Iron in PDB 9bpb: Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae

All present enzymatic activity of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae:
7.1.1.8; 7.1.1.9;

The structure of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Magnesium	(Mg)	2 atoms
Calcium	(Ca)	2 atoms
Copper	(Cu)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae (pdb code 9bpb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae, PDB code: 9bpb:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe405 b:20.0 occ:1.00 FE C:HEM405 0.0 20.0 1.0 ND C:HEM405 1.9 20.0 1.0 NA C:HEM405 2.0 20.0 1.0 NC C:HEM405 2.1 20.0 1.0 NB C:HEM405 2.1 20.0 1.0 NE2 C:HIS197 2.5 26.0 1.0 NE2 C:HIS96 2.6 25.1 1.0 C4D C:HEM405 2.8 20.0 1.0 C1D C:HEM405 2.9 20.0 1.0 C1A C:HEM405 2.9 20.0 1.0 C4C C:HEM405 3.0 20.0 1.0 C4A C:HEM405 3.0 20.0 1.0 C4B C:HEM405 3.1 20.0 1.0 C1B C:HEM405 3.1 20.0 1.0 C1C C:HEM405 3.1 20.0 1.0 CD2 C:HIS96 3.2 22.5 1.0 CHA C:HEM405 3.3 20.0 1.0 CHD C:HEM405 3.4 20.0 1.0 CD2 C:HIS197 3.4 21.7 1.0 CE1 C:HIS197 3.4 30.3 1.0 CHB C:HEM405 3.5 20.0 1.0 CHC C:HEM405 3.5 20.0 1.0 CE1 C:HIS96 3.8 26.9 1.0 C3D C:HEM405 4.1 20.0 1.0 C2D C:HEM405 4.1 20.0 1.0 C2A C:HEM405 4.1 20.0 1.0 C3A C:HEM405 4.2 20.0 1.0 C3C C:HEM405 4.3 20.0 1.0 HHA C:HEM405 4.3 20.0 1.0 C2C C:HEM405 4.3 20.0 1.0 C2B C:HEM405 4.3 20.0 1.0 HHD C:HEM405 4.3 20.0 1.0 C3B C:HEM405 4.3 20.0 1.0 CG C:HIS96 4.4 26.2 1.0 ND1 C:HIS197 4.4 26.9 1.0 HHB C:HEM405 4.5 20.0 1.0 HHC C:HEM405 4.5 20.0 1.0 CG C:HIS197 4.5 19.7 1.0 ND1 C:HIS96 4.7 27.6 1.0

Iron binding site 2 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe407 b:20.0 occ:1.00 FE C:HEM407 0.0 20.0 1.0 ND C:HEM407 1.9 20.0 1.0 NA C:HEM407 2.0 20.0 1.0 NC C:HEM407 2.1 20.0 1.0 NB C:HEM407 2.1 20.0 1.0 NE2 C:HIS183 2.4 16.5 1.0 NE2 C:HIS82 2.5 31.3 1.0 C4D C:HEM407 2.9 20.0 1.0 C1D C:HEM407 2.9 20.0 1.0 C1A C:HEM407 3.0 20.0 1.0 C4C C:HEM407 3.0 20.0 1.0 C4A C:HEM407 3.0 20.0 1.0 C4B C:HEM407 3.1 20.0 1.0 C1B C:HEM407 3.1 20.0 1.0 CE1 C:HIS82 3.1 27.1 1.0 C1C C:HEM407 3.1 20.0 1.0 CHA C:HEM407 3.3 20.0 1.0 CD2 C:HIS183 3.3 7.5 1.0 CHD C:HEM407 3.3 20.0 1.0 CE1 C:HIS183 3.4 24.6 1.0 CHB C:HEM407 3.5 20.0 1.0 CHC C:HEM407 3.5 20.0 1.0 CD2 C:HIS82 3.6 22.8 1.0 C3D C:HEM407 4.1 20.0 1.0 C2D C:HEM407 4.1 20.0 1.0 C2A C:HEM407 4.2 20.0 1.0 C3A C:HEM407 4.2 20.0 1.0 C3C C:HEM407 4.2 20.0 1.0 HHA C:HEM407 4.3 20.0 1.0 C2C C:HEM407 4.3 20.0 1.0 C2B C:HEM407 4.3 20.0 1.0 HHD C:HEM407 4.3 20.0 1.0 C3B C:HEM407 4.3 20.0 1.0 ND1 C:HIS82 4.3 21.3 1.0 HHB C:HEM407 4.4 20.0 1.0 ND1 C:HIS183 4.5 23.0 1.0 HHC C:HEM407 4.5 20.0 1.0 CG C:HIS183 4.5 12.0 1.0 CG C:HIS82 4.6 16.8 1.0

