Iron in PDB 8z82: Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila

The structure of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila also contains other interesting chemical elements:

Magnesium

(Mg)

46 atoms

The binding sites of Iron atom in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila (pdb code 8z82). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 9 binding sites of Iron where determined in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila, PDB code: 8z82:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Iron binding site 1 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:62.3 occ:1.00 FE C:HEC401 0.0 62.3 1.0 NE2 C:HIS112 1.8 45.2 1.0 ND C:HEC401 1.9 44.0 1.0 NA C:HEC401 2.0 49.7 1.0 NC C:HEC401 2.1 40.9 1.0 NB C:HEC401 2.1 41.4 1.0 SD C:MET95 2.6 35.6 1.0 CD2 C:HIS112 2.6 40.5 1.0 C4D C:HEC401 2.9 38.5 1.0 C1D C:HEC401 2.9 39.4 1.0 CE1 C:HIS112 2.9 41.9 1.0 C1A C:HEC401 3.0 41.5 1.0 C4C C:HEC401 3.0 38.5 1.0 C4A C:HEC401 3.0 42.4 1.0 C1B C:HEC401 3.1 43.4 1.0 C4B C:HEC401 3.1 41.8 1.0 C1C C:HEC401 3.1 40.9 1.0 CHA C:HEC401 3.3 38.7 1.0 CHD C:HEC401 3.4 41.1 1.0 CHB C:HEC401 3.5 40.4 1.0 CHC C:HEC401 3.5 44.6 1.0 CE C:MET95 3.8 39.7 1.0 CG C:MET95 3.8 38.9 1.0 CG C:HIS112 3.8 34.3 1.0 ND1 C:HIS112 3.9 34.3 1.0 C3D C:HEC401 4.1 43.4 1.0 C2D C:HEC401 4.1 42.9 1.0 C2A C:HEC401 4.2 40.5 1.0 C3A C:HEC401 4.2 40.2 1.0 C3C C:HEC401 4.3 37.1 1.0 C2C C:HEC401 4.3 38.8 1.0 C2B C:HEC401 4.3 44.2 1.0 C3B C:HEC401 4.3 46.5 1.0 CB C:MET95 4.4 36.2 1.0 CD2 C:PHE117 4.9 49.0 1.0

Iron binding site 2 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:49.6 occ:1.00 FE C:HEC402 0.0 49.6 1.0 ND C:HEC402 1.9 38.0 1.0 NA C:HEC402 2.0 36.2 1.0 NC C:HEC402 2.1 35.2 1.0 NB C:HEC402 2.1 33.1 1.0 NE2 C:HIS157 2.4 10.5 1.0 SD C:MET131 2.7 33.7 1.0 C4D C:HEC402 2.9 28.1 1.0 C1D C:HEC402 2.9 27.9 1.0 C1A C:HEC402 3.0 29.7 1.0 C4C C:HEC402 3.0 27.8 1.0 C4A C:HEC402 3.1 34.0 1.0 C4B C:HEC402 3.1 30.1 1.0 C1B C:HEC402 3.1 31.2 1.0 C1C C:HEC402 3.1 29.7 1.0 CG C:MET131 3.3 29.9 1.0 CHA C:HEC402 3.3 24.4 1.0 CD2 C:HIS157 3.3 21.2 1.0 CE1 C:HIS157 3.4 24.5 1.0 CHD C:HEC402 3.4 29.4 1.0 CE C:MET131 3.4 28.6 1.0 CHB C:HEC402 3.5 32.5 1.0 CHC C:HEC402 3.5 30.7 1.0 C3D C:HEC402 4.1 27.8 1.0 C2D C:HEC402 4.1 28.2 1.0 C2A C:HEC402 4.2 34.0 1.0 CB C:MET131 4.2 26.5 1.0 C3A C:HEC402 4.2 30.7 1.0 C3C C:HEC402 4.3 30.0 1.0 C2C C:HEC402 4.3 29.7 1.0 C2B C:HEC402 4.3 34.6 1.0 C3B C:HEC402 4.3 33.5 1.0 ND1 C:HIS157 4.5 32.9 1.0 CG C:HIS157 4.5 27.6 1.0

Iron binding site 3 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:39.0 occ:1.00 FE C:HEC403 0.0 39.0 1.0 ND C:HEC403 1.9 22.3 1.0 NA C:HEC403 2.0 28.4 1.0 NC C:HEC403 2.1 25.0 1.0 NB C:HEC403 2.1 22.4 1.0 NE2 C:HIS256 2.2 16.8 1.0 SD C:MET241 2.7 23.7 1.0 C4D C:HEC403 2.9 19.1 1.0 C1D C:HEC403 2.9 11.9 1.0 C1A C:HEC403 3.0 18.9 1.0 CD2 C:HIS256 3.0 3.0 1.0 C4C C:HEC403 3.0 13.9 1.0 C4A C:HEC403 3.0 16.8 1.0 C1B C:HEC403 3.1 20.0 1.0 C4B C:HEC403 3.1 14.0 1.0 C1C C:HEC403 3.1 23.2 1.0 CHA C:HEC403 3.3 17.5 1.0 CE1 C:HIS256 3.3 25.4 1.0 CG C:MET241 3.3 19.8 1.0 CHD C:HEC403 3.4 14.9 1.0 CE C:MET241 3.4 25.3 1.0 CHB C:HEC403 3.5 17.9 1.0 CHC C:HEC403 3.5 9.8 1.0 C3D C:HEC403 4.1 26.2 1.0 C2D C:HEC403 4.1 18.3 1.0 C2A C:HEC403 4.2 19.8 1.0 CG C:HIS256 4.2 15.3 1.0 CB C:MET241 4.2 11.1 1.0 C3A C:HEC403 4.2 22.7 1.0 C3C C:HEC403 4.3 23.3 1.0 C2C C:HEC403 4.3 15.8 1.0 C2B C:HEC403 4.3 19.5 1.0 ND1 C:HIS256 4.3 25.1 1.0 C3B C:HEC403 4.3 27.9 1.0

Iron binding site 4 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:42.5 occ:1.00 FE C:HEC404 0.0 42.5 1.0 NE2 C:HIS316 1.8 18.4 1.0 ND C:HEC404 1.9 30.7 1.0 NA C:HEC404 2.0 25.5 1.0 NC C:HEC404 2.1 26.5 1.0 NB C:HEC404 2.1 28.2 1.0 NE2 C:HIS145 2.3 27.7 1.0 CE1 C:HIS316 2.6 19.0 1.0 C4D C:HEC404 2.9 22.9 1.0 C1D C:HEC404 2.9 26.3 1.0 C1A C:HEC404 3.0 22.0 1.0 C4C C:HEC404 3.0 21.0 1.0 C4A C:HEC404 3.0 21.1 1.0 CD2 C:HIS316 3.0 17.3 1.0 C1B C:HEC404 3.1 25.5 1.0 C4B C:HEC404 3.1 19.7 1.0 C1C C:HEC404 3.1 22.1 1.0 CD2 C:HIS145 3.2 19.4 1.0 CE1 C:HIS145 3.3 28.9 1.0 CHA C:HEC404 3.3 19.9 1.0 CHD C:HEC404 3.4 22.6 1.0 CHB C:HEC404 3.5 23.9 1.0 CHC C:HEC404 3.5 22.4 1.0 ND1 C:HIS316 3.8 16.0 1.0 CG C:HIS316 4.0 14.2 1.0 C3D C:HEC404 4.1 22.1 1.0 C2D C:HEC404 4.1 27.6 1.0 C2A C:HEC404 4.2 22.8 1.0 C3A C:HEC404 4.2 22.6 1.0 C3C C:HEC404 4.3 31.9 1.0 C2C C:HEC404 4.3 25.6 1.0 C2B C:HEC404 4.3 26.8 1.0 C3B C:HEC404 4.3 24.2 1.0 CG C:HIS145 4.4 20.1 1.0 ND1 C:HIS145 4.4 27.4 1.0

Iron binding site 5 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe401 b:48.7 occ:1.00 NE2 L:HIS190 2.0 30.9 1.0 OE2 M:GLU234 2.0 39.2 1.0 OE1 M:GLU234 2.1 41.9 1.0 NE2 M:HIS219 2.1 26.8 1.0 NE2 L:HIS230 2.2 28.0 1.0 NE2 M:HIS266 2.2 27.3 1.0 CD M:GLU234 2.3 31.1 1.0 CE1 L:HIS190 2.6 26.5 1.0 CD2 M:HIS219 3.0 15.7 1.0 CE1 M:HIS266 3.1 23.9 1.0 CD2 L:HIS230 3.2 15.7 1.0 CE1 M:HIS219 3.2 25.5 1.0 CE1 L:HIS230 3.2 22.0 1.0 CD2 L:HIS190 3.2 21.4 1.0 CD2 M:HIS266 3.3 19.6 1.0 CG M:GLU234 3.8 28.3 1.0 ND1 L:HIS190 3.9 24.6 1.0 CG L:HIS190 4.2 21.6 1.0 CG M:HIS219 4.2 18.5 1.0 ND1 M:HIS266 4.2 18.3 1.0 ND1 M:HIS219 4.3 19.2 1.0 ND1 L:HIS230 4.3 21.2 1.0 CG L:HIS230 4.3 19.8 1.0 CG M:HIS266 4.4 18.7 1.0 CG1 M:ILE223 4.5 23.8 1.0 CB M:GLU234 4.7 32.3 1.0 CG1 L:ILE194 4.7 26.6 1.0 CD1 M:ILE223 5.0 21.0 1.0

Iron binding site 6 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe201 b:32.0 occ:1.00 FE1 a:SF4201 0.0 32.0 1.0 S4 a:SF4201 2.3 42.5 1.0 S3 a:SF4201 2.3 42.8 1.0 S2 a:SF4201 2.3 31.9 1.0 SG a:CYS82 2.6 26.4 1.0 FE4 a:SF4201 2.7 26.8 1.0 FE2 a:SF4201 2.7 45.7 1.0 FE3 a:SF4201 2.7 27.5 1.0 CB a:CYS82 3.4 34.5 1.0 CA a:CYS82 3.6 20.0 1.0 S1 a:SF4201 3.9 49.9 1.0 CB a:CYS85 4.0 29.9 1.0 SG a:CYS85 4.2 38.6 1.0 CG2 a:VAL111 4.2 29.4 1.0 O a:CYS82 4.5 40.8 1.0 C a:CYS82 4.6 29.0 1.0 N a:CYS82 4.6 26.8 1.0 CB a:VAL111 4.7 34.9 1.0 CD1 a:TYR88 4.8 39.5 1.0 ND2 a:ASN41 4.9 40.6 1.0 SG a:CYS100 4.9 30.9 1.0

Iron binding site 7 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe201 b:45.7 occ:1.00 FE2 a:SF4201 0.0 45.7 1.0 SG a:CYS85 1.9 38.6 1.0 S3 a:SF4201 2.3 42.8 1.0 S4 a:SF4201 2.3 42.5 1.0 S1 a:SF4201 2.3 49.9 1.0 FE4 a:SF4201 2.7 26.8 1.0 FE1 a:SF4201 2.7 32.0 1.0 FE3 a:SF4201 2.7 27.5 1.0 CB a:CYS85 3.0 29.9 1.0 S2 a:SF4201 3.9 31.9 1.0 CB a:LEU87 4.0 21.2 1.0 CA a:TRP120 4.3 33.2 1.0 CA a:CYS85 4.4 25.3 1.0 CD1 a:LEU87 4.4 27.8 1.0 N a:LEU87 4.5 32.4 1.0 O a:ALA119 4.5 24.3 1.0 CD1 a:TRP120 4.6 29.5 1.0 CA a:LEU87 4.6 27.7 1.0 C a:LEU87 4.6 28.0 1.0 CG a:LEU87 4.7 15.9 1.0 N a:TRP120 4.7 25.2 1.0 SG a:CYS117 4.7 36.5 1.0 C a:ALA119 4.8 14.2 1.0 SG a:CYS100 4.9 30.9 1.0 O a:LEU87 4.9 36.7 1.0 CB a:TRP120 4.9 30.0 1.0 C a:CYS85 4.9 19.2 1.0 N a:TYR88 5.0 30.2 1.0

Iron binding site 8 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe201 b:27.5 occ:1.00 FE3 a:SF4201 0.0 27.5 1.0 S2 a:SF4201 2.3 31.9 1.0 S1 a:SF4201 2.3 49.9 1.0 S4 a:SF4201 2.3 42.5 1.0 SG a:CYS100 2.5 30.9 1.0 FE1 a:SF4201 2.7 32.0 1.0 FE4 a:SF4201 2.7 26.8 1.0 FE2 a:SF4201 2.7 45.7 1.0 CB a:CYS100 3.4 17.6 1.0 S3 a:SF4201 3.9 42.8 1.0 SG a:CYS117 4.3 36.5 1.0 CA a:CYS100 4.4 19.9 1.0 CB a:ALA102 4.4 7.7 1.0 SG a:CYS85 4.5 38.6 1.0 CG1 a:VAL111 4.6 35.8 1.0 CB a:LEU87 4.7 21.2 1.0 CG2 a:VAL111 4.7 29.4 1.0 O a:LEU87 4.8 36.7 1.0 N a:ALA102 4.8 12.8 1.0 CE2 a:PHE103 4.9 28.6 1.0 C a:CYS100 4.9 25.9 1.0 N a:ALA101 5.0 28.8 1.0

Iron binding site 9 out of 9 in the Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Photosynthetic LH1-Rc-Hipip Complex From the Purple Bacterium Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe201 b:26.8 occ:1.00 FE4 a:SF4201 0.0 26.8 1.0 S3 a:SF4201 2.3 42.8 1.0 S2 a:SF4201 2.3 31.9 1.0 S1 a:SF4201 2.3 49.9 1.0 SG a:CYS117 2.4 36.5 1.0 FE1 a:SF4201 2.7 32.0 1.0 FE2 a:SF4201 2.7 45.7 1.0 FE3 a:SF4201 2.7 27.5 1.0 CB a:CYS117 3.5 25.3 1.0 N a:CYS117 3.6 35.4 1.0 S4 a:SF4201 3.9 42.5 1.0 CA a:CYS117 3.9 32.0 1.0 O a:CYS117 4.0 43.4 1.0 C a:CYS117 4.3 31.0 1.0 C a:TRP116 4.4 28.1 1.0 N a:TRP120 4.4 25.2 1.0 SG a:CYS85 4.5 38.6 1.0 ND2 a:ASN41 4.6 40.6 1.0 CA a:TRP120 4.6 33.2 1.0 C a:ALA119 4.6 14.2 1.0 SG a:CYS82 4.7 26.4 1.0 CB a:ALA119 4.8 22.5 0.7 CA a:TRP116 4.9 23.7 1.0 CB a:TRP120 4.9 30.0 1.0 O a:ALA119 5.0 24.3 1.0

K.Tani, R.Kanno, K.V.P.Nagashima, M.Kawakami, N.Hiwatashi, K.Nakata, S.Nagashima, K.Inoue, S.Takaichi, E.R.Purba, M.Hall, L.J.Yu, M.T.Madigan, A.Mizoguchi, B.M.Humbel, Y.Kimura, Z.Y.Wang-Otomo. A Native LH1-Rc-Hipip Supercomplex From An Extremophilic Phototroph. Commun Biol V. 8 42 2025.
ISSN: ESSN 2399-3642
PubMed: 39799244
DOI: 10.1038/S42003-024-07421-W