Atomistry » Iron » PDB 8xnq-8z4q » 8z11
Atomistry »
  Iron »
    PDB 8xnq-8z4q »
      8z11 »

Iron in PDB 8z11: Cryo-Em Structure of Haptophyte Photosystem I

Enzymatic activity of Cryo-Em Structure of Haptophyte Photosystem I

All present enzymatic activity of Cryo-Em Structure of Haptophyte Photosystem I:
1.97.1.12;

Other elements in 8z11:

The structure of Cryo-Em Structure of Haptophyte Photosystem I also contains other interesting chemical elements:

Magnesium (Mg) 342 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Haptophyte Photosystem I (pdb code 8z11). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of Haptophyte Photosystem I, PDB code: 8z11:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 1 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe847

b:32.4
occ:1.00
FE1 a:SF4847 0.0 32.4 1.0
S3 a:SF4847 2.3 32.4 1.0
S4 a:SF4847 2.3 32.4 1.0
S2 a:SF4847 2.3 32.4 1.0
FE3 a:SF4847 2.7 32.4 1.0
FE4 a:SF4847 2.7 32.4 1.0
FE2 a:SF4847 2.7 32.4 1.0
SG b:CYS568 3.1 30.8 1.0
S1 a:SF4847 3.9 32.4 1.0
CZ3 b:TRP667 3.9 27.2 1.0
CD1 a:ILE721 4.0 28.2 1.0
CB b:CYS568 4.1 30.8 1.0
CE3 b:TRP667 4.5 27.2 1.0
SG a:CYS575 4.5 28.5 1.0
NH2 a:ARG725 4.5 27.0 1.0
CG2 a:ILE721 4.6 28.2 1.0
CA b:CYS568 4.6 30.8 1.0
CG1 a:ILE721 4.8 28.2 1.0
CH2 b:TRP667 4.9 27.2 1.0
CB a:CYS575 4.9 28.5 1.0
N b:CYS568 4.9 30.8 1.0

Iron binding site 2 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 2 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe847

b:32.4
occ:1.00
FE2 a:SF4847 0.0 32.4 1.0
S1 a:SF4847 2.3 32.4 1.0
S4 a:SF4847 2.3 32.4 1.0
S3 a:SF4847 2.3 32.4 1.0
FE3 a:SF4847 2.7 32.4 1.0
FE1 a:SF4847 2.7 32.4 1.0
FE4 a:SF4847 2.7 32.4 1.0
SG a:CYS575 3.1 28.5 1.0
CB a:CYS575 3.3 28.5 1.0
S2 a:SF4847 3.9 32.4 1.0
SG a:CYS584 4.2 28.1 1.0
O a:GLY577 4.5 28.9 1.0
CA a:CYS584 4.6 28.1 1.0
SG b:CYS559 4.6 30.7 1.0
C a:GLY577 4.6 28.9 1.0
CB a:CYS584 4.7 28.1 1.0
CA a:CYS575 4.8 28.5 1.0
N a:GLY577 4.9 28.9 1.0
N a:CYS584 4.9 28.1 1.0
CA a:GLY577 4.9 28.9 1.0

Iron binding site 3 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 3 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe847

b:32.4
occ:1.00
FE3 a:SF4847 0.0 32.4 1.0
S2 a:SF4847 2.3 32.4 1.0
S1 a:SF4847 2.3 32.4 1.0
S4 a:SF4847 2.3 32.4 1.0
FE4 a:SF4847 2.7 32.4 1.0
FE1 a:SF4847 2.7 32.4 1.0
FE2 a:SF4847 2.7 32.4 1.0
CB b:CYS559 3.0 30.7 1.0
SG b:CYS559 3.1 30.7 1.0
S3 a:SF4847 3.9 32.4 1.0
CA b:CYS559 4.5 30.7 1.0
CA b:CYS568 4.5 30.8 1.0
SG b:CYS568 4.6 30.8 1.0
O b:THR567 4.7 31.0 1.0
O b:PRO558 4.7 30.4 1.0
CB b:CYS568 4.8 30.8 1.0
N b:CYS568 4.9 30.8 1.0
N b:CYS559 4.9 30.7 1.0
C b:PRO558 4.9 30.4 1.0
NH2 b:ARG706 4.9 28.9 1.0
C b:THR567 5.0 31.0 1.0

