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Iron in PDB 8z1w: Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas:
7.4.2.9;

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas (pdb code 8z1w). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas, PDB code: 8z1w:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8z1w

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Iron binding site 1 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:135.9
occ:1.00
 FE1 C:SF4401 0.0 135.9 1.0
SG C:CYS290 2.3 124.5 1.0
S4 C:SF4401 2.3 128.3 1.0
S3 C:SF4401 2.3 137.5 1.0
S2 C:SF4401 2.3 113.5 1.0
FE2 C:SF4401 2.7 112.3 1.0
FE4 C:SF4401 2.7 125.6 1.0
FE3 C:SF4401 2.7 137.2 1.0
CB C:CYS290 3.1 114.6 1.0
S1 C:SF4401 3.8 132.2 1.0
CG C:PRO248 4.3 96.9 1.0
CA C:CYS290 4.5 105.6 1.0
N C:ALA293 4.6 107.5 1.0
CB C:PRO248 4.6 91.6 1.0
C C:TYR292 4.7 106.7 1.0
CD2 C:LEU286 4.8 99.0 1.0
SG C:CYS315 4.8 111.0 1.0
CA C:ALA293 4.8 108.6 1.0
CB C:TYR292 4.8 110.1 1.0
SG C:CYS284 4.8 110.5 1.0
SG C:CYS297 4.9 132.7 1.0

Iron binding site 2 out of 8 in 8z1w

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Iron binding site 2 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:112.3
occ:1.00
 FE2 C:SF4401 0.0 112.3 1.0
S4 C:SF4401 2.2 128.3 1.0
S1 C:SF4401 2.2 132.2 1.0
S3 C:SF4401 2.3 137.5 1.0
SG C:CYS284 2.4 110.5 1.0
FE1 C:SF4401 2.7 135.9 1.0
FE3 C:SF4401 2.7 137.2 1.0
FE4 C:SF4401 2.7 125.6 1.0
CB C:CYS284 3.2 98.2 1.0
S2 C:SF4401 3.8 113.5 1.0
CB C:LEU286 4.5 99.2 1.0
CA C:CYS284 4.6 95.5 1.0
CB C:CYS297 4.7 111.5 1.0
SG C:CYS297 4.7 132.7 1.0
SG C:CYS290 4.7 124.5 1.0
SG C:CYS315 4.9 111.0 1.0
CB C:CYS290 4.9 114.6 1.0
CG C:PRO302 4.9 110.0 1.0
O C:LYS314 5.0 113.9 1.0

Iron binding site 3 out of 8 in 8z1w

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Iron binding site 3 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:137.2
occ:1.00
 FE3 C:SF4401 0.0 137.2 1.0
S2 C:SF4401 2.2 113.5 1.0
S1 C:SF4401 2.3 132.2 1.0
S4 C:SF4401 2.3 128.3 1.0
SG C:CYS315 2.4 111.0 1.0
FE4 C:SF4401 2.7 125.6 1.0
FE2 C:SF4401 2.7 112.3 1.0
FE1 C:SF4401 2.7 135.9 1.0
CB C:CYS315 3.5 102.8 1.0
CA C:CYS315 3.8 95.7 1.0
S3 C:SF4401 3.9 137.5 1.0
N C:HIS316 3.9 96.2 1.0
C C:CYS315 4.3 98.6 1.0
CG C:PRO248 4.4 96.9 1.0
CD C:PRO248 4.5 106.4 1.0
SG C:CYS290 4.7 124.5 1.0
N C:TYR317 4.7 116.2 1.0
SG C:CYS284 4.8 110.5 1.0
SG C:CYS297 4.8 132.7 1.0
O C:LYS314 4.9 113.9 1.0
NE2 C:HIS247 4.9 101.6 1.0
CA C:HIS316 5.0 100.7 1.0

Iron binding site 4 out of 8 in 8z1w

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Iron binding site 4 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:125.6
occ:1.00
 FE4 C:SF4401 0.0 125.6 1.0
S2 C:SF4401 2.2 113.5 1.0
S1 C:SF4401 2.3 132.2 1.0
S3 C:SF4401 2.3 137.5 1.0
SG C:CYS297 2.4 132.7 1.0
FE3 C:SF4401 2.7 137.2 1.0
FE1 C:SF4401 2.7 135.9 1.0
FE2 C:SF4401 2.7 112.3 1.0
CB C:CYS297 3.2 111.5 1.0
S4 C:SF4401 3.8 128.3 1.0
CA C:CYS297 4.4 110.1 1.0
ND1 C:HIS316 4.5 106.0 1.0
CA C:ALA293 4.6 108.6 1.0
CD2 C:TYR317 4.7 113.1 1.0
SG C:CYS290 4.7 124.5 1.0
O C:TYR292 4.8 109.7 1.0
CB C:CYS284 4.8 98.2 1.0
SG C:CYS284 4.8 110.5 1.0
SG C:CYS315 4.8 111.0 1.0
CE2 C:TYR317 4.8 114.2 1.0
CB C:HIS316 4.9 101.5 1.0
N C:THR294 5.0 116.9 1.0

