Iron in PDB 8s7v: Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component

All present enzymatic activity of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component:
2.8.4.1;

The structure of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component also contains other interesting chemical elements:

Nickel	(Ni)	2 atoms
Zinc	(Zn)	1 atom
Magnesium	(Mg)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component (pdb code 8s7v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component, PDB code: 8s7v:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:106.3 occ:1.00 FE8 H:S5Q401 0.0 106.3 1.0 NE2 H:HIS84 2.1 87.3 1.0 S3B H:S5Q401 2.3 107.0 1.0 S4B H:S5Q401 2.3 93.0 1.0 S1B H:S5Q401 2.3 99.2 1.0 FE6 H:S5Q401 2.6 118.3 1.0 FE7 H:S5Q401 2.6 107.9 1.0 CD2 H:HIS84 2.6 81.1 1.0 FE5 H:S5Q401 2.6 109.0 1.0 CE1 H:HIS84 3.3 82.9 1.0 CX H:S5Q401 3.4 101.7 1.0 CG H:HIS84 3.9 77.1 1.0 ND1 H:HIS84 4.2 77.8 1.0 CG H:PRO78 4.4 82.5 1.0 CB H:PRO78 4.6 77.3 1.0 CB H:HIS83 4.7 82.5 1.0 CB G:GLU142 4.7 95.7 1.0 S2B H:S5Q401 4.7 96.7 1.0 S5A H:S5Q401 4.7 98.3 1.0 S3A H:S5Q401 4.8 91.7 1.0 CG H:ARG178 4.9 76.9 1.0 FE2 H:S5Q401 4.9 110.3 1.0 FE3 H:S5Q401 4.9 100.0 1.0 FE4 H:S5Q401 5.0 102.9 1.0

Iron binding site 2 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:109.0 occ:1.00 FE5 H:S5Q401 0.0 109.0 1.0 CX H:S5Q401 2.0 101.7 1.0 S1B H:S5Q401 2.3 99.2 1.0 S4B H:S5Q401 2.3 93.0 1.0 S3A H:S5Q401 2.3 91.7 1.0 FE4 H:S5Q401 2.6 102.9 1.0 FE6 H:S5Q401 2.6 118.3 1.0 FE7 H:S5Q401 2.6 107.9 1.0 FE8 H:S5Q401 2.6 106.3 1.0 FE2 H:S5Q401 3.7 110.3 1.0 FE3 H:S5Q401 3.7 100.0 1.0 S3B H:S5Q401 3.8 107.0 1.0 CA H:GLY138 4.0 89.2 1.0 CB H:ARG178 4.2 75.6 1.0 CD H:ARG178 4.3 78.0 1.0 S1A H:S5Q401 4.3 113.6 1.0 S4A H:S5Q401 4.3 97.0 1.0 CG H:ARG178 4.4 76.9 1.0 S2B H:S5Q401 4.4 96.7 1.0 S5A H:S5Q401 4.5 98.3 1.0 NE2 H:HIS84 4.6 87.3 1.0 CD2 H:HIS84 4.7 81.1 1.0 CB G:PRO141 4.8 78.1 1.0 N H:GLY138 4.8 91.2 1.0 OH G:TYR17 4.9 87.0 1.0

Iron binding site 3 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:107.9 occ:1.00 FE7 H:S5Q401 0.0 107.9 1.0 CX H:S5Q401 2.0 101.7 1.0 S5A H:S5Q401 2.2 98.3 1.0 S4B H:S5Q401 2.2 93.0 1.0 S3B H:S5Q401 2.2 107.0 1.0 FE8 H:S5Q401 2.6 106.3 1.0 FE3 H:S5Q401 2.6 100.0 1.0 FE6 H:S5Q401 2.6 118.3 1.0 FE5 H:S5Q401 2.6 109.0 1.0 NZ H:LYS147 3.7 110.7 1.0 FE2 H:S5Q401 3.7 110.3 1.0 FE4 H:S5Q401 3.7 102.9 1.0 S1B H:S5Q401 3.8 99.2 1.0 N H:GLY138 4.0 91.2 1.0 CA H:GLY138 4.0 89.2 1.0 S2A H:S5Q401 4.3 106.0 1.0 S4A H:S5Q401 4.3 97.0 1.0 CG H:PRO78 4.3 82.5 1.0 NE2 H:HIS84 4.3 87.3 1.0 S2B H:S5Q401 4.4 96.7 1.0 S3A H:S5Q401 4.5 91.7 1.0 CD2 H:HIS84 4.6 81.1 1.0 C H:MET137 4.7 92.6 1.0 CB H:PRO78 4.8 77.3 1.0 FE1 H:S5Q401 5.0 113.1 1.0

Iron binding site 4 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:118.3 occ:1.00 FE6 H:S5Q401 0.0 118.3 1.0 CX H:S5Q401 2.0 101.7 1.0 S2B H:S5Q401 2.2 96.7 1.0 S3B H:S5Q401 2.2 107.0 1.0 S1B H:S5Q401 2.2 99.2 1.0 FE2 H:S5Q401 2.6 110.3 1.0 FE8 H:S5Q401 2.6 106.3 1.0 FE7 H:S5Q401 2.6 107.9 1.0 FE5 H:S5Q401 2.6 109.0 1.0 FE3 H:S5Q401 3.7 100.0 1.0 FE4 H:S5Q401 3.7 102.9 1.0 S4B H:S5Q401 3.8 93.0 1.0 N G:GLU142 4.2 95.7 1.0 S2A H:S5Q401 4.2 106.0 1.0 S1A H:S5Q401 4.3 113.6 1.0 N G:GLY143 4.3 89.9 1.0 NE2 H:HIS84 4.3 87.3 1.0 CB G:PRO141 4.4 78.1 1.0 S5A H:S5Q401 4.4 98.3 1.0 N H:GLY113 4.5 107.7 1.0 S3A H:S5Q401 4.5 91.7 1.0 CB G:GLU142 4.6 95.7 1.0 NZ H:LYS147 4.7 110.7 1.0 CB H:ALA112 4.8 106.1 1.0 CA G:GLU142 4.9 92.3 1.0 CA G:PRO141 4.9 85.5 1.0 C G:PRO141 4.9 91.3 1.0 CA H:ALA112 4.9 110.8 1.0 FE1 H:S5Q401 5.0 113.1 1.0

Iron binding site 5 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:102.9 occ:1.00 FE4 H:S5Q401 0.0 102.9 1.0 CX H:S5Q401 2.0 101.7 1.0 S3A H:S5Q401 2.2 91.7 1.0 S4A H:S5Q401 2.3 97.0 1.0 S1A H:S5Q401 2.3 113.6 1.0 FE5 H:S5Q401 2.6 109.0 1.0 FE3 H:S5Q401 2.6 100.0 1.0 FE1 H:S5Q401 2.7 113.1 1.0 FE2 H:S5Q401 2.7 110.3 1.0 FE7 H:S5Q401 3.7 107.9 1.0 FE6 H:S5Q401 3.7 118.3 1.0 S2A H:S5Q401 3.8 106.0 1.0 CD2 H:PHE140 3.9 93.8 1.0 CA H:GLY138 4.1 89.2 1.0 S4B H:S5Q401 4.3 93.0 1.0 N H:ASN139 4.3 84.9 1.0 S1B H:S5Q401 4.3 99.2 1.0 OD1 H:ASN139 4.4 103.3 1.0 CE2 H:PHE140 4.4 89.2 1.0 S5A H:S5Q401 4.5 98.3 1.0 S2B H:S5Q401 4.5 96.7 1.0 C H:GLY138 4.7 89.8 1.0 CG H:PHE140 4.9 95.2 1.0 CB G:PRO141 4.9 78.1 1.0 SG H:CYS143 4.9 99.7 1.0 CB H:CYS143 4.9 97.8 1.0 OH G:TYR17 5.0 87.0 1.0 FE8 H:S5Q401 5.0 106.3 1.0

