Iron in PDB 8iug: Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii

The structure of Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii also contains other interesting chemical elements:

Magnesium	(Mg)	48 atoms
Calcium	(Ca)	1 atom
Manganese	(Mn)	1 atom

The binding sites of Iron atom in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii (pdb code 8iug). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii, PDB code: 8iug:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:72.8 occ:1.00 FE C:HEC402 0.0 72.8 1.0 NE2 C:HIS122 2.0 75.9 1.0 NC C:HEC402 2.1 72.8 1.0 NA C:HEC402 2.1 72.8 1.0 ND C:HEC402 2.1 72.8 1.0 NB C:HEC402 2.1 72.8 1.0 CD2 C:HIS122 2.7 75.9 1.0 SD C:MET106 2.7 68.3 1.0 C4D C:HEC402 3.1 72.8 1.0 C1A C:HEC402 3.1 72.8 1.0 C1C C:HEC402 3.1 72.8 1.0 C1D C:HEC402 3.1 72.8 1.0 C4C C:HEC402 3.1 72.8 1.0 C4B C:HEC402 3.1 72.8 1.0 C4A C:HEC402 3.1 72.8 1.0 C1B C:HEC402 3.1 72.8 1.0 CE1 C:HIS122 3.2 75.9 1.0 CHA C:HEC402 3.4 72.8 1.0 CHC C:HEC402 3.4 72.8 1.0 CHD C:HEC402 3.4 72.8 1.0 CHB C:HEC402 3.5 72.8 1.0 CG C:MET106 3.6 68.3 1.0 CE C:MET106 3.9 68.3 1.0 CG C:HIS122 4.0 75.9 1.0 CB C:MET106 4.1 68.3 1.0 ND1 C:HIS122 4.1 75.9 1.0 C2A C:HEC402 4.3 72.8 1.0 C2C C:HEC402 4.3 72.8 1.0 C3D C:HEC402 4.3 72.8 1.0 C3C C:HEC402 4.3 72.8 1.0 C2D C:HEC402 4.3 72.8 1.0 C3A C:HEC402 4.3 72.8 1.0 C3B C:HEC402 4.3 72.8 1.0 C2B C:HEC402 4.3 72.8 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:54.8 occ:1.00 FE C:HEC403 0.0 54.8 1.0 NA C:HEC403 2.1 54.8 1.0 NC C:HEC403 2.1 54.8 1.0 NB C:HEC403 2.1 54.8 1.0 ND C:HEC403 2.1 54.8 1.0 NE2 C:HIS175 2.2 52.5 1.0 SD C:MET145 2.9 56.1 1.0 C1A C:HEC403 3.1 54.8 1.0 C4D C:HEC403 3.1 54.8 1.0 C4C C:HEC403 3.1 54.8 1.0 C1C C:HEC403 3.1 54.8 1.0 C1D C:HEC403 3.1 54.8 1.0 C1B C:HEC403 3.1 54.8 1.0 C4B C:HEC403 3.1 54.8 1.0 C4A C:HEC403 3.1 54.8 1.0 CD2 C:HIS175 3.2 52.5 1.0 CE1 C:HIS175 3.3 52.5 1.0 CHA C:HEC403 3.4 54.8 1.0 CHD C:HEC403 3.4 54.8 1.0 CHC C:HEC403 3.4 54.8 1.0 CHB C:HEC403 3.5 54.8 1.0 CE C:MET145 3.8 56.1 1.0 CG C:MET145 3.9 56.1 1.0 C2A C:HEC403 4.3 54.8 1.0 C3D C:HEC403 4.3 54.8 1.0 C3A C:HEC403 4.3 54.8 1.0 C2C C:HEC403 4.3 54.8 1.0 C3C C:HEC403 4.3 54.8 1.0 C2B C:HEC403 4.3 54.8 1.0 C2D C:HEC403 4.3 54.8 1.0 C3B C:HEC403 4.3 54.8 1.0 CG C:HIS175 4.3 52.5 1.0 ND1 C:HIS175 4.4 52.5 1.0 CB C:MET145 4.4 56.1 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:42.9 occ:1.00 FE C:HEC404 0.0 42.9 1.0 NE2 C:HIS244 2.0 29.1 1.0 NC C:HEC404 2.1 42.9 1.0 NA C:HEC404 2.1 42.9 1.0 ND C:HEC404 2.1 42.9 1.0 NB C:HEC404 2.1 42.9 1.0 SD C:MET229 2.9 29.5 1.0 CE1 C:HIS244 2.9 29.1 1.0 CD2 C:HIS244 3.0 29.1 1.0 C1D C:HEC404 3.1 42.9 1.0 C4D C:HEC404 3.1 42.9 1.0 C1B C:HEC404 3.1 42.9 1.0 C4C C:HEC404 3.1 42.9 1.0 C4A C:HEC404 3.1 42.9 1.0 C1C C:HEC404 3.1 42.9 1.0 C1A C:HEC404 3.1 42.9 1.0 C4B C:HEC404 3.1 42.9 1.0 CHD C:HEC404 3.4 42.9 1.0 CHB C:HEC404 3.4 42.9 1.0 CHA C:HEC404 3.4 42.9 1.0 CHC C:HEC404 3.5 42.9 1.0 CG C:MET229 3.8 29.5 1.0 CE C:MET229 4.0 29.5 1.0 ND1 C:HIS244 4.0 29.1 1.0 CG C:HIS244 4.1 29.1 1.0 C2B C:HEC404 4.3 42.9 1.0 C3D C:HEC404 4.3 42.9 1.0 C2D C:HEC404 4.3 42.9 1.0 C3A C:HEC404 4.3 42.9 1.0 C3C C:HEC404 4.3 42.9 1.0 C2C C:HEC404 4.3 42.9 1.0 C3B C:HEC404 4.3 42.9 1.0 C2A C:HEC404 4.3 42.9 1.0 CB C:MET229 4.5 29.5 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe405 b:42.9 occ:1.00 FE C:HEC405 0.0 42.9 1.0 NC C:HEC405 2.0 42.9 1.0 NA C:HEC405 2.1 42.9 1.0 ND C:HEC405 2.1 42.9 1.0 NB C:HEC405 2.1 42.9 1.0 NE2 C:HIS297 2.1 37.4 1.0 SD C:MET263 2.9 37.1 1.0 C1D C:HEC405 3.1 42.9 1.0 C4C C:HEC405 3.1 42.9 1.0 C1A C:HEC405 3.1 42.9 1.0 C4D C:HEC405 3.1 42.9 1.0 C1C C:HEC405 3.1 42.9 1.0 C4A C:HEC405 3.1 42.9 1.0 C1B C:HEC405 3.1 42.9 1.0 C4B C:HEC405 3.1 42.9 1.0 CE1 C:HIS297 3.1 37.4 1.0 CD2 C:HIS297 3.1 37.4 1.0 CHD C:HEC405 3.4 42.9 1.0 CHA C:HEC405 3.4 42.9 1.0 CHB C:HEC405 3.4 42.9 1.0 CHC C:HEC405 3.5 42.9 1.0 CG C:MET263 3.7 37.1 1.0 ND1 C:HIS297 4.2 37.4 1.0 CB C:MET263 4.2 37.1 1.0 CG C:HIS297 4.3 37.4 1.0 C2A C:HEC405 4.3 42.9 1.0 C3A C:HEC405 4.3 42.9 1.0 C2C C:HEC405 4.3 42.9 1.0 C3C C:HEC405 4.3 42.9 1.0 C2D C:HEC405 4.3 42.9 1.0 C3D C:HEC405 4.3 42.9 1.0 C2B C:HEC405 4.3 42.9 1.0 C3B C:HEC405 4.3 42.9 1.0 CE C:MET263 4.4 37.1 1.0 CE C:MET236 4.9 33.9 1.0

C.H.Qi, G.L.Wang, F.F.Wang, Y.Xin, M.J.Zou, M.T.Madigan, Z.Y.Wang-Otomo, F.Ma, L.J.Yu. New Insights on the Photocomplex of Roseiflexus Castenholzii Revealed From Comparisons of Native and Carotenoid-Depleted Complexes. J.Biol.Chem. V. 299 05057 2023.
ISSN: ESSN 1083-351X
PubMed: 37468106
DOI: 10.1016/J.JBC.2023.105057