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Iron in PDB 8vqi: Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide

Enzymatic activity of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide

All present enzymatic activity of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide:
1.3.7.7;

Other elements in 8vqi:

The structure of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Copper (Cu) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide (pdb code 8vqi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide, PDB code: 8vqi:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8vqi

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Iron binding site 1 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:159.5
occ:1.00
 FE1 A:SF4501 0.0 159.5 1.0
SG A:CYS29 1.5 96.0 1.0
S4 A:SF4501 2.3 148.1 1.0
S2 A:SF4501 2.3 150.1 1.0
S3 A:SF4501 2.3 153.6 1.0
CB A:CYS29 2.5 97.5 1.0
FE3 A:SF4501 2.7 159.7 1.0
FE2 A:SF4501 2.7 160.0 1.0
FE4 A:SF4501 2.7 171.0 1.0
SG A:CYS54 3.7 91.1 1.0
SG A:CYS115 3.8 111.1 1.0
S1 A:SF4501 3.8 154.1 1.0
CA A:CYS29 4.0 90.1 1.0
OD1 B:ASP36 4.2 96.9 1.0
O B:GLY35 4.3 103.9 1.0
N A:GLY148 4.4 92.8 1.0
CD2 A:LEU57 4.4 78.7 1.0
N A:CYS29 4.5 97.0 1.0
C A:CYS29 4.6 87.8 1.0
C B:GLY35 4.6 103.2 1.0
CA A:GLY148 4.6 95.8 1.0
CG A:LEU31 4.7 84.6 1.0
CD1 A:LEU31 4.9 88.3 1.0
O A:CYS29 5.0 98.3 1.0
CA B:GLY35 5.0 99.7 1.0

Iron binding site 2 out of 8 in 8vqi

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Iron binding site 2 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:160.0
occ:1.00
 FE2 A:SF4501 0.0 160.0 1.0
OD1 B:ASP36 2.1 96.9 1.0
S4 A:SF4501 2.2 148.1 1.0
S3 A:SF4501 2.3 153.6 1.0
S1 A:SF4501 2.3 154.1 1.0
FE3 A:SF4501 2.7 159.7 1.0
FE1 A:SF4501 2.7 159.5 1.0
FE4 A:SF4501 2.7 171.0 1.0
CG B:ASP36 3.0 94.5 1.0
OD2 B:ASP36 3.5 97.0 1.0
SG A:CYS54 3.8 91.1 1.0
SG A:CYS115 3.8 111.1 1.0
S2 A:SF4501 3.8 150.1 1.0
CG B:PRO33 4.0 100.1 1.0
SG A:CYS29 4.1 96.0 1.0
CB B:ASP36 4.2 95.5 1.0
CA B:ASP36 4.4 94.9 1.0
CG2 A:THR53 4.5 81.5 1.0
N B:ASP36 4.5 101.5 1.0
CB A:THR53 4.6 80.0 1.0
C B:GLY35 4.8 103.2 1.0
O B:GLY35 4.8 103.9 1.0
CB A:CYS29 4.8 97.5 1.0
CD B:PRO33 4.9 100.2 1.0
CB A:CYS115 5.0 105.0 1.0

Iron binding site 3 out of 8 in 8vqi

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Iron binding site 3 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:159.7
occ:1.00
 FE3 A:SF4501 0.0 159.7 1.0
SG A:CYS54 1.2 91.1 1.0
S1 A:SF4501 2.3 154.1 1.0
S4 A:SF4501 2.3 148.1 1.0
S2 A:SF4501 2.3 150.1 1.0
FE2 A:SF4501 2.7 160.0 1.0
FE1 A:SF4501 2.7 159.5 1.0
FE4 A:SF4501 2.7 171.0 1.0
CB A:CYS54 2.9 82.1 1.0
CA A:CYS54 3.5 84.8 1.0
SG A:CYS29 3.8 96.0 1.0
N A:CYS54 3.8 81.5 1.0
S3 A:SF4501 3.8 153.6 1.0
SG A:CYS115 3.8 111.1 1.0
CD1 A:LEU31 4.3 88.3 1.0
CB A:SER114 4.5 107.2 1.0
OD1 B:ASP36 4.6 96.9 1.0
C A:THR53 4.6 79.7 1.0
N A:CYS115 4.7 99.0 1.0
CD A:PRO116 4.8 111.7 1.0
CB A:CYS115 4.8 105.0 1.0
CG A:LEU31 4.9 84.6 1.0
C A:CYS54 5.0 86.2 1.0
OG A:SER114 5.0 114.5 1.0

Iron binding site 4 out of 8 in 8vqi

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Iron binding site 4 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:171.0
occ:1.00
 FE4 A:SF4501 0.0 171.0 1.0
SG A:CYS115 1.3 111.1 1.0
S2 A:SF4501 2.3 150.1 1.0
S3 A:SF4501 2.3 153.6 1.0
S1 A:SF4501 2.3 154.1 1.0
FE3 A:SF4501 2.7 159.7 1.0
FE1 A:SF4501 2.7 159.5 1.0
FE2 A:SF4501 2.7 160.0 1.0
CB A:CYS115 2.8 105.0 1.0
N A:CYS115 3.5 99.0 1.0
SG A:CYS54 3.7 91.1 1.0
CA A:CYS115 3.8 104.7 1.0
N A:GLY148 3.8 92.8 1.0
S4 A:SF4501 3.8 148.1 1.0
CG B:PRO33 3.9 100.1 1.0
SG A:CYS29 4.0 96.0 1.0
CA A:GLY148 4.4 95.8 1.0
CB A:CYS29 4.4 97.5 1.0
CB B:PRO33 4.5 105.5 1.0
OG1 B:THR96 4.5 133.7 1.0
CD A:PRO116 4.6 111.7 1.0
OD1 B:ASP36 4.7 96.9 1.0
C A:SER114 4.8 105.7 1.0
C A:SER147 4.9 94.0 1.0
CA A:SER147 4.9 94.2 1.0
C A:CYS115 5.0 112.7 1.0

Iron binding site 5 out of 8 in 8vqi

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Iron binding site 5 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:186.8
occ:1.00
 FE1 C:SF4501 0.0 186.8 1.0
SG C:CYS29 1.4 107.5 1.0
S4 C:SF4501 2.3 173.8 1.0
S3 C:SF4501 2.3 177.5 1.0
S2 C:SF4501 2.3 176.8 1.0
CB C:CYS29 2.6 119.9 1.0
FE2 C:SF4501 2.7 180.6 1.0
FE3 C:SF4501 2.7 184.3 1.0
FE4 C:SF4501 2.7 189.2 1.0
SG C:CYS115 3.8 123.5 1.0
SG C:CYS54 3.8 111.8 1.0
S1 C:SF4501 3.8 178.3 1.0
CA C:CYS29 4.0 113.6 1.0
OD1 D:ASP36 4.0 116.7 1.0
O D:GLY35 4.2 126.0 1.0
CD2 C:LEU57 4.3 96.8 1.0
N C:CYS29 4.4 109.3 1.0
C D:GLY35 4.4 123.6 1.0
N C:GLY148 4.5 115.0 1.0
C C:CYS29 4.7 110.0 1.0
CG C:LEU31 4.7 96.9 1.0
CA D:GLY35 4.7 121.2 1.0
CD1 C:LEU31 4.8 99.8 1.0
CA C:GLY148 4.9 120.7 1.0