Iron binding site 6 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:113.1 occ:1.00 FE1 H:S5Q401 0.0 113.1 1.0 S2A H:S5Q401 2.3 106.0 1.0 S4A H:S5Q401 2.3 97.0 1.0 SG H:CYS143 2.3 99.7 1.0 S1A H:S5Q401 2.3 113.6 1.0 CB H:CYS143 2.6 97.8 1.0 FE3 H:S5Q401 2.6 100.0 1.0 FE2 H:S5Q401 2.7 110.3 1.0 FE4 H:S5Q401 2.7 102.9 1.0 CX H:S5Q401 3.4 101.7 1.0 CD2 H:PHE140 3.8 93.8 1.0 CA H:CYS143 4.1 96.7 1.0 CB H:PHE140 4.2 93.8 1.0 CG H:PHE140 4.5 95.2 1.0 CE2 H:PHE140 4.8 89.2 1.0 S2B H:S5Q401 4.8 96.7 1.0 S5A H:S5Q401 4.8 98.3 1.0 S3A H:S5Q401 4.8 91.7 1.0 C H:CYS143 4.9 103.7 1.0 N H:CYS143 4.9 101.4 1.0 FE6 H:S5Q401 5.0 118.3 1.0 FE7 H:S5Q401 5.0 107.9 1.0

Iron binding site 7 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:100.0 occ:1.00 FE3 H:S5Q401 0.0 100.0 1.0 CX H:S5Q401 2.0 101.7 1.0 S5A H:S5Q401 2.2 98.3 1.0 S4A H:S5Q401 2.2 97.0 1.0 S2A H:S5Q401 2.3 106.0 1.0 FE7 H:S5Q401 2.6 107.9 1.0 FE4 H:S5Q401 2.6 102.9 1.0 FE1 H:S5Q401 2.6 113.1 1.0 FE2 H:S5Q401 2.7 110.3 1.0 NZ H:LYS147 3.6 110.7 1.0 FE6 H:S5Q401 3.7 118.3 1.0 FE5 H:S5Q401 3.7 109.0 1.0 S1A H:S5Q401 3.9 113.6 1.0 CB H:CYS143 4.0 97.8 1.0 CA H:GLY138 4.1 89.2 1.0 N H:GLY138 4.2 91.2 1.0 S3B H:S5Q401 4.2 107.0 1.0 S4B H:S5Q401 4.2 93.0 1.0 S2B H:S5Q401 4.4 96.7 1.0 S3A H:S5Q401 4.5 91.7 1.0 SG H:CYS143 4.6 99.7 1.0 O H:GLY113 4.8 108.0 1.0 CE H:LYS147 4.8 110.2 1.0 CD H:LYS147 4.9 110.9 1.0 FE8 H:S5Q401 4.9 106.3 1.0

Iron binding site 8 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe401 b:110.3 occ:1.00 FE2 H:S5Q401 0.0 110.3 1.0 CX H:S5Q401 2.0 101.7 1.0 S2B H:S5Q401 2.2 96.7 1.0 S2A H:S5Q401 2.2 106.0 1.0 S1A H:S5Q401 2.3 113.6 1.0 FE6 H:S5Q401 2.6 118.3 1.0 FE1 H:S5Q401 2.7 113.1 1.0 FE3 H:S5Q401 2.7 100.0 1.0 FE4 H:S5Q401 2.7 102.9 1.0 FE7 H:S5Q401 3.7 107.9 1.0 FE5 H:S5Q401 3.7 109.0 1.0 S4A H:S5Q401 3.8 97.0 1.0 S3B H:S5Q401 4.2 107.0 1.0 S1B H:S5Q401 4.2 99.2 1.0 CB G:PRO141 4.4 78.1 1.0 CE G:MET144 4.5 103.3 1.0 SG H:CYS143 4.5 99.7 1.0 O H:GLY113 4.5 108.0 1.0 S3A H:S5Q401 4.5 91.7 1.0 S5A H:S5Q401 4.5 98.3 1.0 C H:GLY113 4.6 109.0 1.0 N H:GLY113 4.7 107.7 1.0 NZ H:LYS147 4.7 110.7 1.0 CA H:GLY113 4.8 107.1 1.0 CB H:CYS143 4.9 97.8 1.0 FE8 H:S5Q401 4.9 106.3 1.0

Iron binding site 9 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe201 b:129.0 occ:1.00 FE8 I:S5Q201 0.0 129.0 1.0 ND1 I:HIS118 2.2 97.0 1.0 S3B I:S5Q201 2.3 113.0 1.0 S4B I:S5Q201 2.3 108.1 1.0 S1B I:S5Q201 2.3 115.9 1.0 FE6 I:S5Q201 2.6 136.7 1.0 FE7 I:S5Q201 2.6 124.6 1.0 FE5 I:S5Q201 2.6 134.3 1.0 CG I:HIS118 3.1 87.2 1.0 CB I:HIS118 3.2 83.8 1.0 CE1 I:HIS118 3.3 92.2 1.0 CX I:S5Q201 3.4 123.9 1.0 CG2 I:VAL115 3.8 82.7 1.0 CB I:VAL115 3.9 88.5 1.0 CD2 I:HIS118 4.3 85.6 1.0 NE2 I:HIS118 4.3 89.5 1.0 N I:VAL115 4.4 91.1 1.0 CG1 C:VAL150 4.4 107.4 1.0 O I:VAL115 4.6 98.1 1.0 S2B I:S5Q201 4.7 107.1 1.0 CA I:VAL115 4.7 88.5 1.0 S5A I:S5Q201 4.7 101.6 1.0 CA I:HIS118 4.8 84.0 1.0 N C:VAL150 4.8 111.5 1.0 S3A I:S5Q201 4.8 105.2 1.0 FE2 I:S5Q201 4.9 127.4 1.0 FE3 I:S5Q201 4.9 126.0 1.0 FE4 I:S5Q201 5.0 128.7 1.0

Iron binding site 10 out of 24 in the Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component within 5.0Å range: probe atom residue distance (Å) B Occ I:Fe201 b:134.3 occ:1.00 FE5 I:S5Q201 0.0 134.3 1.0 CX I:S5Q201 2.0 123.9 1.0 S4B I:S5Q201 2.3 108.1 1.0 S1B I:S5Q201 2.3 115.9 1.0 S3A I:S5Q201 2.3 105.2 1.0 FE4 I:S5Q201 2.6 128.7 1.0 FE6 I:S5Q201 2.6 136.7 1.0 FE7 I:S5Q201 2.6 124.6 1.0 FE8 I:S5Q201 2.6 129.0 1.0 FE2 I:S5Q201 3.7 127.4 1.0 FE3 I:S5Q201 3.7 126.0 1.0 S3B I:S5Q201 3.8 113.0 1.0 CA C:VAL150 4.0 112.4 1.0 N C:VAL150 4.3 111.5 1.0 S1A I:S5Q201 4.3 118.1 1.0 S4A I:S5Q201 4.3 115.9 1.0 ND1 I:HIS118 4.3 97.0 1.0 S2B I:S5Q201 4.4 107.1 1.0 S5A I:S5Q201 4.5 101.6 1.0 CG1 C:VAL150 4.5 107.4 1.0 N I:GLY78 4.6 85.8 1.0 NZ I:LYS122 4.7 85.5 1.0 C C:VAL150 4.9 113.6 1.0 CB C:VAL150 4.9 107.2 1.0 N C:GLN151 5.0 110.1 1.0 FE1 I:S5Q201 5.0 125.9 1.0

F.Ramirez-Amador, S.Paul, A.Kumar, J.M.Schuller. Methyl-Coenzyme M Reductase Activation Complex Binding to the A2 Component To Be Published.