Iron in PDB 8ptx: Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine

The structure of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine also contains other interesting chemical elements:

Magnesium

(Mg)

4 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine (pdb code 8ptx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine, PDB code: 8ptx:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:177.5 occ:1.00 FE1 C:SF4601 0.0 177.5 1.0 SG C:CYS99 2.3 147.5 1.0 S2 C:SF4601 2.3 168.6 1.0 S3 C:SF4601 2.3 169.3 1.0 S4 C:SF4601 2.3 166.8 1.0 FE4 C:SF4601 2.7 178.7 1.0 FE2 C:SF4601 2.7 163.7 1.0 FE3 C:SF4601 2.7 183.5 1.0 CB C:CYS99 3.6 141.6 1.0 S1 C:SF4601 3.9 172.6 1.0 N C:MET604 4.1 132.7 1.0 CG C:GLN125 4.2 127.1 1.0 CE1 C:HIS101 4.5 136.8 1.0 SG C:CYS112 4.7 140.3 1.0 SG C:CYS109 4.8 143.3 1.0 CA C:CYS99 4.9 140.5 1.0 CD C:GLN125 4.9 131.2 1.0 O C:MET604 5.0 143.5 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:163.7 occ:1.00 FE2 C:SF4601 0.0 163.7 1.0 S3 C:SF4601 2.3 169.3 1.0 S1 C:SF4601 2.3 172.6 1.0 S4 C:SF4601 2.3 166.8 1.0 FE4 C:SF4601 2.7 178.7 1.0 FE3 C:SF4601 2.7 183.5 1.0 FE1 C:SF4601 2.7 177.5 1.0 N C:MET604 2.8 132.7 1.0 O C:MET604 2.8 143.5 1.0 SD C:MET604 3.2 151.3 1.0 C C:MET604 3.6 141.1 1.0 CA C:MET604 3.7 133.3 1.0 S2 C:SF4601 3.9 168.6 1.0 CG C:MET604 4.2 142.6 1.0 NH1 C:ARG260 4.3 118.6 1.0 CB C:MET604 4.5 139.2 1.0 CE C:MET604 4.6 140.4 1.0 OXT C:MET604 4.8 146.6 1.0 O3' C:5AD602 4.8 111.6 1.0 SG C:CYS109 4.8 143.3 1.0 SG C:CYS99 4.8 147.5 1.0 SG C:CYS112 4.8 140.3 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:183.5 occ:1.00 FE3 C:SF4601 0.0 183.5 1.0 SG C:CYS109 2.3 143.3 1.0 S2 C:SF4601 2.3 168.6 1.0 S1 C:SF4601 2.3 172.6 1.0 S4 C:SF4601 2.3 166.8 1.0 FE4 C:SF4601 2.7 178.7 1.0 FE2 C:SF4601 2.7 163.7 1.0 FE1 C:SF4601 2.7 177.5 1.0 CB C:CYS109 3.4 138.0 1.0 NH1 C:ARG260 3.7 118.6 1.0 S3 C:SF4601 3.9 169.3 1.0 CE1 C:HIS101 4.2 136.8 1.0 N C:CYS109 4.4 140.3 1.0 O C:MET604 4.5 143.5 1.0 CA C:CYS109 4.5 138.2 1.0 CB C:CYS112 4.6 124.1 1.0 SG C:CYS112 4.7 140.3 1.0 NE2 C:HIS101 4.7 134.3 1.0 SG C:CYS99 4.8 147.5 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:178.7 occ:1.00 FE4 C:SF4601 0.0 178.7 1.0 SG C:CYS112 2.3 140.3 1.0 S1 C:SF4601 2.3 172.6 1.0 S3 C:SF4601 2.3 169.3 1.0 S2 C:SF4601 2.3 168.6 1.0 FE2 C:SF4601 2.7 163.7 1.0 FE3 C:SF4601 2.7 183.5 1.0 FE1 C:SF4601 2.7 177.5 1.0 CB C:CYS112 3.0 124.1 1.0 S4 C:SF4601 3.9 166.8 1.0 CG C:GLN125 4.1 127.1 1.0 CB C:SER126 4.3 127.9 1.0 NE2 C:GLN125 4.4 132.0 1.0 CA C:CYS112 4.4 122.0 1.0 SG C:CYS109 4.6 143.3 1.0 SG C:CYS99 4.7 147.5 1.0 CD C:GLN125 4.8 131.2 1.0 SD C:MET604 4.9 151.3 1.0 CB C:CYS109 4.9 138.0 1.0 N C:SER126 5.0 132.4 1.0 CA C:SER126 5.0 132.0 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine To Be Published.