 34.9 1.0
NB A:HEM203 2.1 39.4 1.0
CE1 A:HIS79 2.9 51.5 1.0
CE1 B:HIS79 2.9 44.7 1.0
C4A A:HEM203 3.1 36.7 1.0
C1D A:HEM203 3.1 34.5 1.0
CD2 B:HIS79 3.1 41.9 1.0
C1C A:HEM203 3.1 37.8 1.0
C4C A:HEM203 3.1 34.8 1.0
C4B A:HEM203 3.1 43.1 1.0
C4D A:HEM203 3.1 34.1 1.0
C1B A:HEM203 3.1 40.3 1.0
C1A A:HEM203 3.1 34.1 1.0
CD2 A:HIS79 3.1 43.0 1.0
CHC A:HEM203 3.4 40.8 1.0
CHB A:HEM203 3.4 40.0 1.0
CHD A:HEM203 3.5 33.0 1.0
CHA A:HEM203 3.5 32.7 1.0
ND1 B:HIS79 4.1 44.2 1.0
ND1 A:HIS79 4.1 50.8 1.0
CG B:HIS79 4.1 40.2 1.0
CG A:HIS79 4.2 42.8 1.0
C2D A:HEM203 4.4 35.7 1.0
C3C A:HEM203 4.4 37.7 1.0
C3A A:HEM203 4.4 35.3 1.0
C2A A:HEM203 4.4 34.1 1.0
C3B A:HEM203 4.4 45.0 1.0
C3D A:HEM203 4.4 35.1 1.0
C2C A:HEM203 4.4 36.9 1.0
C2B A:HEM203 4.4 41.9 1.0
CD1 B:ILE83 4.7 43.8 1.0

Iron binding site 2 out of 2 in 8gf4

Go back to Iron Binding Sites List in 8gf4
Iron binding site 2 out of 2 in the Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:55.1
occ:1.00
FE C:HEM202 0.0 55.1 1.0
NE2 D:HIS79 2.0 66.5 1.0
NE2 C:HIS79 2.0 71.7 1.0
NA C:HEM202 2.0 46.1 1.0
ND C:HEM202 2.0 49.8 1.0
NB C:HEM202 2.1 55.7 1.0
NC C:HEM202 2.1 48.3 1.0
CE1 C:HIS79 2.8 67.3 1.0
CD2 D:HIS79 2.9 65.4 1.0
C4A C:HEM202 3.0 53.5 1.0
C1D C:HEM202 3.0 48.7 1.0
C4D C:HEM202 3.0 48.3 1.0
C1A C:HEM202 3.0 48.3 1.0
C4C C:HEM202 3.1 47.1 1.0
C1B C:HEM202 3.1 57.8 1.0
CE1 D:HIS79 3.1 66.3 1.0
C4B C:HEM202 3.1 58.3 1.0
C1C C:HEM202 3.2 48.9 1.0
CD2 C:HIS79 3.2 67.7 1.0
CHD C:HEM202 3.4 48.9 1.0
CHB C:HEM202 3.4 56.3 1.0
CHA C:HEM202 3.4 48.2 1.0
CHC C:HEM202 3.5 48.3 1.0
ND1 C:HIS79 4.0 68.4 1.0
CG D:HIS79 4.1 63.4 1.0
ND1 D:HIS79 4.1 63.4 1.0
CG C:HIS79 4.2 66.1 1.0
C3D C:HEM202 4.3 47.7 1.0
C3A C:HEM202 4.3 52.3 1.0
C2D C:HEM202 4.3 49.9 1.0
C2A C:HEM202 4.4 51.3 1.0
C3C C:HEM202 4.4 51.3 1.0
C2B C:HEM202 4.4 67.0 1.0
C3B C:HEM202 4.4 71.7 1.0
C2C C:HEM202 4.5 50.9 1.0
CD1 D:ILE83 4.8 69.2 1.0

Reference:

D.Kumaran, E.C.Blaby. Crystal Structure of Domain Related to Iron (Dri) in Complex with Heme. To Be Published.
Page generated: Sat Aug 10 04:51:07 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy