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Iron in PDB 8iun: Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii

Other elements in 8iun:

The structure of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Magnesium (Mg) 48 atoms
Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii (pdb code 8iun). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii, PDB code: 8iun:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 8iun

Go back to Iron Binding Sites List in 8iun
Iron binding site 1 out of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:41.0
occ:1.00
FE C:HEC501 0.0 41.0 1.0
NC C:HEC501 2.0 41.0 1.0
NA C:HEC501 2.1 41.0 1.0
NE2 C:HIS122 2.1 43.0 1.0
NB C:HEC501 2.1 41.0 1.0
ND C:HEC501 2.1 41.0 1.0
CD2 C:HIS122 2.6 43.0 1.0
SD C:MET106 2.7 34.0 1.0
C1A C:HEC501 3.1 41.0 1.0
C1C C:HEC501 3.1 41.0 1.0
C4D C:HEC501 3.1 41.0 1.0
C4B C:HEC501 3.1 41.0 1.0
C4C C:HEC501 3.1 41.0 1.0
C1D C:HEC501 3.1 41.0 1.0
C4A C:HEC501 3.1 41.0 1.0
C1B C:HEC501 3.1 41.0 1.0
CE1 C:HIS122 3.3 43.0 1.0
CHA C:HEC501 3.4 41.0 1.0
CHC C:HEC501 3.4 41.0 1.0
CHD C:HEC501 3.4 41.0 1.0
CHB C:HEC501 3.5 41.0 1.0
CG C:MET106 3.7 34.0 1.0
CG C:HIS122 3.9 43.0 1.0
CE C:MET106 3.9 34.0 1.0
ND1 C:HIS122 4.2 43.0 1.0
CB C:MET106 4.2 34.0 1.0
C2A C:HEC501 4.3 41.0 1.0
C2C C:HEC501 4.3 41.0 1.0
C3A C:HEC501 4.3 41.0 1.0
C3C C:HEC501 4.3 41.0 1.0
C3B C:HEC501 4.3 41.0 1.0
C2B C:HEC501 4.3 41.0 1.0
C3D C:HEC501 4.3 41.0 1.0
C2D C:HEC501 4.3 41.0 1.0

Iron binding site 2 out of 4 in 8iun

Go back to Iron Binding Sites List in 8iun
Iron binding site 2 out of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe502

b:29.8
occ:1.00
FE C:HEC502 0.0 29.8 1.0
NC C:HEC502 2.1 29.8 1.0
NA C:HEC502 2.1 29.8 1.0
ND C:HEC502 2.1 29.8 1.0
NB C:HEC502 2.1 29.8 1.0
NE2 C:HIS175 2.3 23.4 1.0
SD C:MET145 3.0 26.4 1.0
C4D C:HEC502 3.1 29.8 1.0
C1A C:HEC502 3.1 29.8 1.0
C1C C:HEC502 3.1 29.8 1.0
C4C C:HEC502 3.1 29.8 1.0
C1D C:HEC502 3.1 29.8 1.0
C4B C:HEC502 3.1 29.8 1.0
C4A C:HEC502 3.1 29.8 1.0
C1B C:HEC502 3.1 29.8 1.0
CD2 C:HIS175 3.2 23.4 1.0
CE1 C:HIS175 3.3 23.4 1.0
CHA C:HEC502 3.4 29.8 1.0
CHD C:HEC502 3.4 29.8 1.0
CHC C:HEC502 3.4 29.8 1.0
CHB C:HEC502 3.5 29.8 1.0
CG C:MET145 3.8 26.4 1.0
CE C:MET145 3.9 26.4 1.0
C3D C:HEC502 4.3 29.8 1.0
C2A C:HEC502 4.3 29.8 1.0
CB C:MET145 4.3 26.4 1.0
C2C C:HEC502 4.3 29.8 1.0
C3C C:HEC502 4.3 29.8 1.0
C2D C:HEC502 4.3 29.8 1.0
C3A C:HEC502 4.3 29.8 1.0
C3B C:HEC502 4.3 29.8 1.0
C2B C:HEC502 4.3 29.8 1.0
CG C:HIS175 4.4 23.4 1.0
ND1 C:HIS175 4.4 23.4 1.0

Iron binding site 3 out of 4 in 8iun

Go back to Iron Binding Sites List in 8iun
Iron binding site 3 out of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe503

b:29.8
occ:1.00
FE C:HEC503 0.0 29.8 1.0
ND C:HEC503 2.1 29.8 1.0
NC C:HEC503 2.1 29.8 1.0
NB C:HEC503 2.1 29.8 1.0
NA C:HEC503 2.1 29.8 1.0
NE2 C:HIS244 2.2 17.5 1.0
CD2 C:HIS244 2.9 17.5 1.0
SD C:MET229 3.0 16.7 1.0
C4D C:HEC503 3.1 29.8 1.0
C1D C:HEC503 3.1 29.8 1.0
C1B C:HEC503 3.1 29.8 1.0
C1C C:HEC503 3.1 29.8 1.0
C4B C:HEC503 3.1 29.8 1.0
C4C C:HEC503 3.1 29.8 1.0
C4A C:HEC503 3.1 29.8 1.0
C1A C:HEC503 3.1 29.8 1.0
CE1 C:HIS244 3.3 17.5 1.0
CHD C:HEC503 3.4 29.8 1.0
CHA C:HEC503 3.4 29.8 1.0
CHC C:HEC503 3.4 29.8 1.0
CHB C:HEC503 3.5 29.8 1.0
CG C:MET229 3.9 16.7 1.0
CE C:MET229 4.0 16.7 1.0
CG C:HIS244 4.1 17.5 1.0
ND1 C:HIS244 4.2 17.5 1.0
C2B C:HEC503 4.3 29.8 1.0
C3D C:HEC503 4.3 29.8 1.0
C3A C:HEC503 4.3 29.8 1.0
C2D C:HEC503 4.3 29.8 1.0
C3B C:HEC503 4.3 29.8 1.0
C2A C:HEC503 4.3 29.8 1.0
C2C C:HEC503 4.3 29.8 1.0
C3C C:HEC503 4.3 29.8 1.0
CB C:MET229 4.6 16.7 1.0

Iron binding site 4 out of 4 in 8iun

Go back to Iron Binding Sites List in 8iun
Iron binding site 4 out of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe504

b:29.8
occ:1.00
FE C:HEC504 0.0 29.8 1.0
NA C:HEC504 2.1 29.8 1.0
NC C:HEC504 2.1 29.8 1.0
NB C:HEC504 2.1 29.8 1.0
ND C:HEC504 2.1 29.8 1.0
NE2 C:HIS297 2.1 14.7 1.0
SD C:MET263 2.9 14.7 1.0
CE1 C:HIS297 3.1 14.7 1.0
C1A C:HEC504 3.1 29.8 1.0
C4D C:HEC504 3.1 29.8 1.0
C1C C:HEC504 3.1 29.8 1.0
C4A C:HEC504 3.1 29.8 1.0
C4B C:HEC504 3.1 29.8 1.0
C1D C:HEC504 3.1 29.8 1.0
C4C C:HEC504 3.1 29.8 1.0
C1B C:HEC504 3.1 29.8 1.0
CD2 C:HIS297 3.1 14.7 1.0
CHA C:HEC504 3.4 29.8 1.0
CHC C:HEC504 3.4 29.8 1.0
CHD C:HEC504 3.5 29.8 1.0
CHB C:HEC504 3.5 29.8 1.0
CG C:MET263 3.7 14.7 1.0
ND1 C:HIS297 4.2 14.7 1.0
CG C:HIS297 4.3 14.7 1.0
CB C:MET263 4.3 14.7 1.0
C2A C:HEC504 4.3 29.8 1.0
C3A C:HEC504 4.3 29.8 1.0
C2C C:HEC504 4.3 29.8 1.0
C3D C:HEC504 4.3 29.8 1.0
C2B C:HEC504 4.3 29.8 1.0
C3C C:HEC504 4.3 29.8 1.0
C3B C:HEC504 4.3 29.8 1.0
C2D C:HEC504 4.3 29.8 1.0
CE C:MET263 4.4 14.7 1.0

Reference:

C.H.Qi, G.L.Wang, F.F.Wang, Y.Xin, M.J.Zou, M.T.Madigan, Z.Y.Wang-Otomo, F.Ma, L.J.Yu. New Insights on the Photocomplex of Roseiflexus Castenholzii Revealed From Comparisons of Native and Carotenoid-Depleted Complexes. J.Biol.Chem. V. 299 05057 2023.
ISSN: ESSN 1083-351X
PubMed: 37468106
DOI: 10.1016/J.JBC.2023.105057
Page generated: Sat Aug 10 06:25:07 2024

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