Iron binding site 3 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe402 b:20.0 occ:1.00 FE D:HEC402 0.0 20.0 1.0 NA D:HEC402 2.0 20.0 1.0 NB D:HEC402 2.0 20.0 1.0 ND D:HEC402 2.0 20.0 1.0 NC D:HEC402 2.0 20.0 1.0 NE2 D:HIS105 2.5 45.3 1.0 SD D:MET225 3.0 63.0 1.0 C4A D:HEC402 3.0 20.0 1.0 C1B D:HEC402 3.0 20.0 1.0 CE D:MET225 3.0 58.5 1.0 C1A D:HEC402 3.0 20.0 1.0 C4C D:HEC402 3.0 20.0 1.0 C4B D:HEC402 3.0 20.0 1.0 C1D D:HEC402 3.0 20.0 1.0 C4D D:HEC402 3.1 20.0 1.0 C1C D:HEC402 3.1 20.0 1.0 CE1 D:HIS105 3.1 41.1 1.0 CD2 D:HIS105 3.3 47.2 1.0 CHB D:HEC402 3.4 20.0 1.0 CHD D:HEC402 3.4 20.0 1.0 CHA D:HEC402 3.4 20.0 1.0 CHC D:HEC402 3.5 20.0 1.0 CG D:MET225 4.0 54.9 1.0 ND1 D:HIS105 4.1 43.2 1.0 CG D:HIS105 4.2 42.5 1.0 C3A D:HEC402 4.2 20.0 1.0 C2B D:HEC402 4.2 20.0 1.0 C2A D:HEC402 4.2 20.0 1.0 C3B D:HEC402 4.2 20.0 1.0 C3C D:HEC402 4.2 20.0 1.0 C2D D:HEC402 4.3 20.0 1.0 C3D D:HEC402 4.3 20.0 1.0 C2C D:HEC402 4.3 20.0 1.0 HHB D:HEC402 4.4 20.0 1.0 HHD D:HEC402 4.4 20.0 1.0 HHA D:HEC402 4.5 20.0 1.0 HHC D:HEC402 4.5 20.0 1.0 CB D:MET225 4.7 54.5 1.0

Iron binding site 4 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:193.0 occ:1.00 FE1 E:FES301 0.0 193.0 1.0 S2 E:FES301 2.2 193.0 1.0 S1 E:FES301 2.2 193.0 1.0 FE2 E:FES301 3.1 193.0 1.0 CB E:CYS159 3.2 175.1 1.0 SG E:CYS178 3.4 183.7 1.0 SG E:CYS159 3.7 175.1 1.0 CB E:HIS161 3.9 182.0 1.0 CB E:CYS178 4.1 183.7 1.0 OH E:TYR185 4.1 186.5 1.0 N E:LEU162 4.3 175.8 1.0 CB E:CYS164 4.5 167.6 1.0 N E:CYS164 4.5 167.6 1.0 N E:HIS161 4.5 182.0 1.0 N E:GLY163 4.6 163.8 1.0 CA E:CYS159 4.6 175.1 1.0 CD1 E:LEU162 4.6 175.8 1.0 CA E:HIS161 4.7 182.0 1.0 OG E:SER183 4.7 188.9 1.0 C E:CYS159 4.9 175.1 1.0

