Iron in PDB 8oie: Iron Nitrogenase Complex From Rhodobacter Capsulatus

All present enzymatic activity of Iron Nitrogenase Complex From Rhodobacter Capsulatus:
1.18.6.1;

The structure of Iron Nitrogenase Complex From Rhodobacter Capsulatus also contains other interesting chemical elements:

Aluminium	(Al)	4 atoms
Fluorine	(F)	12 atoms
Magnesium	(Mg)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Iron atom in the Iron Nitrogenase Complex From Rhodobacter Capsulatus (pdb code 8oie). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the Iron Nitrogenase Complex From Rhodobacter Capsulatus, PDB code: 8oie:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:89.2 occ:1.00 FE8 A:S5Q601 0.0 89.2 1.0 O7 A:HCA602 2.2 69.6 1.0 O6 A:HCA602 2.2 67.1 1.0 S3B A:S5Q601 2.3 66.0 1.0 S4B A:S5Q601 2.3 70.2 1.0 S1B A:S5Q601 2.3 66.4 1.0 FE6 A:S5Q601 2.6 79.2 1.0 FE7 A:S5Q601 2.6 81.8 1.0 FE5 A:S5Q601 2.7 81.5 1.0 ND1 A:HIS423 2.7 52.8 1.0 C7 A:HCA602 3.1 65.4 1.0 C3 A:HCA602 3.2 62.9 1.0 CX A:S5Q601 3.4 74.8 1.0 CE1 A:HIS423 3.6 54.1 1.0 CG A:HIS423 3.7 52.4 1.0 CB A:HIS423 3.8 51.7 1.0 C2 A:HCA602 4.0 61.6 1.0 O5 A:HCA602 4.3 66.1 1.0 O2 A:HCA602 4.3 64.7 1.0 C4 A:HCA602 4.4 58.0 1.0 O A:HOH756 4.4 46.9 1.0 CA A:HIS423 4.5 45.4 1.0 C5 A:HCA602 4.5 64.3 1.0 S2B A:S5Q601 4.6 61.6 1.0 C1 A:HCA602 4.7 65.0 1.0 S5A A:S5Q601 4.7 71.8 1.0 NE2 A:HIS423 4.8 51.0 1.0 CD2 A:HIS423 4.8 57.0 1.0 S3A A:S5Q601 4.8 66.3 1.0 FE2 A:S5Q601 4.9 79.7 1.0 FE3 A:S5Q601 5.0 76.6 1.0 FE4 A:S5Q601 5.0 80.0 1.0 NZ A:LYS83 5.0 54.9 1.0

Iron binding site 2 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:81.5 occ:1.00 FE5 A:S5Q601 0.0 81.5 1.0 CX A:S5Q601 2.0 74.8 1.0 S3A A:S5Q601 2.2 66.3 1.0 S1B A:S5Q601 2.3 66.4 1.0 S4B A:S5Q601 2.3 70.2 1.0 FE4 A:S5Q601 2.6 80.0 1.0 FE7 A:S5Q601 2.6 81.8 1.0 FE6 A:S5Q601 2.6 79.2 1.0 FE8 A:S5Q601 2.7 89.2 1.0 O6 A:HCA602 3.7 67.1 1.0 FE2 A:S5Q601 3.7 79.7 1.0 FE3 A:S5Q601 3.7 76.6 1.0 S3B A:S5Q601 3.8 66.0 1.0 O A:HOH756 4.0 46.9 1.0 NZ A:LYS83 4.0 54.9 1.0 S1A A:S5Q601 4.2 66.0 1.0 S4A A:S5Q601 4.3 68.5 1.0 S5A A:S5Q601 4.4 71.8 1.0 S2B A:S5Q601 4.5 61.6 1.0 NZ A:LYS339 4.6 62.2 1.0 O A:HOH717 4.6 61.6 1.0 O7 A:HCA602 4.7 69.6 1.0 C7 A:HCA602 4.7 65.4 1.0 CG1 A:VAL57 4.9 48.8 1.0 FE1 A:S5Q601 5.0 93.0 1.0

Iron binding site 3 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:81.8 occ:1.00 FE7 A:S5Q601 0.0 81.8 1.0 CX A:S5Q601 2.0 74.8 1.0 S5A A:S5Q601 2.2 71.8 1.0 S4B A:S5Q601 2.2 70.2 1.0 S3B A:S5Q601 2.2 66.0 1.0 FE6 A:S5Q601 2.6 79.2 1.0 FE3 A:S5Q601 2.6 76.6 1.0 FE8 A:S5Q601 2.6 89.2 1.0 FE5 A:S5Q601 2.6 81.5 1.0 FE2 A:S5Q601 3.7 79.7 1.0 FE4 A:S5Q601 3.7 80.0 1.0 S1B A:S5Q601 3.8 66.4 1.0 CZ A:PHE362 3.8 66.7 1.0 O7 A:HCA602 4.0 69.6 1.0 CE2 A:PHE362 4.0 70.5 1.0 NE2 A:GLN176 4.2 70.8 1.0 S2A A:S5Q601 4.3 68.2 1.0 S4A A:S5Q601 4.3 68.5 1.0 S2B A:S5Q601 4.4 61.6 1.0 CG1 A:VAL57 4.4 48.8 1.0 O6 A:HCA602 4.5 67.1 1.0 S3A A:S5Q601 4.5 66.3 1.0 CG2 A:VAL57 4.6 51.4 1.0 O2 A:HCA602 4.6 64.7 1.0 CE1 A:PHE362 5.0 69.2 1.0 C3 A:HCA602 5.0 62.9 1.0 FE1 A:S5Q601 5.0 93.0 1.0 ND1 A:HIS423 5.0 52.8 1.0

Iron binding site 4 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:79.2 occ:1.00 FE6 A:S5Q601 0.0 79.2 1.0 CX A:S5Q601 2.0 74.8 1.0 S2B A:S5Q601 2.2 61.6 1.0 S3B A:S5Q601 2.2 66.0 1.0 S1B A:S5Q601 2.2 66.4 1.0 FE2 A:S5Q601 2.5 79.7 1.0 FE8 A:S5Q601 2.6 89.2 1.0 FE7 A:S5Q601 2.6 81.8 1.0 FE5 A:S5Q601 2.6 81.5 1.0 FE3 A:S5Q601 3.7 76.6 1.0 FE4 A:S5Q601 3.7 80.0 1.0 S4B A:S5Q601 3.8 70.2 1.0 ND1 A:HIS423 4.0 52.8 1.0 N A:GLY337 4.2 66.5 1.0 S2A A:S5Q601 4.2 68.2 1.0 N A:GLY336 4.2 67.9 1.0 S1A A:S5Q601 4.2 66.0 1.0 CE1 A:HIS423 4.5 54.1 1.0 S5A A:S5Q601 4.5 71.8 1.0 O6 A:HCA602 4.5 67.1 1.0 S3A A:S5Q601 4.6 66.3 1.0 CA A:GLY336 4.6 65.8 1.0 O7 A:HCA602 4.6 69.6 1.0 CD A:LYS339 4.6 52.4 1.0 CZ A:PHE362 4.6 66.7 1.0 CE A:LYS339 4.8 56.5 1.0 NZ A:LYS339 4.8 62.2 1.0 CG A:HIS423 4.8 52.4 1.0 C A:GLY336 4.9 67.8 1.0 FE1 A:S5Q601 4.9 93.0 1.0

Iron binding site 5 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:80.0 occ:1.00 FE4 A:S5Q601 0.0 80.0 1.0 CX A:S5Q601 2.0 74.8 1.0 S3A A:S5Q601 2.2 66.3 1.0 S1A A:S5Q601 2.3 66.0 1.0 S4A A:S5Q601 2.3 68.5 1.0 FE5 A:S5Q601 2.6 81.5 1.0 FE1 A:S5Q601 2.6 93.0 1.0 FE3 A:S5Q601 2.6 76.6 1.0 FE2 A:S5Q601 2.7 79.7 1.0 FE7 A:S5Q601 3.7 81.8 1.0 FE6 A:S5Q601 3.7 79.2 1.0 S2A A:S5Q601 3.8 68.2 1.0 CD2 A:TYR211 4.2 47.4 1.0 S1B A:S5Q601 4.2 66.4 1.0 O A:HOH786 4.3 41.8 1.0 S4B A:S5Q601 4.3 70.2 1.0 S5A A:S5Q601 4.4 71.8 1.0 CE2 A:TYR211 4.5 45.7 1.0 S2B A:S5Q601 4.5 61.6 1.0 CG1 A:VAL57 4.7 48.8 1.0 SG A:CYS257 4.7 61.2 1.0 O A:HOH717 4.9 61.6 1.0 FE8 A:S5Q601 5.0 89.2 1.0

Iron binding site 6 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:93.0 occ:1.00 FE1 A:S5Q601 0.0 93.0 1.0 SG A:CYS257 2.3 61.2 1.0 S2A A:S5Q601 2.3 68.2 1.0 S4A A:S5Q601 2.3 68.5 1.0 S1A A:S5Q601 2.3 66.0 1.0 FE2 A:S5Q601 2.6 79.7 1.0 FE4 A:S5Q601 2.6 80.0 1.0 FE3 A:S5Q601 2.7 76.6 1.0 CX A:S5Q601 3.4 74.8 1.0 CB A:CYS257 3.5 59.9 1.0 OG A:SER338 4.1 70.5 1.0 CB A:SER260 4.2 51.9 1.0 OG A:SER260 4.2 62.5 1.0 CB A:SER338 4.3 66.0 1.0 N A:SER338 4.5 66.7 1.0 CE2 A:TYR211 4.7 45.7 1.0 S2B A:S5Q601 4.8 61.6 1.0 CA A:CYS257 4.8 58.2 1.0 CB A:ARG259 4.8 65.5 1.0 N A:SER260 4.8 62.4 1.0 S3A A:S5Q601 4.8 66.3 1.0 S5A A:S5Q601 4.8 71.8 1.0 FE6 A:S5Q601 4.9 79.2 1.0 FE5 A:S5Q601 5.0 81.5 1.0 FE7 A:S5Q601 5.0 81.8 1.0

Iron binding site 7 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:76.6 occ:1.00 FE3 A:S5Q601 0.0 76.6 1.0 CX A:S5Q601 2.0 74.8 1.0 S5A A:S5Q601 2.2 71.8 1.0 S4A A:S5Q601 2.2 68.5 1.0 S2A A:S5Q601 2.3 68.2 1.0 FE7 A:S5Q601 2.6 81.8 1.0 FE4 A:S5Q601 2.6 80.0 1.0 FE1 A:S5Q601 2.7 93.0 1.0 FE2 A:S5Q601 2.7 79.7 1.0 FE6 A:S5Q601 3.7 79.2 1.0 FE5 A:S5Q601 3.7 81.5 1.0 CZ A:PHE362 3.7 66.7 1.0 S1A A:S5Q601 3.9 66.0 1.0 NE2 A:HIS180 4.1 60.6 1.0 CG1 A:VAL57 4.2 48.8 1.0 S3B A:S5Q601 4.2 66.0 1.0 CE1 A:PHE362 4.2 69.2 1.0 S4B A:S5Q601 4.3 70.2 1.0 S2B A:S5Q601 4.5 61.6 1.0 CE1 A:HIS180 4.5 64.0 1.0 S3A A:S5Q601 4.5 66.3 1.0 SG A:CYS257 4.7 61.2 1.0 CE2 A:PHE362 4.7 70.5 1.0 CB A:SER260 4.8 51.9 1.0 FE8 A:S5Q601 5.0 89.2 1.0