Iron binding site 4 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 4 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe847

b:32.4
occ:1.00
FE4 a:SF4847 0.0 32.4 1.0
S2 a:SF4847 2.3 32.4 1.0
S3 a:SF4847 2.3 32.4 1.0
S1 a:SF4847 2.3 32.4 1.0
FE3 a:SF4847 2.7 32.4 1.0
FE1 a:SF4847 2.7 32.4 1.0
FE2 a:SF4847 2.7 32.4 1.0
SG a:CYS584 3.0 28.1 1.0
CE3 b:TRP667 3.7 27.2 1.0
CB a:CYS584 3.7 28.1 1.0
CZ3 b:TRP667 3.8 27.2 1.0
S4 a:SF4847 3.9 32.4 1.0
CA a:CYS584 4.5 28.1 1.0
CG1 b:ILE702 4.6 29.1 1.0
CD2 b:TRP667 4.7 27.2 1.0
CD1 b:ILE702 4.7 29.1 1.0
NH2 b:ARG706 4.7 28.9 1.0
CG2 b:ILE702 4.7 29.1 1.0
CH2 b:TRP667 4.9 27.2 1.0

Iron binding site 5 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 5 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe101

b:39.5
occ:1.00
FE1 c:SF4101 0.0 39.5 1.0
S2 c:SF4101 2.3 39.5 1.0
S3 c:SF4101 2.3 39.5 1.0
S4 c:SF4101 2.3 39.5 1.0
FE3 c:SF4101 2.7 39.5 1.0
FE2 c:SF4101 2.7 39.5 1.0
FE4 c:SF4101 2.7 39.5 1.0
SG c:CYS17 3.1 35.5 1.0
SG c:CYS14 3.8 37.9 1.0
CB c:CYS17 3.8 35.5 1.0
S1 c:SF4101 3.9 39.5 1.0
N c:CYS17 4.0 35.5 1.0
N c:THR15 4.2 37.0 1.0
CB c:ALA40 4.2 37.0 1.0
N c:GLN16 4.4 36.2 1.0
N c:CYS14 4.5 37.9 1.0
CA c:CYS17 4.6 35.5 1.0
CA c:THR15 4.6 37.0 1.0
C c:THR15 4.8 37.0 1.0
C c:CYS14 4.8 37.9 1.0
SG c:CYS11 4.8 40.0 1.0
CB c:CYS14 4.9 37.9 1.0

Iron binding site 6 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 6 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe101

b:39.5
occ:1.00
FE2 c:SF4101 0.0 39.5 1.0
S4 c:SF4101 2.3 39.5 1.0
S3 c:SF4101 2.3 39.5 1.0
S1 c:SF4101 2.3 39.5 1.0
FE3 c:SF4101 2.7 39.5 1.0
FE1 c:SF4101 2.7 39.5 1.0
FE4 c:SF4101 2.7 39.5 1.0
SG c:CYS58 3.1 36.5 1.0
CB c:CYS58 3.6 36.5 1.0
S2 c:SF4101 3.9 39.5 1.0
CA c:CYS58 3.9 36.5 1.0
CG1 c:VAL65 4.0 34.6 1.0
CB c:SER64 4.3 37.3 1.0
N c:VAL65 4.3 34.6 1.0
CD c:PRO59 4.4 38.0 1.0
CB c:VAL65 4.4 34.6 1.0
CB c:CYS17 4.5 35.5 1.0
SG c:CYS14 4.6 37.9 1.0
SG c:CYS17 4.7 35.5 1.0
OG c:SER64 4.9 37.3 1.0
C c:CYS58 4.9 36.5 1.0
OG1 c:THR60 4.9 40.4 1.0
N c:CYS58 5.0 36.5 1.0
N c:PRO59 5.0 38.0 1.0
N c:SER64 5.0 37.3 1.0

Iron binding site 7 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 7 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe101

b:39.5
occ:1.00
FE3 c:SF4101 0.0 39.5 1.0
S1 c:SF4101 2.3 39.5 1.0
S4 c:SF4101 2.3 39.5 1.0
S2 c:SF4101 2.3 39.5 1.0
FE2 c:SF4101 2.7 39.5 1.0
FE4 c:SF4101 2.7 39.5 1.0
FE1 c:SF4101 2.7 39.5 1.0
SG c:CYS11 3.1 40.0 1.0
CB c:CYS11 3.2 40.0 1.0
CA c:CYS11 3.4 40.0 1.0
N c:ILE12 3.7 40.6 1.0
S3 c:SF4101 3.9 39.5 1.0
CB c:SER64 4.0 37.3 1.0
C c:CYS11 4.2 40.0 1.0
N c:GLY13 4.3 39.7 1.0
OG c:SER64 4.4 37.3 1.0
N c:CYS11 4.6 40.0 1.0
CG1 c:ILE12 4.8 40.6 1.0
N c:CYS14 4.9 37.9 1.0
CA c:ILE12 4.9 40.6 1.0
C c:ILE12 4.9 40.6 1.0
SG c:CYS14 4.9 37.9 1.0
CB c:ALA40 5.0 37.0 1.0

Iron binding site 8 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 8 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe101

b:39.5
occ:1.00
FE4 c:SF4101 0.0 39.5 1.0
S1 c:SF4101 2.3 39.5 1.0
S2 c:SF4101 2.3 39.5 1.0
S3 c:SF4101 2.3 39.5 1.0
SG c:CYS14 2.4 37.9 1.0
FE3 c:SF4101 2.7 39.5 1.0
FE1 c:SF4101 2.7 39.5 1.0
FE2 c:SF4101 2.7 39.5 1.0
CB c:CYS14 3.3 37.9 1.0
CD c:PRO59 3.5 38.0 1.0
N c:CYS14 3.8 37.9 1.0
S4 c:SF4101 3.9 39.5 1.0
CG1 c:ILE12 4.0 40.6 1.0
CA c:CYS14 4.1 37.9 1.0
CG c:PRO59 4.3 38.0 1.0
CD1 c:ILE12 4.5 40.6 1.0
C c:CYS14 4.6 37.9 1.0
N c:THR15 4.7 37.0 1.0
N c:ILE12 4.7 40.6 1.0
N c:GLY13 4.8 39.7 1.0
N c:PRO59 4.8 38.0 1.0
SG c:CYS58 4.8 36.5 1.0
C c:GLY13 4.9 39.7 1.0
CA c:CYS58 4.9 36.5 1.0
N c:GLN16 5.0 36.2 1.0

Iron binding site 9 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 9 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe102

b:33.1
occ:1.00
FE1 c:SF4102 0.0 33.1 1.0
S3 c:SF4102 2.3 33.1 1.0
S4 c:SF4102 2.3 33.1 1.0
S2 c:SF4102 2.3 33.1 1.0
FE2 c:SF4102 2.7 33.1 1.0
FE4 c:SF4102 2.7 33.1 1.0
FE3 c:SF4102 2.7 33.1 1.0
SG c:CYS21 3.0 34.1 1.0
CD c:PRO22 3.4 33.2 1.0
CA c:CYS21 3.6 34.1 1.0
CB c:CYS21 3.7 34.1 1.0
S1 c:SF4102 3.9 33.1 1.0
N c:PRO22 4.1 33.2 1.0
C c:CYS21 4.3 34.1 1.0
CB c:VAL25 4.6 33.8 1.0
CG c:PRO22 4.6 33.2 1.0
CG2 c:VAL25 4.7 33.8 1.0
N c:CYS23 4.7 34.3 1.0
N c:CYS21 4.8 34.1 1.0
CD1 c:LEU26 4.9 33.9 1.0

Iron binding site 10 out of 12 in 8z11

Go back to Iron Binding Sites List in 8z11
Iron binding site 10 out of 12 in the Cryo-Em Structure of Haptophyte Photosystem I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Haptophyte Photosystem I within 5.0Å range:
probe atom residue distance (Å) B Occ
c:Fe102

b:33.1
occ:1.00
FE2 c:SF4102 0.0 33.1 1.0
S4 c:SF4102 2.3 33.1 1.0
S3 c:SF4102 2.3 33.1 1.0
S1 c:SF4102 2.3 33.1 1.0
FE1 c:SF4102 2.7 33.1 1.0
FE4 c:SF4102 2.7 33.1 1.0
FE3 c:SF4102 2.7 33.1 1.0
SG c:CYS48 3.1 32.5 1.0
CB c:CYS48 3.6 32.5 1.0
S2 c:SF4102 3.9 33.1 1.0
CA c:CYS48 3.9 32.5 1.0
CG2 c:VAL25 4.2 33.8 1.0
CB c:VAL25 4.3 33.8 1.0
N c:ILE49 4.3 31.6 1.0
CG1 c:VAL25 4.4 33.8 1.0
CG2 c:VAL5 4.5 33.0 1.0
N c:GLY50 4.6 32.1 1.0
C c:CYS48 4.6 32.5 1.0
CG2 c:VAL67 4.9 32.8 1.0

Reference:

F.Y.He, L.S.Zhao, X.X.Qu, K.Li, J.P.Guo, F.Zhao, N.Wang, B.Y.Qin, X.L.Chen, J.Gao, L.N.Liu, Y.Z.Zhang. Structural Insights Into the Assembly and Energy Transfer of Haptophyte Photosystem I-Light-Harvesting Supercomplex. Proc.Natl.Acad.Sci.Usa V. 121 78121 2024.
ISSN: ESSN 1091-6490
PubMed: 39642204
DOI: 10.1073/PNAS.2413678121
Page generated: Sat Feb 8 18:45:35 2025

Last articles

Ca in 5NMR
Ca in 5NN9
Ca in 5NM8
Ca in 5NH8
Ca in 5NL7
Ca in 5NIN
Ca in 5NGQ
Ca in 5NH5
Ca in 5NGY
Ca in 5NG1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy