Atomistry » Iron » PDB 8py6-8qbq » 8q0m
Atomistry »
  Iron »
    PDB 8py6-8qbq »
      8q0m »

Iron in PDB 8q0m: Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.

Enzymatic activity of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.

All present enzymatic activity of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.:
1.6.5.3; 1.6.99.3; 7.1.1.2;

Other elements in 8q0m:

The structure of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 2 atoms
Potassium (K) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. (pdb code 8q0m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm., PDB code: 8q0m:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 1 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:25.4
occ:1.00
 FE1 B:SF4201 0.0 25.4 1.0
SG B:CYS119 2.2 20.4 1.0
S3 B:SF4201 2.3 25.4 1.0
S2 B:SF4201 2.3 25.4 1.0
S4 B:SF4201 2.3 25.4 1.0
FE4 B:SF4201 2.7 25.4 1.0
FE3 B:SF4201 2.7 25.4 1.0
FE2 B:SF4201 2.7 25.4 1.0
CB B:CYS119 3.2 20.4 1.0
S1 B:SF4201 3.9 25.4 1.0
N B:CYS119 3.9 20.4 1.0
OG1 B:THR91 4.0 24.3 1.0
CA B:CYS119 4.2 20.4 1.0
SG B:CYS149 4.3 21.3 1.0
CE2 B:TYR126 4.8 21.0 1.0
SG B:CYS54 4.8 26.1 1.0
CQ2 D:2MR85 4.8 24.3 1.0
N B:THR91 4.9 24.3 1.0
SG B:CYS55 4.9 26.0 1.0

Iron binding site 2 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 2 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:25.4
occ:1.00
 FE2 B:SF4201 0.0 25.4 1.0
SG B:CYS149 2.3 21.3 1.0
S1 B:SF4201 2.3 25.4 1.0
S3 B:SF4201 2.3 25.4 1.0
S4 B:SF4201 2.3 25.4 1.0
FE4 B:SF4201 2.7 25.4 1.0
FE1 B:SF4201 2.7 25.4 1.0
FE3 B:SF4201 2.7 25.4 1.0
CA B:CYS149 3.3 21.3 1.0
CB B:CYS149 3.3 21.3 1.0
C B:CYS149 3.6 21.3 1.0
S2 B:SF4201 3.9 25.4 1.0
N B:PRO150 3.9 24.4 1.0
O B:CYS149 4.2 21.3 1.0
CA B:PRO150 4.3 24.4 1.0
SG B:CYS55 4.4 26.0 1.0
NE D:ARG105 4.5 22.2 1.0
CD2 D:HIS190 4.6 24.7 1.0
N B:CYS149 4.6 21.3 1.0
CD B:PRO150 4.6 24.4 1.0
O B:GLY148 4.7 21.2 1.0
NE2 D:HIS190 4.7 24.7 1.0
SG B:CYS119 4.7 20.4 1.0
NH2 D:ARG105 4.7 22.2 1.0
SG B:CYS54 4.8 26.1 1.0
CB B:PRO150 4.8 24.4 1.0

Iron binding site 3 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 3 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:25.4
occ:1.00
 FE3 B:SF4201 0.0 25.4 1.0
SG B:CYS54 2.3 26.1 1.0
S1 B:SF4201 2.3 25.4 1.0
S4 B:SF4201 2.3 25.4 1.0
S2 B:SF4201 2.3 25.4 1.0
FE4 B:SF4201 2.7 25.4 1.0
FE1 B:SF4201 2.7 25.4 1.0
FE2 B:SF4201 2.7 25.4 1.0
CB B:CYS54 3.2 26.1 1.0
S3 B:SF4201 3.9 25.4 1.0
CQ2 D:2MR85 3.9 24.3 1.0
N B:CYS54 4.0 26.1 1.0
CA B:CYS54 4.1 26.1 1.0
N B:CYS55 4.1 26.0 1.0
NE2 D:HIS190 4.1 24.7 1.0
C B:CYS54 4.4 26.1 1.0
SG B:CYS149 4.7 21.3 1.0
CG D:ARG105 4.8 22.2 1.0
SG B:CYS55 4.8 26.0 1.0
SG B:CYS119 4.8 20.4 1.0
CB B:ALA53 4.8 26.9 1.0
CD2 D:HIS190 4.8 24.7 1.0
NE D:ARG105 4.9 22.2 1.0
C B:ALA53 4.9 26.9 1.0
NH2 D:2MR85 5.0 24.3 1.0

Iron binding site 4 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 4 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:25.4
occ:1.00
 FE4 B:SF4201 0.0 25.4 1.0
SG B:CYS55 2.3 26.0 1.0
S3 B:SF4201 2.3 25.4 1.0
S2 B:SF4201 2.3 25.4 1.0
S1 B:SF4201 2.3 25.4 1.0
FE2 B:SF4201 2.7 25.4 1.0
FE3 B:SF4201 2.7 25.4 1.0
FE1 B:SF4201 2.7 25.4 1.0
CB B:CYS55 3.3 26.0 1.0
N B:CYS55 3.6 26.0 1.0
CA B:CYS55 3.9 26.0 1.0
S4 B:SF4201 3.9 25.4 1.0
CA B:GLY90 4.6 25.1 1.0
C B:CYS54 4.6 26.1 1.0
CA B:GLY117 4.6 21.6 1.0
SG B:CYS54 4.6 26.1 1.0
CA B:PRO150 4.7 24.4 1.0
CB B:PRO150 4.7 24.4 1.0
SG B:CYS119 4.7 20.4 1.0
CB B:CYS54 4.8 26.1 1.0
SG B:CYS149 4.9 21.3 1.0
CB B:CYS119 4.9 20.4 1.0
N B:GLY90 4.9 25.1 1.0
N B:CYS54 5.0 26.1 1.0

Iron binding site 5 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 5 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:65.2
occ:1.00
 FE1 E:FES301 0.0 65.2 1.0
S2 E:FES301 2.2 65.2 1.0
S1 E:FES301 2.2 65.2 1.0
SG E:CYS108 2.3 58.5 1.0
SG E:CYS103 2.3 59.9 1.0
FE2 E:FES301 2.7 65.2 1.0
CB E:CYS103 3.3 59.9 1.0
CB E:CYS108 3.3 58.5 1.0
CA E:CYS144 4.1 57.0 1.0
N E:CYS108 4.2 58.5 1.0
CA E:CYS108 4.3 58.5 1.0
N E:LEU145 4.4 60.0 1.0
SG E:CYS144 4.6 57.0 1.0
CA E:CYS103 4.6 59.9 1.0
CB E:CYS144 4.7 57.0 1.0
CA E:CYS148 4.7 62.8 1.0
CB E:THR105 4.7 55.1 1.0
SG E:CYS148 4.7 62.8 1.0
C E:CYS103 4.8 59.9 1.0
N E:THR105 4.8 55.1 1.0
O E:THR105 4.8 55.1 1.0
C E:CYS144 4.9 57.0 1.0
N E:CYS144 4.9 57.0 1.0
CB E:CYS148 5.0 62.8 1.0

Iron binding site 6 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 6 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe301

b:65.2
occ:1.00
 FE2 E:FES301 0.0 65.2 1.0
S2 E:FES301 2.2 65.2 1.0
S1 E:FES301 2.2 65.2 1.0
SG E:CYS148 2.3 62.8 1.0
SG E:CYS144 2.3 57.0 1.0
FE1 E:FES301 2.7 65.2 1.0
CB E:CYS148 3.3 62.8 1.0
CB E:CYS144 3.3 57.0 1.0
CA E:CYS144 3.6 57.0 1.0
CA E:CYS148 3.6 62.8 1.0
N E:CYS148 3.7 62.8 1.0
N E:LEU145 4.0 60.0 1.0
N E:GLY146 4.1 61.2 1.0
C E:CYS144 4.2 57.0 1.0
N F:GLY103 4.3 58.7 1.0
SG E:CYS103 4.3 59.9 1.0
N E:ALA147 4.3 63.4 1.0
C E:ALA147 4.4 63.4 1.0
SG E:CYS108 4.5 58.5 1.0
CA E:GLY146 4.7 61.2 1.0
C E:GLY146 4.8 61.2 1.0
N E:CYS144 4.8 57.0 1.0
CA F:PRO102 4.9 54.2 1.0
CB E:PRO107 4.9 56.7 1.0
C E:LEU145 5.0 60.0 1.0

Iron binding site 7 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 7 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:38.4
occ:1.00
 FE1 F:SF4502 0.0 38.4 1.0
SG F:CYS359 2.3 39.6 1.0
S3 F:SF4502 2.3 38.4 1.0
S4 F:SF4502 2.3 38.4 1.0
S2 F:SF4502 2.3 38.4 1.0
FE2 F:SF4502 2.7 38.4 1.0
FE3 F:SF4502 2.7 38.4 1.0
FE4 F:SF4502 2.7 38.4 1.0
CB F:CYS359 3.3 39.6 1.0
N F:GLN361 3.7 35.5 1.0
CB F:GLN361 3.8 35.5 1.0
N F:CYS359 3.8 39.6 1.0
S1 F:SF4502 3.9 38.4 1.0
N F:GLY360 3.9 37.0 1.0
CA F:CYS359 3.9 39.6 1.0
C F:CYS359 4.1 39.6 1.0
CA F:GLN361 4.3 35.5 1.0
CD F:PRO203 4.4 42.0 1.0
N F:CYS362 4.5 33.8 1.0
NE2 F:GLN361 4.5 35.5 1.0
C F:GLY360 4.7 37.0 1.0
OG F:SER358 4.7 39.6 1.0
CA F:GLY360 4.8 37.0 1.0
SG F:CYS365 4.8 36.1 1.0
SG F:CYS405 4.8 39.9 1.0
SG F:CYS362 4.9 33.8 1.0
O F:CYS359 4.9 39.6 1.0
CG F:PRO203 5.0 42.0 1.0
C F:GLN361 5.0 35.5 1.0

Iron binding site 8 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 8 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:38.4
occ:1.00
 FE2 F:SF4502 0.0 38.4 1.0
SG F:CYS365 2.2 36.1 1.0
S1 F:SF4502 2.3 38.4 1.0
S3 F:SF4502 2.3 38.4 1.0
S4 F:SF4502 2.3 38.4 1.0
FE4 F:SF4502 2.7 38.4 1.0
FE1 F:SF4502 2.7 38.4 1.0
FE3 F:SF4502 2.7 38.4 1.0
CB F:CYS365 3.0 36.1 1.0
OG F:SER358 3.4 39.6 1.0
S2 F:SF4502 3.9 38.4 1.0
CA F:CYS365 4.3 36.1 1.0
N F:CYS359 4.3 39.6 1.0
CB F:SER358 4.4 39.6 1.0
CD2 F:LEU407 4.4 43.2 1.0
SG F:CYS362 4.5 33.8 1.0
C F:CYS365 4.5 36.1 1.0
CA F:SER358 4.6 39.6 1.0
N F:GLY360 4.6 37.0 1.0
CB F:LEU407 4.7 43.2 1.0
SG F:CYS405 4.7 39.9 1.0
SG F:CYS359 4.8 39.6 1.0
N F:ARG366 4.8 34.5 1.0
O F:CYS365 4.9 36.1 1.0
C F:SER358 4.9 39.6 1.0
N F:GLY408 5.0 41.8 1.0
N F:CYS365 5.0 36.1 1.0

Iron binding site 9 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 9 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:38.4
occ:1.00
 FE3 F:SF4502 0.0 38.4 1.0
S1 F:SF4502 2.3 38.4 1.0
SG F:CYS405 2.3 39.9 1.0
S2 F:SF4502 2.3 38.4 1.0
S4 F:SF4502 2.3 38.4 1.0
FE1 F:SF4502 2.7 38.4 1.0
FE2 F:SF4502 2.7 38.4 1.0
FE4 F:SF4502 2.7 38.4 1.0
CB F:CYS405 3.3 39.9 1.0
S3 F:SF4502 3.9 38.4 1.0
N F:CYS405 4.0 39.9 1.0
CA F:CYS405 4.1 39.9 1.0
CB F:LEU407 4.2 43.2 1.0
CG F:PRO203 4.4 42.0 1.0
CD1 F:ILE185 4.4 45.4 1.0
C F:CYS405 4.4 39.9 1.0
O F:CYS405 4.6 39.9 1.0
N F:LEU407 4.6 43.2 1.0
CD F:PRO203 4.7 42.0 1.0
SG F:CYS365 4.8 36.1 1.0
SG F:CYS359 4.8 39.6 1.0
SG F:CYS362 4.8 33.8 1.0
N F:GLY408 4.9 41.8 1.0
CA F:LEU407 4.9 43.2 1.0

Iron binding site 10 out of 28 in 8q0m

Go back to Iron Binding Sites List in 8q0m
Iron binding site 10 out of 28 in the Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Outward-Facing, Closed Proteoliposome Complex I at 3.1 A. Initially Purified in Ddm. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe502

b:38.4
occ:1.00
 FE4 F:SF4502 0.0 38.4 1.0
S3 F:SF4502 2.3 38.4 1.0
S1 F:SF4502 2.3 38.4 1.0
S2 F:SF4502 2.3 38.4 1.0
SG F:CYS362 2.3 33.8 1.0
FE2 F:SF4502 2.7 38.4 1.0
FE1 F:SF4502 2.7 38.4 1.0
FE3 F:SF4502 2.7 38.4 1.0
CB F:CYS362 3.4 33.8 1.0
N F:CYS362 3.6 33.8 1.0
S4 F:SF4502 3.9 38.4 1.0
CA F:CYS362 4.0 33.8 1.0
O F:CYS362 4.2 33.8 1.0
N F:ILE404 4.3 36.0 1.0
CB F:CYS365 4.4 36.1 1.0
CB F:ILE404 4.4 36.0 1.0
C F:CYS362 4.5 33.8 1.0
CB F:GLN361 4.5 35.5 1.0
CB F:THR403 4.6 35.9 1.0
SG F:CYS365 4.6 36.1 1.0
C F:GLN361 4.7 35.5 1.0
N F:CYS405 4.7 39.9 1.0
N F:GLN361 4.7 35.5 1.0
SG F:CYS359 4.8 39.6 1.0
SG F:CYS405 4.8 39.9 1.0
CG1 F:ILE404 4.8 36.0 1.0
CA F:GLN361 4.9 35.5 1.0
CA F:ILE404 4.9 36.0 1.0
NE2 F:GLN361 4.9 35.5 1.0
CD1 F:ILE404 4.9 36.0 1.0
CG2 F:THR403 5.0 35.9 1.0

Reference:

D.N.Grba, J.J.Wright, W.Fisher, Z.Yin, J.Hirst. Molecular Mechanism of the Ischemia-Induced Regulatory Switch in Mammalian Complex I Science 2024.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ADO2075
Page generated: Thu Aug 7 20:18:12 2025

Last articles

Mg in 1W49
Mg in 1W46
Mg in 1W2Y
Mg in 1VQN
Mg in 1W25
Mg in 1W23
Mg in 1W1Z
Mg in 1W1W
Mg in 1W0N
Mg in 1W0K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy