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Iron in PDB 8r8g: Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2

Protein crystallography data

The structure of Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2, PDB code: 8r8g was solved by T.Barends, I.Schlichting, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 9.96 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.1, 28.8, 35.8, 90, 106.9, 90
R / Rfree (%) 17.9 / 21.5

Iron Binding Sites:

The binding sites of Iron atom in the Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2 (pdb code 8r8g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2, PDB code: 8r8g:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8r8g

Go back to Iron Binding Sites List in 8r8g
Iron binding site 1 out of 2 in the Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:10.3
occ:0.76
FE A:HEM201 0.0 10.3 0.8
FE A:HEM201 0.2 10.8 0.2
C A:CMO204 1.7 12.0 0.8
ND A:HEM201 1.8 12.8 0.2
NC A:HEM201 2.0 9.3 0.2
NB A:HEM201 2.0 9.8 0.8
ND A:HEM201 2.0 12.6 0.8
NC A:HEM201 2.0 10.3 0.8
NA A:HEM201 2.0 10.3 0.8
NA A:HEM201 2.1 10.7 0.2
NE2 A:HIS93 2.1 9.9 0.8
NB A:HEM201 2.1 10.3 0.2
NE2 A:HIS93 2.3 10.4 0.2
C1D A:HEM201 2.8 11.9 0.2
C4D A:HEM201 2.9 11.8 0.2
O A:CMO204 2.9 17.7 0.8
C4C A:HEM201 3.0 10.8 0.2
C4C A:HEM201 3.0 10.7 0.8
C1D A:HEM201 3.0 11.0 0.8
C4D A:HEM201 3.0 12.1 0.8
C4B A:HEM201 3.0 9.4 0.8
C1C A:HEM201 3.0 10.3 0.2
C4B A:HEM201 3.0 10.2 0.2
C1B A:HEM201 3.0 10.3 0.8
C1C A:HEM201 3.1 10.2 0.8
C1A A:HEM201 3.1 10.7 0.8
C4A A:HEM201 3.1 11.6 0.8
CE1 A:HIS93 3.1 12.0 0.8
C1A A:HEM201 3.1 11.2 0.2
CD2 A:HIS93 3.1 9.6 0.8
C1B A:HEM201 3.1 10.3 0.2
C4A A:HEM201 3.2 11.5 0.2
CE1 A:HIS93 3.3 12.3 0.2
CHD A:HEM201 3.3 12.1 0.2
CD2 A:HIS93 3.3 9.9 0.2
CHD A:HEM201 3.4 12.1 0.8
CHC A:HEM201 3.4 10.8 0.2
CHB A:HEM201 3.4 10.2 0.8
CHA A:HEM201 3.4 11.0 0.8
CHA A:HEM201 3.4 12.0 0.2
CHC A:HEM201 3.4 10.2 0.8
CHB A:HEM201 3.6 11.2 0.2
C A:CMO204 3.7 11.3 0.2
C2D A:HEM201 4.1 11.9 0.2
C3D A:HEM201 4.1 12.9 0.2
C3C A:HEM201 4.2 11.2 0.2
ND1 A:HIS93 4.2 12.5 0.8
C2C A:HEM201 4.2 11.0 0.2
C3C A:HEM201 4.2 11.0 0.8
C2D A:HEM201 4.2 11.5 0.8
C3D A:HEM201 4.2 12.5 0.8
C2C A:HEM201 4.3 11.2 0.8
CG A:HIS93 4.3 10.8 0.8
C3B A:HEM201 4.3 10.7 0.8
C2B A:HEM201 4.3 10.3 0.8
C2A A:HEM201 4.3 10.5 0.8
C3A A:HEM201 4.3 11.3 0.8
C2A A:HEM201 4.3 10.4 0.2
C3B A:HEM201 4.3 10.3 0.2
C3A A:HEM201 4.3 11.8 0.2
C2B A:HEM201 4.4 11.0 0.2
ND1 A:HIS93 4.4 10.9 0.2
NE2 A:HIS64 4.4 16.6 0.2
CG A:HIS93 4.5 11.3 0.2
CG2 A:VAL68 4.6 13.0 0.2
NE2 A:HIS64 4.6 17.6 0.8
O A:CMO204 4.6 16.9 0.2
CG2 A:VAL68 4.7 14.1 0.8
CE1 A:HIS64 5.0 18.7 0.2

Iron binding site 2 out of 2 in 8r8g

Go back to Iron Binding Sites List in 8r8g
Iron binding site 2 out of 2 in the Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Ensemble-Refined Carboxymyoglobin Photolysis Power Titration, 18 Mj/CM2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:10.8
occ:0.24
FE A:HEM201 0.0 10.8 0.2
FE A:HEM201 0.2 10.3 0.8
ND A:HEM201 1.9 12.8 0.2
C A:CMO204 1.9 12.0 0.8
NE2 A:HIS93 1.9 9.9 0.8
NB A:HEM201 1.9 9.8 0.8
NA A:HEM201 2.0 10.3 0.8
NA A:HEM201 2.0 10.7 0.2
NC A:HEM201 2.1 9.3 0.2
NB A:HEM201 2.1 10.3 0.2
ND A:HEM201 2.1 12.6 0.8
NC A:HEM201 2.1 10.3 0.8
NE2 A:HIS93 2.1 10.4 0.2
CE1 A:HIS93 2.9 12.0 0.8
C1D A:HEM201 2.9 11.9 0.2
C1B A:HEM201 3.0 10.3 0.8
C4D A:HEM201 3.0 11.8 0.2
C4A A:HEM201 3.0 11.6 0.8
CD2 A:HIS93 3.0 9.6 0.8
C4B A:HEM201 3.0 10.2 0.2
C4B A:HEM201 3.0 9.4 0.8
C1A A:HEM201 3.0 10.7 0.8
C1A A:HEM201 3.0 11.2 0.2
C1B A:HEM201 3.1 10.3 0.2
C4C A:HEM201 3.1 10.8 0.2
C4A A:HEM201 3.1 11.5 0.2
CE1 A:HIS93 3.1 12.3 0.2
C4D A:HEM201 3.1 12.1 0.8
C1C A:HEM201 3.1 10.3 0.2
C1C A:HEM201 3.1 10.2 0.8
O A:CMO204 3.1 17.7 0.8
C1D A:HEM201 3.1 11.0 0.8
C4C A:HEM201 3.1 10.7 0.8
CD2 A:HIS93 3.2 9.9 0.2
CHB A:HEM201 3.3 10.2 0.8
CHD A:HEM201 3.4 12.1 0.2
CHC A:HEM201 3.4 10.8 0.2
CHA A:HEM201 3.4 11.0 0.8
CHA A:HEM201 3.4 12.0 0.2
CHC A:HEM201 3.4 10.2 0.8
CHB A:HEM201 3.5 11.2 0.2
CHD A:HEM201 3.5 12.1 0.8
C A:CMO204 3.8 11.3 0.2
ND1 A:HIS93 4.0 12.5 0.8
CG A:HIS93 4.1 10.8 0.8
C2B A:HEM201 4.2 10.3 0.8
C2D A:HEM201 4.2 11.9 0.2
C3A A:HEM201 4.2 11.3 0.8
C3B A:HEM201 4.2 10.7 0.8
C3D A:HEM201 4.2 12.9 0.2
C2A A:HEM201 4.2 10.5 0.8
ND1 A:HIS93 4.2 10.9 0.2
C2A A:HEM201 4.2 10.4 0.2
C3A A:HEM201 4.2 11.8 0.2
C3B A:HEM201 4.3 10.3 0.2
C3C A:HEM201 4.3 11.2 0.2
C2B A:HEM201 4.3 11.0 0.2
CG A:HIS93 4.3 11.3 0.2
C2C A:HEM201 4.3 11.0 0.2
C3D A:HEM201 4.3 12.5 0.8
C2C A:HEM201 4.3 11.2 0.8
C2D A:HEM201 4.3 11.5 0.8
C3C A:HEM201 4.3 11.0 0.8
NE2 A:HIS64 4.6 16.6 0.2
CG2 A:VAL68 4.7 13.0 0.2
NE2 A:HIS64 4.8 17.6 0.8
O A:CMO204 4.8 16.9 0.2
CG2 A:VAL68 4.8 14.1 0.8
CD2 A:HIS97 4.9 13.7 0.2

Reference:

T.Barends, I.Schlichting. Influence of Pump Laser Fluence on Ultrafast Dynamics in Myoglobin To Be Published.
Page generated: Thu Aug 7 21:35:40 2025

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