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Iron in PDB 8j7b: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)

Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)

All present enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2):
1.97.1.12;

Other elements in 8j7b:

The structure of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) also contains other interesting chemical elements:

Magnesium (Mg) 154 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) (pdb code 8j7b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2), PDB code: 8j7b:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8j7b

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Iron binding site 1 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:28.5
occ:1.00
 FE1 A:SF4854 0.0 28.5 1.0
S2 A:SF4854 2.3 22.2 1.0
S4 A:SF4854 2.3 46.8 1.0
S3 A:SF4854 2.3 27.6 1.0
FE3 A:SF4854 2.7 46.1 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
SG B:CYS559 2.9 32.9 1.0
CB B:CYS559 3.3 9.1 1.0
S1 A:SF4854 3.9 50.7 1.0
CA B:CYS559 4.8 9.2 1.0
N B:GLY561 4.8 8.6 1.0
C B:GLY561 4.9 11.9 1.0
CA B:GLY561 4.9 7.3 1.0
SG A:CYS573 4.9 15.6 1.0
O B:GLY561 4.9 20.9 1.0

Iron binding site 2 out of 12 in 8j7b

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Iron binding site 2 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:53.7
occ:1.00
 FE2 A:SF4854 0.0 53.7 1.0
S3 A:SF4854 2.3 27.6 1.0
S4 A:SF4854 2.3 46.8 1.0
S1 A:SF4854 2.3 50.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE3 A:SF4854 2.7 46.1 1.0
SG B:CYS568 2.9 37.1 1.0
CB B:CYS568 3.5 17.1 1.0
S2 A:SF4854 3.9 22.2 1.0
CA B:CYS568 3.9 7.5 1.0
CZ3 B:TRP667 4.0 12.3 1.0
N B:CYS568 4.4 7.1 1.0
CD1 A:ILE719 4.6 5.1 1.0
CH2 B:TRP667 4.7 3.6 1.0
CE3 B:TRP667 4.8 9.8 1.0
CB B:CYS559 5.0 9.1 1.0

Iron binding site 3 out of 12 in 8j7b

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Iron binding site 3 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:46.1
occ:1.00
 FE3 A:SF4854 0.0 46.1 1.0
S1 A:SF4854 2.3 50.7 1.0
S4 A:SF4854 2.3 46.8 1.0
S2 A:SF4854 2.3 22.2 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
SG A:CYS573 3.0 15.6 1.0
CB A:CYS573 3.3 3.9 1.0
S3 A:SF4854 3.9 27.6 1.0
CD1 A:ILE719 4.4 5.1 1.0
CA A:CYS573 4.7 4.5 1.0
CB B:PRO562 4.8 3.3 1.0
SG B:CYS568 4.9 37.1 1.0

Iron binding site 4 out of 12 in 8j7b

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Iron binding site 4 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:44.4
occ:1.00
 FE4 A:SF4854 0.0 44.4 1.0
S2 A:SF4854 2.3 22.2 1.0
S3 A:SF4854 2.3 27.6 1.0
S1 A:SF4854 2.3 50.7 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE3 A:SF4854 2.7 46.1 1.0
SG A:CYS582 2.9 29.5 1.0
CB A:CYS582 3.6 10.3 1.0
S4 A:SF4854 3.9 46.8 1.0
CZ3 B:TRP667 4.2 12.3 1.0
CE3 B:TRP667 4.2 9.8 1.0
CA A:CYS582 4.3 8.7 1.0
CB A:CYS573 4.7 3.9 1.0
CD1 B:ILE702 4.8 0.0 1.0
N A:CYS582 4.8 12.3 1.0

Iron binding site 5 out of 12 in 8j7b

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Iron binding site 5 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.9
occ:1.00
 FE1 C:SF4101 0.0 10.9 1.0
S2 C:SF4101 2.3 16.9 1.0
S4 C:SF4101 2.3 11.2 1.0
S3 C:SF4101 2.3 7.4 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE3 C:SF4101 2.7 14.4 1.0
SG C:CYS54 3.0 9.4 1.0
CB C:CYS54 3.6 8.6 1.0
S1 C:SF4101 3.9 13.4 1.0
N C:CYS54 4.0 6.8 1.0
CG2 C:VAL67 4.0 7.3 1.0
CA C:CYS54 4.4 4.0 1.0
N C:ARG53 4.4 8.5 1.0
CA C:LYS52 4.5 2.6 1.0
N C:LYS52 4.5 4.8 1.0
C C:LYS52 4.8 5.1 1.0
CD1 C:LEU26 4.9 6.5 1.0

Iron binding site 6 out of 12 in 8j7b

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Iron binding site 6 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:19.9
occ:1.00
 FE2 C:SF4101 0.0 19.9 1.0
S3 C:SF4101 2.3 7.4 1.0
S4 C:SF4101 2.3 11.2 1.0
S1 C:SF4101 2.3 13.4 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE3 C:SF4101 2.7 14.4 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS48 2.9 22.6 1.0
CB C:CYS48 3.8 13.0 1.0
S2 C:SF4101 3.9 16.9 1.0
N C:GLY50 4.0 9.3 1.0
CA C:CYS48 4.0 9.4 1.0
N C:VAL49 4.2 10.1 1.0
CA C:GLY50 4.5 6.5 1.0
C C:CYS48 4.6 11.4 1.0
CG2 C:VAL67 4.7 7.3 1.0
CG2 C:VAL5 4.7 4.8 1.0
CG1 C:VAL67 4.9 3.6 1.0
CG2 C:VAL25 4.9 9.8 1.0

Iron binding site 7 out of 12 in 8j7b

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Iron binding site 7 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:14.4
occ:1.00
 FE3 C:SF4101 0.0 14.4 1.0
S4 C:SF4101 2.3 11.2 1.0
S1 C:SF4101 2.3 13.4 1.0
S2 C:SF4101 2.3 16.9 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS51 3.0 12.9 1.0
N C:LYS52 3.5 4.8 1.0
N C:CYS51 3.6 2.8 1.0
S3 C:SF4101 3.9 7.4 1.0
N C:ARG53 4.1 8.5 1.0
N C:GLY50 4.1 9.3 1.0
CA C:CYS51 4.2 9.4 1.0
CB C:CYS51 4.2 10.6 1.0
C C:CYS51 4.2 11.0 1.0
CD C:PRO22 4.2 10.8 1.0
CA C:LYS52 4.3 2.6 1.0
C C:GLY50 4.3 5.1 1.0
CG2 C:VAL49 4.4 9.7 1.0
CG C:PRO22 4.4 9.1 1.0
CA C:GLY50 4.5 6.5 1.0
C C:LYS52 4.7 5.1 1.0
CB C:ARG53 5.0 5.7 1.0

Iron binding site 8 out of 12 in 8j7b

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Iron binding site 8 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:17.8
occ:1.00
 FE4 C:SF4101 0.0 17.8 1.0
S1 C:SF4101 2.3 13.4 1.0
S2 C:SF4101 2.3 16.9 1.0
S3 C:SF4101 2.3 7.4 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE3 C:SF4101 2.7 14.4 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS21 2.9 12.0 1.0
CD C:PRO22 3.8 10.8 1.0
S4 C:SF4101 3.9 11.2 1.0
CB C:CYS21 4.1 8.8 1.0
CA C:CYS21 4.2 5.8 1.0
CB C:VAL25 4.4 8.6 1.0
CG2 C:VAL25 4.5 9.8 1.0
OG1 C:THR23 4.6 19.2 1.0
CG C:PRO22 4.6 9.1 1.0
N C:PRO22 4.7 8.4 1.0
C C:CYS21 4.9 11.9 1.0
CG1 C:VAL25 4.9 10.5 1.0

Iron binding site 9 out of 12 in 8j7b

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Iron binding site 9 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:27.7
occ:1.00
 FE1 C:SF4102 0.0 27.7 1.0
S3 C:SF4102 2.3 15.1 1.0
S2 C:SF4102 2.3 20.7 1.0
S4 C:SF4102 2.3 22.8 1.0
FE4 C:SF4102 2.7 26.5 1.0
FE2 C:SF4102 2.7 25.6 1.0
FE3 C:SF4102 2.7 31.9 1.0
SG C:CYS58 3.0 26.4 1.0
CB C:CYS58 3.6 12.4 1.0
CA C:CYS58 3.7 9.6 1.0
S1 C:SF4102 3.9 17.5 1.0
CD C:PRO59 4.0 10.1 1.0
CG1 C:VAL65 4.3 0.2 1.0
CB C:SER64 4.5 10.3 1.0
N C:CYS58 4.6 13.1 1.0
C C:CYS58 4.7 12.3 1.0
N C:PRO59 4.7 7.7 1.0
CB C:CYS17 4.9 6.4 1.0
OG C:SER64 4.9 13.4 1.0
O C:ALA57 5.0 15.9 1.0

Iron binding site 10 out of 12 in 8j7b

Go back to Iron Binding Sites List in 8j7b
Iron binding site 10 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:25.6
occ:1.00
 FE2 C:SF4102 0.0 25.6 1.0
S1 C:SF4102 2.3 17.5 1.0
S4 C:SF4102 2.3 22.8 1.0
S3 C:SF4102 2.3 15.1 1.0
FE1 C:SF4102 2.7 27.7 1.0
FE3 C:SF4102 2.7 31.9 1.0
FE4 C:SF4102 2.7 26.5 1.0
SG C:CYS17 3.0 17.4 1.0
CB C:CYS17 3.4 6.4 1.0
N C:CYS17 3.8 8.1 1.0
S2 C:SF4102 3.9 20.7 1.0
CA C:CYS17 4.2 4.7 1.0
CE C:MET28 4.4 11.1 1.0
N C:GLN16 4.4 10.5 1.0
CB C:ALA40 4.6 6.7 1.0
N C:THR15 4.8 12.8 1.0
C C:GLN16 4.8 7.5 1.0
SG C:CYS14 5.0 15.5 1.0

Reference:

S.J.B.Chen, J.H.Wu, S.F.Sui, L.X.Zhang. Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Thu Aug 7 18:31:01 2025

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