Iron binding site 6 out of 8 in 8vqi

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Iron binding site 6 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:180.6
occ:1.00
 FE2 C:SF4501 0.0 180.6 1.0
OD1 D:ASP36 1.7 116.7 1.0
S4 C:SF4501 2.3 173.8 1.0
S3 C:SF4501 2.3 177.5 1.0
S1 C:SF4501 2.3 178.3 1.0
FE1 C:SF4501 2.7 186.8 1.0
FE3 C:SF4501 2.7 184.3 1.0
FE4 C:SF4501 2.7 189.2 1.0
CG D:ASP36 2.8 116.5 1.0
OD2 D:ASP36 3.3 121.9 1.0
S2 C:SF4501 3.9 176.8 1.0
SG C:CYS115 3.9 123.5 1.0
SG C:CYS54 3.9 111.8 1.0
CB D:ASP36 4.0 110.7 1.0
SG C:CYS29 4.0 107.5 1.0
CG2 C:THR53 4.0 99.8 1.0
CA D:ASP36 4.2 115.3 1.0
N D:ASP36 4.2 119.5 1.0
CG D:PRO33 4.3 117.9 1.0
O D:GLY35 4.4 126.0 1.0
C D:GLY35 4.4 123.6 1.0
CB C:THR53 4.7 101.9 1.0
CE2 D:TYR38 4.8 108.6 1.0

Iron binding site 7 out of 8 in 8vqi

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Iron binding site 7 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:184.3
occ:1.00
 FE3 C:SF4501 0.0 184.3 1.0
SG C:CYS54 1.3 111.8 1.0
S1 C:SF4501 2.3 178.3 1.0
S4 C:SF4501 2.3 173.8 1.0
S2 C:SF4501 2.3 176.8 1.0
FE1 C:SF4501 2.7 186.8 1.0
FE4 C:SF4501 2.7 189.2 1.0
FE2 C:SF4501 2.7 180.6 1.0
CB C:CYS54 3.0 102.6 1.0
OG C:SER114 3.3 127.1 1.0
CA C:CYS54 3.6 99.5 1.0
SG C:CYS115 3.8 123.5 1.0
S3 C:SF4501 3.8 177.5 1.0
SG C:CYS29 3.9 107.5 1.0
N C:CYS54 3.9 104.3 1.0
CD1 C:LEU31 4.3 99.8 1.0
OD1 D:ASP36 4.3 116.7 1.0
C C:THR53 4.6 104.1 1.0
CD C:PRO116 4.7 128.6 1.0
N C:CYS115 4.7 120.6 1.0
CB C:SER114 4.7 125.1 1.0
CB C:CYS115 4.8 124.3 1.0
CG2 C:THR53 5.0 99.8 1.0

Iron binding site 8 out of 8 in 8vqi

Go back to Iron Binding Sites List in 8vqi
Iron binding site 8 out of 8 in the Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor with Pchlide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:189.2
occ:1.00
 FE4 C:SF4501 0.0 189.2 1.0
SG C:CYS115 1.3 123.5 1.0
S3 C:SF4501 2.3 177.5 1.0
S1 C:SF4501 2.3 178.3 1.0
S2 C:SF4501 2.3 176.8 1.0
FE3 C:SF4501 2.7 184.3 1.0
FE1 C:SF4501 2.7 186.8 1.0
FE2 C:SF4501 2.7 180.6 1.0
CB C:CYS115 2.8 124.3 1.0
N C:CYS115 3.6 120.6 1.0
CA C:CYS115 3.8 124.4 1.0
SG C:CYS54 3.8 111.8 1.0
S4 C:SF4501 3.9 173.8 1.0
SG C:CYS29 4.0 107.5 1.0
CG D:PRO33 4.0 117.9 1.0
N C:GLY148 4.1 115.0 1.0
OG C:SER114 4.2 127.1 1.0
OD1 D:ASP36 4.3 116.7 1.0
CB C:CYS29 4.5 119.9 1.0
OG1 D:THR96 4.5 151.7 1.0
CD C:PRO116 4.6 128.6 1.0
CB D:PRO33 4.7 125.8 1.0
CA C:GLY148 4.8 120.7 1.0
C C:SER114 4.8 126.5 1.0
CA C:SER147 4.9 119.2 1.0
C C:CYS115 5.0 128.9 1.0

Reference:

R.Kashyap, E.Antony. Cryoem Structure of Bchn-Bchb Electron Acceptor Component Protein of Dpor To Be Published.
Page generated: Fri Aug 8 00:08:09 2025

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