Iron binding site 8 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:79.7 occ:1.00 FE2 A:S5Q601 0.0 79.7 1.0 CX A:S5Q601 2.0 74.8 1.0 S2B A:S5Q601 2.2 61.6 1.0 S2A A:S5Q601 2.2 68.2 1.0 S1A A:S5Q601 2.3 66.0 1.0 FE6 A:S5Q601 2.5 79.2 1.0 FE1 A:S5Q601 2.6 93.0 1.0 FE4 A:S5Q601 2.7 80.0 1.0 FE3 A:S5Q601 2.7 76.6 1.0 FE7 A:S5Q601 3.7 81.8 1.0 FE5 A:S5Q601 3.7 81.5 1.0 N A:SER338 3.8 66.7 1.0 S4A A:S5Q601 3.9 68.5 1.0 N A:GLY337 4.1 66.5 1.0 S1B A:S5Q601 4.2 66.4 1.0 CA A:GLY337 4.2 66.5 1.0 S3B A:S5Q601 4.2 66.0 1.0 C A:GLY337 4.3 68.9 1.0 S5A A:S5Q601 4.5 71.8 1.0 S3A A:S5Q601 4.5 66.3 1.0 N A:LYS339 4.5 64.5 1.0 CB A:SER338 4.6 66.0 1.0 CZ A:PHE362 4.6 66.7 1.0 SG A:CYS257 4.6 61.2 1.0 CA A:SER338 4.7 66.5 1.0 CE A:LYS339 4.7 56.5 1.0 CD A:LYS339 4.7 52.4 1.0 CG A:LYS339 4.8 56.9 1.0 FE8 A:S5Q601 4.9 89.2 1.0 OG A:SER338 5.0 70.5 1.0

Iron binding site 9 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:93.6 occ:1.00 FE1 A:CLF603 0.0 93.6 1.0 S3A A:CLF603 2.3 54.4 1.0 SG C:CYS104 2.3 53.3 1.0 S2A A:CLF603 2.3 69.8 1.0 S1 A:CLF603 2.4 67.5 1.0 FE2 A:CLF603 2.5 84.3 1.0 FE4 A:CLF603 2.5 87.0 1.0 FE3 A:CLF603 2.8 79.5 1.0 OG C:SER143 3.4 56.5 1.0 CB C:CYS104 3.5 52.5 1.0 O A:HOH762 3.7 54.1 1.0 S4A A:CLF603 3.8 58.3 1.0 CB C:SER143 3.9 46.7 1.0 N C:CYS104 4.1 54.1 1.0 SG A:CYS75 4.2 61.6 1.0 SG C:CYS45 4.2 53.9 1.0 FE8 A:CLF603 4.4 86.3 1.0 CA C:CYS104 4.4 49.5 1.0 FE5 A:CLF603 4.5 87.0 1.0 O C:HOH571 4.7 49.1 1.0 FE6 A:CLF603 4.8 85.0 1.0 SG C:CYS20 4.9 49.5 1.0 CB C:THR103 4.9 50.1 1.0 OG1 A:THR139 5.0 60.7 1.0

Iron binding site 10 out of 40 in the Iron Nitrogenase Complex From Rhodobacter Capsulatus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Iron Nitrogenase Complex From Rhodobacter Capsulatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe603 b:84.3 occ:1.00 FE2 A:CLF603 0.0 84.3 1.0 SG A:CYS75 2.3 61.6 1.0 S4A A:CLF603 2.3 58.3 1.0 S2A A:CLF603 2.3 69.8 1.0 S1 A:CLF603 2.5 67.5 1.0 FE1 A:CLF603 2.5 93.6 1.0 FE4 A:CLF603 2.6 87.0 1.0 FE3 A:CLF603 2.7 79.5 1.0 FE8 A:CLF603 2.8 86.3 1.0 N A:CYS75 3.4 50.9 1.0 CB A:CYS75 3.5 47.4 1.0 CA A:CYS75 3.6 48.5 1.0 FE5 A:CLF603 3.7 87.0 1.0 S3A A:CLF603 3.8 54.4 1.0 S4B A:CLF603 3.9 58.0 1.0 C A:GLY74 4.1 40.1 1.0 O A:HOH762 4.1 54.1 1.0 SG C:CYS104 4.5 53.3 1.0 SG C:CYS45 4.5 53.9 1.0 FE6 A:CLF603 4.6 85.0 1.0 CA A:GLY74 4.6 35.2 1.0 O A:GLY74 4.6 55.1 1.0 SG C:CYS20 4.8 49.5 1.0

F.V.Schmidt, L.Schulz, J.Zarzycki, S.Prinz, N.N.Oehlmann, T.J.Erb, J.G.Rebelein. Structural Insights Into the Iron Nitrogenase Complex Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01124-2