Iron binding site 5 out of 8 in 8z1w

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Iron binding site 5 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:134.7
occ:1.00
 FE1 D:SF4401 0.0 134.7 1.0
S4 D:SF4401 2.3 139.9 1.0
S3 D:SF4401 2.3 134.9 1.0
S2 D:SF4401 2.3 141.5 1.0
SG D:CYS293 2.4 115.7 1.0
FE4 D:SF4401 2.7 142.7 1.0
FE2 D:SF4401 2.7 128.7 1.0
FE3 D:SF4401 2.7 140.0 1.0
CB D:CYS293 3.4 113.2 1.0
S1 D:SF4401 3.8 127.9 1.0
CB D:PHE295 4.5 100.8 1.0
SG D:CYS306 4.8 144.5 1.0
CA D:CYS293 4.8 107.8 1.0
CE1 D:HIS255 4.8 97.0 1.0
SG D:CYS323 4.8 126.4 1.0
CB D:CYS306 4.9 126.6 1.0
N D:ASN296 4.9 116.3 1.0
SG D:CYS299 5.0 133.5 1.0

Iron binding site 6 out of 8 in 8z1w

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Iron binding site 6 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:128.7
occ:1.00
 FE2 D:SF4401 0.0 128.7 1.0
S4 D:SF4401 2.2 139.9 1.0
S1 D:SF4401 2.3 127.9 1.0
S3 D:SF4401 2.3 134.9 1.0
SG D:CYS306 2.3 144.5 1.0
FE3 D:SF4401 2.7 140.0 1.0
FE1 D:SF4401 2.7 134.7 1.0
FE4 D:SF4401 2.7 142.7 1.0
CB D:CYS306 3.1 126.6 1.0
S2 D:SF4401 3.8 141.5 1.0
CA D:CYS306 4.2 124.1 1.0
SG D:CYS293 4.6 115.7 1.0
CB D:CYS293 4.7 113.2 1.0
O D:ARG301 4.9 126.5 1.0
SG D:CYS299 4.9 133.5 1.0
CA D:ARG302 4.9 129.7 1.0
SG D:CYS323 5.0 126.4 1.0
CD2 D:PHE324 5.0 121.6 1.0

Iron binding site 7 out of 8 in 8z1w

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Iron binding site 7 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:140.0
occ:1.00
 FE3 D:SF4401 0.0 140.0 1.0
S1 D:SF4401 2.2 127.9 1.0
S2 D:SF4401 2.3 141.5 1.0
S4 D:SF4401 2.3 139.9 1.0
SG D:CYS323 2.4 126.4 1.0
FE4 D:SF4401 2.7 142.7 1.0
FE2 D:SF4401 2.7 128.7 1.0
FE1 D:SF4401 2.7 134.7 1.0
CB D:CYS323 3.7 116.7 1.0
S3 D:SF4401 3.8 134.9 1.0
CA D:CYS323 3.9 113.3 1.0
N D:PHE324 4.0 124.3 1.0
N D:ALA325 4.3 126.0 1.0
C D:CYS323 4.3 119.6 1.0
CB D:ALA325 4.5 125.9 1.0
CG D:PRO256 4.7 105.5 1.0
SG D:CYS306 4.7 144.5 1.0
CD D:PRO256 4.8 110.8 1.0
SG D:CYS299 4.8 133.5 1.0
CE1 D:HIS255 4.9 97.0 1.0
SG D:CYS293 5.0 115.7 1.0
CA D:PHE324 5.0 125.6 1.0

Iron binding site 8 out of 8 in 8z1w

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Iron binding site 8 out of 8 in the Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:142.7
occ:1.00
 FE4 D:SF4401 0.0 142.7 1.0
S2 D:SF4401 2.2 141.5 1.0
S3 D:SF4401 2.3 134.9 1.0
S1 D:SF4401 2.3 127.9 1.0
SG D:CYS299 2.4 133.5 1.0
FE3 D:SF4401 2.7 140.0 1.0
FE1 D:SF4401 2.7 134.7 1.0
FE2 D:SF4401 2.7 128.7 1.0
CB D:CYS299 3.3 112.9 1.0
S4 D:SF4401 3.8 139.9 1.0
CD2 D:PHE295 4.4 99.9 1.0
CG D:PRO256 4.6 105.5 1.0
CA D:CYS299 4.7 109.2 1.0
C D:ARG301 4.7 121.8 1.0
CB D:ARG301 4.8 123.3 1.0
N D:ARG302 4.8 125.8 1.0
SG D:CYS323 4.8 126.4 1.0
SG D:CYS306 4.8 144.5 1.0
CB D:PRO256 4.9 101.5 1.0
O D:ARG301 4.9 126.5 1.0
SG D:CYS293 5.0 115.7 1.0

Reference:

P.Li, Y.Huang. Cryo-Em Structure of Escherichia Coli Dppbcdf Complex Bound to Atpgammas To Be Published.
Page generated: Sun Feb 9 07:21:10 2025

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