Iron binding site 5 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:193.0 occ:1.00 FE2 E:FES301 0.0 193.0 1.0 S2 E:FES301 2.2 193.0 1.0 S1 E:FES301 2.2 193.0 1.0 CD1 E:LEU162 2.6 175.8 1.0 ND1 E:HIS181 2.8 185.3 1.0 FE1 E:FES301 3.1 193.0 1.0 CB E:CYS180 3.2 183.0 1.0 CG E:HIS181 3.6 185.3 1.0 CG E:LEU162 3.7 175.8 1.0 CB E:HIS181 3.7 185.3 1.0 CE1 E:HIS181 3.8 185.3 1.0 N E:HIS181 3.8 185.3 1.0 SG E:CYS178 3.9 183.7 1.0 CB E:LEU162 3.9 175.8 1.0 SG E:CYS164 4.0 167.6 1.0 C E:CYS180 4.1 183.0 1.0 CA E:CYS180 4.2 183.0 1.0 SG E:CYS180 4.3 183.0 1.0 CB E:CYS164 4.4 167.6 1.0 CD2 E:LEU162 4.4 175.8 1.0 CA E:HIS181 4.4 185.3 1.0 ND1 E:HIS161 4.5 182.0 1.0 N E:LEU162 4.5 175.8 1.0 CB E:HIS161 4.5 182.0 1.0 CD2 E:HIS181 4.8 185.3 1.0 CA E:LEU162 4.8 175.8 1.0 NE2 E:HIS181 4.8 185.3 1.0 O E:CYS180 4.8 183.0 1.0 CG E:HIS161 4.9 182.0 1.0 N E:CYS180 5.0 183.0 1.0

Iron binding site 6 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe601 b:20.0 occ:1.00 FE a:HEA601 0.0 20.0 1.0 NA a:HEA601 2.0 20.0 1.0 NC a:HEA601 2.1 20.0 1.0 NB a:HEA601 2.1 20.0 1.0 ND a:HEA601 2.1 20.0 1.0 NE2 a:HIS62 2.5 22.5 1.0 C1A a:HEA601 3.0 20.0 1.0 C4A a:HEA601 3.0 20.0 1.0 NE2 a:HIS378 3.1 19.3 1.0 C4C a:HEA601 3.1 20.0 1.0 C4B a:HEA601 3.1 20.0 1.0 C1C a:HEA601 3.1 20.0 1.0 C1B a:HEA601 3.1 20.0 1.0 C1D a:HEA601 3.1 20.0 1.0 C4D a:HEA601 3.1 20.0 1.0 CE1 a:HIS62 3.3 25.2 1.0 CHB a:HEA601 3.5 20.0 1.0 CHA a:HEA601 3.5 20.0 1.0 CHC a:HEA601 3.5 20.0 1.0 CHD a:HEA601 3.5 20.0 1.0 CD2 a:HIS62 3.5 27.5 1.0 CE1 a:HIS378 3.6 32.8 1.0 CD2 a:HIS378 4.0 20.2 1.0 C3A a:HEA601 4.3 20.0 1.0 C2A a:HEA601 4.3 20.0 1.0 C3C a:HEA601 4.4 20.0 1.0 C3B a:HEA601 4.5 20.0 1.0 C2B a:HEA601 4.5 20.0 1.0 HHB a:HEA601 4.5 20.0 1.0 HHA a:HEA601 4.5 20.0 1.0 C2D a:HEA601 4.5 20.0 1.0 C2C a:HEA601 4.5 20.0 1.0 C3D a:HEA601 4.5 20.0 1.0 HHC a:HEA601 4.5 20.0 1.0 HHD a:HEA601 4.5 20.0 1.0 ND1 a:HIS62 4.5 26.6 1.0 ND1 a:HIS378 4.6 38.3 1.0 CG a:HIS62 4.6 21.4 1.0 CG a:HIS378 4.8 16.8 1.0

Iron binding site 7 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe603 b:20.0 occ:1.00 FE a:HEA603 0.0 20.0 1.0 NA a:HEA603 2.0 20.0 1.0 NC a:HEA603 2.1 20.0 1.0 ND a:HEA603 2.1 20.0 1.0 NB a:HEA603 2.1 20.0 1.0 C1A a:HEA603 3.0 20.0 1.0 NE2 a:HIS376 3.0 23.4 1.0 C4A a:HEA603 3.0 20.0 1.0 C4C a:HEA603 3.1 20.0 1.0 C1C a:HEA603 3.1 20.0 1.0 C1B a:HEA603 3.1 20.0 1.0 C4D a:HEA603 3.1 20.0 1.0 C1D a:HEA603 3.1 20.0 1.0 C4B a:HEA603 3.1 20.0 1.0 CHA a:HEA603 3.5 20.0 1.0 CHC a:HEA603 3.5 20.0 1.0 CHB a:HEA603 3.5 20.0 1.0 CHD a:HEA603 3.5 20.0 1.0 CD2 a:HIS376 3.9 18.1 1.0 CE1 a:HIS376 4.0 31.1 1.0 C3A a:HEA603 4.2 20.0 1.0 C2A a:HEA603 4.2 20.0 1.0 C3C a:HEA603 4.4 20.0 1.0 HHA a:HEA603 4.4 20.0 1.0 C2B a:HEA603 4.4 20.0 1.0 C3D a:HEA603 4.5 20.0 1.0 C2C a:HEA603 4.5 20.0 1.0 C2D a:HEA603 4.5 20.0 1.0 C3B a:HEA603 4.5 20.0 1.0 HHB a:HEA603 4.5 20.0 1.0 HHC a:HEA603 4.5 20.0 1.0 HHD a:HEA603 4.5 20.0 1.0 CU a:CU602 4.7 20.0 1.0 CG2 a:VAL244 5.0 21.1 1.0

Iron binding site 8 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe404 b:20.0 occ:1.00 FE M:HEM404 0.0 20.0 1.0 ND M:HEM404 1.9 20.0 1.0 NA M:HEM404 2.0 20.0 1.0 NC M:HEM404 2.1 20.0 1.0 NB M:HEM404 2.1 20.0 1.0 NE2 M:HIS197 2.5 26.0 1.0 NE2 M:HIS96 2.6 25.1 1.0 C4D M:HEM404 2.8 20.0 1.0 C1D M:HEM404 2.9 20.0 1.0 C1A M:HEM404 2.9 20.0 1.0 C4C M:HEM404 3.0 20.0 1.0 C4A M:HEM404 3.0 20.0 1.0 C4B M:HEM404 3.1 20.0 1.0 C1B M:HEM404 3.1 20.0 1.0 C1C M:HEM404 3.1 20.0 1.0 CD2 M:HIS96 3.2 22.5 1.0 CHA M:HEM404 3.3 20.0 1.0 CHD M:HEM404 3.4 20.0 1.0 CD2 M:HIS197 3.4 21.7 1.0 CE1 M:HIS197 3.4 30.3 1.0 CHB M:HEM404 3.5 20.0 1.0 CHC M:HEM404 3.5 20.0 1.0 CE1 M:HIS96 3.8 26.9 1.0 C3D M:HEM404 4.1 20.0 1.0 C2D M:HEM404 4.1 20.0 1.0 C2A M:HEM404 4.1 20.0 1.0 C3A M:HEM404 4.2 20.0 1.0 C3C M:HEM404 4.3 20.0 1.0 HHA M:HEM404 4.3 20.0 1.0 C2C M:HEM404 4.3 20.0 1.0 C2B M:HEM404 4.3 20.0 1.0 HHD M:HEM404 4.3 20.0 1.0 C3B M:HEM404 4.3 20.0 1.0 CG M:HIS96 4.4 26.2 1.0 ND1 M:HIS197 4.4 26.9 1.0 HHB M:HEM404 4.5 20.0 1.0 HHC M:HEM404 4.5 20.0 1.0 CG M:HIS197 4.5 19.7 1.0 ND1 M:HIS96 4.7 27.6 1.0

Iron binding site 9 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe406 b:20.0 occ:1.00 FE M:HEM406 0.0 20.0 1.0 ND M:HEM406 1.9 20.0 1.0 NA M:HEM406 2.0 20.0 1.0 NC M:HEM406 2.1 20.0 1.0 NB M:HEM406 2.1 20.0 1.0 NE2 M:HIS183 2.4 16.5 1.0 NE2 M:HIS82 2.5 31.3 1.0 C4D M:HEM406 2.9 20.0 1.0 C1D M:HEM406 2.9 20.0 1.0 C1A M:HEM406 3.0 20.0 1.0 C4C M:HEM406 3.0 20.0 1.0 C4A M:HEM406 3.0 20.0 1.0 C4B M:HEM406 3.1 20.0 1.0 C1B M:HEM406 3.1 20.0 1.0 CE1 M:HIS82 3.1 27.1 1.0 C1C M:HEM406 3.1 20.0 1.0 CHA M:HEM406 3.3 20.0 1.0 CD2 M:HIS183 3.3 7.5 1.0 CHD M:HEM406 3.3 20.0 1.0 CE1 M:HIS183 3.4 24.6 1.0 CHB M:HEM406 3.5 20.0 1.0 CHC M:HEM406 3.5 20.0 1.0 CD2 M:HIS82 3.6 22.8 1.0 C3D M:HEM406 4.1 20.0 1.0 C2D M:HEM406 4.1 20.0 1.0 C2A M:HEM406 4.2 20.0 1.0 C3A M:HEM406 4.2 20.0 1.0 C3C M:HEM406 4.2 20.0 1.0 HHA M:HEM406 4.3 20.0 1.0 C2C M:HEM406 4.3 20.0 1.0 C2B M:HEM406 4.3 20.0 1.0 HHD M:HEM406 4.3 20.0 1.0 C3B M:HEM406 4.3 20.0 1.0 ND1 M:HIS82 4.3 21.3 1.0 HHB M:HEM406 4.4 20.0 1.0 ND1 M:HIS183 4.5 23.0 1.0 HHC M:HEM406 4.5 20.0 1.0 CG M:HIS183 4.5 12.0 1.0 CG M:HIS82 4.6 16.8 1.0

Iron binding site 10 out of 14 in the Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Tethered Respiratory III2IV2 Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe402 b:20.0 occ:1.00 FE N:HEC402 0.0 20.0 1.0 NA N:HEC402 2.0 20.0 1.0 NB N:HEC402 2.0 20.0 1.0 ND N:HEC402 2.0 20.0 1.0 NC N:HEC402 2.0 20.0 1.0 NE2 N:HIS105 2.5 45.3 1.0 SD N:MET225 3.0 63.0 1.0 C4A N:HEC402 3.0 20.0 1.0 C1B N:HEC402 3.0 20.0 1.0 CE N:MET225 3.0 58.5 1.0 C1A N:HEC402 3.0 20.0 1.0 C4C N:HEC402 3.0 20.0 1.0 C4B N:HEC402 3.0 20.0 1.0 C1D N:HEC402 3.0 20.0 1.0 C4D N:HEC402 3.1 20.0 1.0 C1C N:HEC402 3.1 20.0 1.0 CE1 N:HIS105 3.1 41.1 1.0 CD2 N:HIS105 3.3 47.2 1.0 CHB N:HEC402 3.4 20.0 1.0 CHD N:HEC402 3.4 20.0 1.0 CHA N:HEC402 3.4 20.0 1.0 CHC N:HEC402 3.5 20.0 1.0 CG N:MET225 4.0 54.9 1.0 ND1 N:HIS105 4.1 43.2 1.0 CG N:HIS105 4.2 42.5 1.0 C3A N:HEC402 4.2 20.0 1.0 C2B N:HEC402 4.2 20.0 1.0 C2A N:HEC402 4.2 20.0 1.0 C3B N:HEC402 4.2 20.0 1.0 C3C N:HEC402 4.2 20.0 1.0 C2D N:HEC402 4.3 20.0 1.0 C3D N:HEC402 4.3 20.0 1.0 C2C N:HEC402 4.3 20.0 1.0 HHB N:HEC402 4.4 20.0 1.0 HHD N:HEC402 4.4 20.0 1.0 HHA N:HEC402 4.5 20.0 1.0 HHC N:HEC402 4.5 20.0 1.0 CB N:MET225 4.7 54.5 1.0

M.H.Eldeeb, Z.Cosner, J.Mays, A.Carlstrom, G.Rodriguez, J.Berndtsson, M.Ott, F.Fontanesi. Differential Substrate Utilization By Yeast Respiratory Supercomplexes To Be Published.