Atomistry » Iron » PDB 8py5-8qbc » 8q6x
Atomistry »
  Iron »
    PDB 8py5-8qbc »
      8q6x »

Iron in PDB 8q6x: Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae, PDB code: 8q6x was solved by J.Freytag, J.M.Mueller, T.Stehle, G.Zocher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.02 / 1.91
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.166, 95.544, 81.459, 90, 109.22, 90
R / Rfree (%) 17 / 20.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae (pdb code 8q6x). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae, PDB code: 8q6x:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8q6x

Go back to Iron Binding Sites List in 8q6x
Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:26.6
occ:1.00
FE A:HEM501 0.0 26.6 1.0
NC A:HEM501 2.0 25.2 1.0
NA A:HEM501 2.0 24.3 1.0
ND A:HEM501 2.1 26.4 1.0
NB A:HEM501 2.1 24.9 1.0
SG A:CYS342 2.4 26.8 1.0
C4B A:HEM501 3.0 24.4 1.0
C1D A:HEM501 3.0 26.2 1.0
C4C A:HEM501 3.0 27.3 1.0
C4D A:HEM501 3.0 25.7 1.0
C1A A:HEM501 3.0 26.0 1.0
C1C A:HEM501 3.1 26.9 1.0
C1B A:HEM501 3.1 23.8 1.0
C4A A:HEM501 3.1 26.4 1.0
CHC A:HEM501 3.4 25.1 1.0
CB A:CYS342 3.4 23.7 1.0
CHD A:HEM501 3.4 27.6 1.0
CHA A:HEM501 3.4 25.5 1.0
CHB A:HEM501 3.5 27.1 1.0
CA A:CYS342 4.2 27.2 1.0
C3C A:HEM501 4.2 26.1 1.0
C2C A:HEM501 4.2 24.2 1.0
C2A A:HEM501 4.2 27.1 1.0
C3A A:HEM501 4.3 23.8 1.0
C2B A:HEM501 4.3 21.6 1.0
C3B A:HEM501 4.3 22.3 1.0
C2D A:HEM501 4.3 29.4 1.0
C3D A:HEM501 4.3 28.7 1.0
OG A:SER234 4.4 25.4 1.0
CD A:PRO343 4.7 28.9 1.0
CB A:SER234 4.7 26.2 1.0

Iron binding site 2 out of 2 in 8q6x

Go back to Iron Binding Sites List in 8q6x
Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome P450 GYMB5 From Streptomyces Katrae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:24.8
occ:1.00
FE B:HEM501 0.0 24.8 1.0
ND B:HEM501 2.0 25.0 1.0
NB B:HEM501 2.0 24.2 1.0
NA B:HEM501 2.0 23.5 1.0
NC B:HEM501 2.1 26.4 1.0
SG B:CYS342 2.4 26.9 1.0
C4B B:HEM501 3.0 23.0 1.0
C1D B:HEM501 3.0 26.6 1.0
C4C B:HEM501 3.0 25.7 1.0
C4D B:HEM501 3.0 26.3 1.0
C1B B:HEM501 3.1 23.9 1.0
C1A B:HEM501 3.1 24.5 1.0
C4A B:HEM501 3.1 25.8 1.0
C1C B:HEM501 3.1 22.5 1.0
CB B:CYS342 3.4 25.3 1.0
CHD B:HEM501 3.4 28.2 1.0
CHC B:HEM501 3.4 22.6 1.0
CHB B:HEM501 3.5 25.9 1.0
CHA B:HEM501 3.5 24.8 1.0
CA B:CYS342 4.2 23.3 1.0
C3C B:HEM501 4.2 24.8 1.0
C3B B:HEM501 4.3 24.0 1.0
C2A B:HEM501 4.3 26.2 1.0
C3A B:HEM501 4.3 23.0 1.0
C2C B:HEM501 4.3 22.5 1.0
C2B B:HEM501 4.3 23.1 1.0
C2D B:HEM501 4.3 27.8 1.0
C3D B:HEM501 4.3 26.2 1.0
OG B:SER234 4.5 26.3 1.0
CB B:SER234 4.7 24.3 1.0
CD B:PRO343 4.7 27.5 1.0
C B:CYS342 5.0 25.6 1.0

Reference:

J.Freytag, A.Martin, J.C.Muller, T.Kelm, T.Stehle, S.M.Li, G.Zocher. Intramolecular Coupling and Nucleobase Transfer - How Cytochrome P450 Enzymes Gymbx Establish Their Chemoselectivity Chemcatchem V. 16 2024.
ISSN: ESSN 1867-3899
DOI: 10.1002/CCTC.202481002
Page generated: Sat Aug 10 15:16:57 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy