Atomistry » Iron » PDB 8k6y-8p02 » 8olp
Atomistry »
  Iron »
    PDB 8k6y-8p02 »
      8olp »

Iron in PDB 8olp: Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans

Protein crystallography data

The structure of Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8olp was solved by M.Lucic, J.A.R.Worrall, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 70.42 / 1.27
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 71.037, 68.127, 73.046, 90, 105.42, 90
R / Rfree (%) 15.2 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans (pdb code 8olp). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8olp:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8olp

Go back to Iron Binding Sites List in 8olp
Iron binding site 1 out of 2 in the Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:12.9
occ:1.00
FE A:HEM501 0.0 12.9 1.0
ND A:HEM501 2.0 12.3 1.0
NA A:HEM501 2.0 13.4 1.0
NB A:HEM501 2.1 11.8 1.0
NE2 A:HIS326 2.1 11.3 1.0
NC A:HEM501 2.1 11.9 1.0
O A:HOH700 2.1 14.8 1.0
C1D A:HEM501 3.0 13.0 1.0
C1A A:HEM501 3.0 14.5 1.0
C4D A:HEM501 3.0 13.5 1.0
C1B A:HEM501 3.0 12.4 1.0
C4A A:HEM501 3.0 11.7 1.0
CE1 A:HIS326 3.0 13.3 1.0
C4B A:HEM501 3.1 11.8 1.0
C4C A:HEM501 3.1 13.3 1.0
C1C A:HEM501 3.1 13.0 1.0
CD2 A:HIS326 3.1 11.5 1.0
CHB A:HEM501 3.4 12.4 1.0
CHA A:HEM501 3.4 12.2 1.0
CHD A:HEM501 3.4 12.9 1.0
CHC A:HEM501 3.5 11.7 1.0
NH1 A:ARG342 4.1 12.7 1.0
ND1 A:HIS326 4.2 13.5 1.0
O A:HOH664 4.2 15.1 1.0
CG A:HIS326 4.2 14.6 1.0
C3A A:HEM501 4.2 12.8 1.0
C2D A:HEM501 4.2 13.2 1.0
C2A A:HEM501 4.3 12.8 1.0
C3D A:HEM501 4.3 12.6 1.0
C2B A:HEM501 4.3 12.2 1.0
C3B A:HEM501 4.3 12.5 1.0
C3C A:HEM501 4.3 12.4 1.0
C2C A:HEM501 4.3 12.3 1.0
OD1 A:ASP239 4.5 14.5 1.0
CD A:ARG342 4.8 11.5 1.0
CZ A:ARG342 4.9 13.1 1.0

Iron binding site 2 out of 2 in 8olp

Go back to Iron Binding Sites List in 8olp
Iron binding site 2 out of 2 in the Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Y345F/F347Y Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:13.6
occ:1.00
FE B:HEM501 0.0 13.6 1.0
ND B:HEM501 2.0 12.6 1.0
NB B:HEM501 2.0 12.7 1.0
NA B:HEM501 2.1 13.9 1.0
NC B:HEM501 2.1 13.8 1.0
NE2 B:HIS326 2.1 13.3 1.0
O B:HOH712 2.3 20.3 1.0
C1D B:HEM501 3.0 12.8 1.0
C4D B:HEM501 3.0 14.0 1.0
C1B B:HEM501 3.0 14.1 1.0
C4A B:HEM501 3.0 12.6 1.0
CE1 B:HIS326 3.0 14.3 1.0
C4B B:HEM501 3.0 13.7 1.0
C1A B:HEM501 3.1 13.4 1.0
C4C B:HEM501 3.1 13.1 1.0
C1C B:HEM501 3.1 14.0 1.0
CD2 B:HIS326 3.1 13.3 1.0
CHB B:HEM501 3.4 12.7 1.0
CHA B:HEM501 3.4 14.0 1.0
CHD B:HEM501 3.4 13.3 1.0
CHC B:HEM501 3.4 13.8 1.0
NH1 B:ARG342 4.1 13.8 1.0
ND1 B:HIS326 4.2 14.0 1.0
O B:HOH636 4.2 21.3 1.0
C2D B:HEM501 4.2 12.7 1.0
CG B:HIS326 4.2 14.1 1.0
C3A B:HEM501 4.3 12.7 1.0
C2B B:HEM501 4.3 13.2 1.0
C3C B:HEM501 4.3 14.1 1.0
C3D B:HEM501 4.3 14.1 1.0
C2A B:HEM501 4.3 13.0 1.0
C2C B:HEM501 4.3 14.2 1.0
C3B B:HEM501 4.3 13.1 1.0
OD1 B:ASP239 4.6 16.7 1.0
CD B:ARG342 4.8 14.0 1.0
CZ B:ARG342 4.9 13.1 1.0

Reference:

M.Lucic, J.A.R.Worrall, M.A.Hough. Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans To Be Published.
Page generated: Thu Aug 7 19:03:31 2025

Last articles

Zn in 8P39
Zn in 8P30
Zn in 8P2Y
Zn in 8P2X
Zn in 8P2S
Zn in 8P0I
Zn in 8P23
Zn in 8OXQ
Zn in 8OXP
Zn in 8OWO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy