Atomistry » Iron » PDB 8xnq-8z4q » 8z1v
Atomistry »
  Iron »
    PDB 8xnq-8z4q »
      8z1v »

Iron in PDB 8z1v: Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State:
7.4.2.9;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State (pdb code 8z1v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State, PDB code: 8z1v:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 1 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:165.0
occ:1.00
FE1 C:SF4401 0.0 165.0 1.0
S3 C:SF4401 2.2 158.5 1.0
S4 C:SF4401 2.3 165.5 1.0
S2 C:SF4401 2.3 163.4 1.0
SG C:CYS290 2.4 151.8 1.0
FE2 C:SF4401 2.7 155.4 1.0
FE3 C:SF4401 2.7 160.7 1.0
FE4 C:SF4401 2.7 173.1 1.0
CB C:CYS290 3.1 139.3 1.0
S1 C:SF4401 3.8 173.2 1.0
CG C:PRO248 4.3 123.3 1.0
CA C:CYS290 4.6 132.7 1.0
N C:ALA293 4.7 124.0 1.0
CA C:ALA293 4.7 124.1 1.0
CB C:PRO248 4.7 117.5 1.0
SG C:CYS315 4.9 142.0 1.0
SG C:CYS297 4.9 155.9 1.0
C C:TYR292 4.9 128.2 1.0
SG C:CYS284 4.9 128.9 1.0
CD2 C:LEU286 4.9 133.1 1.0
CB C:ALA293 5.0 123.8 1.0

Iron binding site 2 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 2 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:155.4
occ:1.00
FE2 C:SF4401 0.0 155.4 1.0
S4 C:SF4401 2.2 165.5 1.0
S1 C:SF4401 2.3 173.2 1.0
S3 C:SF4401 2.3 158.5 1.0
SG C:CYS284 2.4 128.9 1.0
FE1 C:SF4401 2.7 165.0 1.0
FE3 C:SF4401 2.7 160.7 1.0
FE4 C:SF4401 2.7 173.1 1.0
CB C:CYS284 3.2 122.5 1.0
S2 C:SF4401 3.8 163.4 1.0
CB C:LEU286 4.6 124.3 1.0
CA C:CYS284 4.6 119.3 1.0
CB C:CYS297 4.8 141.3 1.0
SG C:CYS315 4.8 142.0 1.0
SG C:CYS297 4.8 155.9 1.0
SG C:CYS290 4.9 151.8 1.0
CG C:PRO302 4.9 142.0 1.0
CB C:CYS290 5.0 139.3 1.0
N C:ASN287 5.0 126.9 1.0

Iron binding site 3 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 3 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:160.7
occ:1.00
FE3 C:SF4401 0.0 160.7 1.0
S2 C:SF4401 2.2 163.4 1.0
S4 C:SF4401 2.3 165.5 1.0
S1 C:SF4401 2.3 173.2 1.0
SG C:CYS315 2.3 142.0 1.0
FE4 C:SF4401 2.7 173.1 1.0
FE1 C:SF4401 2.7 165.0 1.0
FE2 C:SF4401 2.7 155.4 1.0
CB C:CYS315 3.6 135.0 1.0
S3 C:SF4401 3.8 158.5 1.0
CA C:CYS315 4.0 130.1 1.0
CG C:PRO248 4.3 123.3 1.0
N C:HIS316 4.3 121.9 1.0
CD C:PRO248 4.4 122.8 1.0
C C:CYS315 4.6 132.0 1.0
SG C:CYS290 4.7 151.8 1.0
SG C:CYS297 4.8 155.9 1.0
CE1 C:HIS247 4.9 124.5 1.0
SG C:CYS284 4.9 128.9 1.0
N C:TYR317 4.9 140.7 1.0
ND1 C:HIS247 4.9 113.3 1.0

Iron binding site 4 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 4 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:173.1
occ:1.00
FE4 C:SF4401 0.0 173.1 1.0
S1 C:SF4401 2.2 173.2 1.0
S2 C:SF4401 2.3 163.4 1.0
S3 C:SF4401 2.3 158.5 1.0
SG C:CYS297 2.4 155.9 1.0
FE3 C:SF4401 2.7 160.7 1.0
FE2 C:SF4401 2.7 155.4 1.0
FE1 C:SF4401 2.7 165.0 1.0
CB C:CYS297 3.1 141.3 1.0
S4 C:SF4401 3.8 165.5 1.0
CA C:CYS297 4.3 134.6 1.0
CA C:ALA293 4.6 124.1 1.0
SG C:CYS315 4.6 142.0 1.0
CB C:CYS284 4.7 122.5 1.0
ND1 C:HIS316 4.8 125.0 1.0
SG C:CYS284 4.8 128.9 1.0
SG C:CYS290 5.0 151.8 1.0

Iron binding site 5 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 5 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:173.4
occ:1.00
FE1 D:SF4401 0.0 173.4 1.0
S3 D:SF4401 2.2 177.7 1.0
S4 D:SF4401 2.3 172.1 1.0
S2 D:SF4401 2.3 177.0 1.0
SG D:CYS293 2.5 146.9 1.0
FE2 D:SF4401 2.7 172.0 1.0
FE4 D:SF4401 2.7 175.5 1.0
FE3 D:SF4401 2.7 164.5 1.0
CB D:CYS293 3.3 135.7 1.0
S1 D:SF4401 3.8 166.7 1.0
CB D:PHE295 4.7 126.8 1.0
CA D:CYS293 4.7 127.6 1.0
N D:ASN296 4.7 129.9 1.0
SG D:CYS306 4.8 167.5 1.0
C D:PHE295 4.9 137.3 1.0
CB D:CYS306 4.9 147.1 1.0
CG D:PRO311 5.0 149.8 1.0
SG D:CYS299 5.0 159.3 1.0

Iron binding site 6 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 6 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:172.0
occ:1.00
FE2 D:SF4401 0.0 172.0 1.0
S3 D:SF4401 2.2 177.7 1.0
S4 D:SF4401 2.3 172.1 1.0
S1 D:SF4401 2.3 166.7 1.0
SG D:CYS299 2.5 159.3 1.0
FE1 D:SF4401 2.7 173.4 1.0
FE4 D:SF4401 2.7 175.5 1.0
FE3 D:SF4401 2.7 164.5 1.0
CB D:CYS299 3.3 146.5 1.0
S2 D:SF4401 3.8 177.0 1.0
CG D:PRO256 4.4 130.6 1.0
CD2 D:PHE295 4.7 131.5 1.0
CA D:CYS299 4.7 140.3 1.0
SG D:CYS323 4.7 154.3 1.0
CB D:PRO256 4.7 123.3 1.0
N D:ARG302 4.8 137.2 1.0
SG D:CYS306 4.9 167.5 1.0
CB D:ARG301 4.9 130.2 1.0
C D:ARG301 4.9 131.3 1.0
CA D:ARG302 5.0 137.2 1.0
SG D:CYS293 5.0 146.9 1.0

Iron binding site 7 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 7 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:164.5
occ:1.00
FE3 D:SF4401 0.0 164.5 1.0
S1 D:SF4401 2.2 166.7 1.0
S2 D:SF4401 2.3 177.0 1.0
S4 D:SF4401 2.3 172.1 1.0
SG D:CYS306 2.4 167.5 1.0
FE4 D:SF4401 2.7 175.5 1.0
FE2 D:SF4401 2.7 172.0 1.0
FE1 D:SF4401 2.7 173.4 1.0
CB D:CYS306 3.3 147.1 1.0
S3 D:SF4401 3.8 177.7 1.0
CA D:CYS306 4.5 142.8 1.0
CB D:CYS293 4.8 135.7 1.0
SG D:CYS323 4.8 154.3 1.0
SG D:CYS293 4.8 146.9 1.0
CD2 D:PHE324 4.8 135.5 1.0
N D:PHE324 4.9 134.5 1.0
CA D:ARG302 4.9 137.2 1.0
SG D:CYS299 4.9 159.3 1.0
CB D:PHE324 5.0 137.0 1.0

Iron binding site 8 out of 8 in 8z1v

Go back to Iron Binding Sites List in 8z1v
Iron binding site 8 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Escherichia Coli Dppbcdf in the Resting State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:175.5
occ:1.00
FE4 D:SF4401 0.0 175.5 1.0
S1 D:SF4401 2.2 166.7 1.0
S2 D:SF4401 2.3 177.0 1.0
S3 D:SF4401 2.3 177.7 1.0
SG D:CYS323 2.4 154.3 1.0
FE3 D:SF4401 2.7 164.5 1.0
FE2 D:SF4401 2.7 172.0 1.0
FE1 D:SF4401 2.7 173.4 1.0
CB D:CYS323 3.4 144.3 1.0
CA D:CYS323 3.6 143.4 1.0
S4 D:SF4401 3.8 172.1 1.0
N D:PHE324 3.9 134.5 1.0
C D:CYS323 4.1 143.5 1.0
N D:ALA325 4.4 145.9 1.0
CG D:PRO256 4.6 130.6 1.0
CD D:PRO256 4.6 126.7 1.0
O D:ALA322 4.7 139.6 1.0
CB D:ALA325 4.8 149.3 1.0
NE2 D:HIS255 4.9 118.7 1.0
SG D:CYS293 4.9 146.9 1.0
N D:CYS323 4.9 141.3 1.0
SG D:CYS299 4.9 159.3 1.0
SG D:CYS306 4.9 167.5 1.0
CA D:PHE324 5.0 137.6 1.0

Reference:

P.Li, Y.Huang. The Structure of Abc Peptide Transporters Reveals the Additional Functional Roles of Novel Domains To Be Published.
Page generated: Sun Feb 9 07:21:11 2025

Last articles

Cl in 4OZ1
Cl in 4OZ0
Cl in 4OYX
Cl in 4OYR
Cl in 4OYW
Cl in 4OWE
Cl in 4OYV
Cl in 4OYS
Cl in 4OYO
Cl in 4OYP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy