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Iron in PDB 8y4y: Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate

Protein crystallography data

The structure of Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate, PDB code: 8y4y was solved by J.Y.Jiang, P.Lu, K.Nagata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.06 / 2.51
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 100.497, 100.497, 205.983, 90, 90, 90
R / Rfree (%) 22.4 / 26.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate (pdb code 8y4y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate, PDB code: 8y4y:

Iron binding site 1 out of 1 in 8y4y

Go back to Iron Binding Sites List in 8y4y
Iron binding site 1 out of 1 in the Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe307

b:106.7
occ:1.00
OB2 A:FLC305 2.2 91.4 1.0
OHB A:FLC305 2.3 70.7 1.0
OA1 A:FLC306 2.4 116.8 1.0
OG2 A:FLC305 2.4 65.9 1.0
OHB A:FLC306 2.7 113.1 1.0
CBC A:FLC306 2.9 134.7 1.0
CBC A:FLC305 3.0 79.1 1.0
CB A:FLC305 3.1 68.9 1.0
CAC A:FLC306 3.1 124.1 1.0
CB A:FLC306 3.2 133.9 1.0
OB2 A:FLC306 3.2 125.2 1.0
OB1 A:FLC306 3.2 127.4 1.0
CGC A:FLC305 3.4 58.0 1.0
NH2 A:ARG110 3.6 91.1 1.0
CA A:FLC306 3.6 137.2 1.0
CG A:FLC305 3.7 66.2 1.0
OA2 A:FLC306 4.0 97.8 1.0
NH2 A:ARG88 4.1 55.0 1.0
OB1 A:FLC305 4.2 66.6 1.0
NE A:ARG130 4.4 102.8 1.0
CA A:FLC305 4.4 59.9 1.0
OA2 A:FLC305 4.4 78.2 1.0
NH2 A:ARG130 4.5 93.1 1.0
OG1 A:FLC305 4.5 69.8 1.0
CZ A:ARG130 4.5 97.1 1.0
C1 A:GOL301 4.6 88.2 1.0
CG A:FLC306 4.6 124.1 1.0
CD2 A:LEU275 4.7 47.5 1.0
CZ A:ARG110 4.8 79.3 1.0

Reference:

J.Y.Jiang, P.Lu, K.Nagata. Crystal Structure of Ferric Iron-Binding Protein (Fecb) From Vibrio Alginolyticus in Complex with Ferric Citrate To Be Published.
Page generated: Sun Feb 9 07:21:14 2025

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