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Iron in PDB 8i6y: Crystal Structure of Arabidopsis Thaliana LOX1

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana LOX1

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana LOX1:
1.13.11.58;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana LOX1, PDB code: 8i6y was solved by X.Liu, L.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.68 / 3.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 116.368, 119.349, 135.36, 90, 90, 90
R / Rfree (%) 23.3 / 25.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Arabidopsis Thaliana LOX1 (pdb code 8i6y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Arabidopsis Thaliana LOX1, PDB code: 8i6y:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8i6y

Go back to Iron Binding Sites List in 8i6y
Iron binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana LOX1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Arabidopsis Thaliana LOX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe901

b:35.1
occ:1.00
NE2 A:HIS519 1.7 24.6 1.0
NE2 A:HIS524 1.8 27.6 1.0
O A:ILE859 1.8 28.6 1.0
OD1 A:ASN715 2.1 36.0 1.0
NE2 A:HIS711 2.1 28.7 1.0
CE1 A:HIS519 2.4 35.6 1.0
CE1 A:HIS524 2.6 36.6 1.0
C A:ILE859 2.8 44.3 1.0
OXT A:ILE859 2.8 47.0 1.0
CD2 A:HIS519 2.9 36.2 1.0
CD2 A:HIS524 3.0 43.7 1.0
CE1 A:HIS711 3.1 37.9 1.0
CD2 A:HIS711 3.1 39.0 1.0
CG A:ASN715 3.2 36.6 1.0
ND1 A:HIS519 3.6 33.4 1.0
ND1 A:HIS524 3.8 30.0 1.0
CG A:HIS519 3.9 36.1 1.0
CG A:HIS524 4.0 36.9 1.0
CB A:ASN715 4.1 34.0 1.0
ND1 A:HIS711 4.2 32.2 1.0
CG A:HIS711 4.2 35.2 1.0
ND2 A:ASN715 4.2 33.0 1.0
CA A:ILE859 4.3 38.3 1.0
CG1 A:VAL857 4.5 35.5 1.0
N A:ILE859 4.8 35.7 1.0

Iron binding site 2 out of 2 in 8i6y

Go back to Iron Binding Sites List in 8i6y
Iron binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana LOX1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Arabidopsis Thaliana LOX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe901

b:42.2
occ:1.00
NE2 B:HIS519 1.7 35.9 1.0
NE2 B:HIS524 1.8 33.0 1.0
O B:ILE859 1.8 36.1 1.0
OD1 B:ASN715 2.1 50.2 1.0
NE2 B:HIS711 2.1 34.9 1.0
CE1 B:HIS519 2.4 44.6 1.0
CE1 B:HIS524 2.6 38.5 1.0
C B:ILE859 2.8 48.4 1.0
OXT B:ILE859 2.8 50.7 1.0
CD2 B:HIS519 2.9 47.3 1.0
CD2 B:HIS524 3.0 45.4 1.0
CD2 B:HIS711 3.1 44.3 1.0
CE1 B:HIS711 3.1 46.3 1.0
CG B:ASN715 3.2 51.6 1.0
ND1 B:HIS519 3.6 45.1 1.0
ND1 B:HIS524 3.8 36.1 1.0
CG B:HIS519 3.9 44.9 1.0
CG B:HIS524 4.0 41.0 1.0
CB B:ASN715 4.1 49.3 1.0
ND1 B:HIS711 4.2 48.6 1.0
CG B:HIS711 4.2 45.0 1.0
ND2 B:ASN715 4.2 45.4 1.0
CA B:ILE859 4.3 39.9 1.0
CG1 B:VAL857 4.5 41.2 1.0
N B:ILE859 4.8 42.7 1.0

Reference:

Y.Liu, X.Liu, T.Liao, L.Liu, X.Huang. Uv-B Light Signal Mediates Stomatal Closure By Activating the 9-Lipoxygenase Pathway To Be Published.
Page generated: Thu Aug 7 17:52:25 2025

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