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Iron in PDB 9e7h: Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset

Enzymatic activity of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset

All present enzymatic activity of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset:
1.3.7.7;

Other elements in 9e7h:

The structure of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset also contains other interesting chemical elements:

Copper (Cu) 2 atoms
Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset (pdb code 9e7h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset, PDB code: 9e7h:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 9e7h

Go back to Iron Binding Sites List in 9e7h
Iron binding site 1 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:82.8
occ:1.00
 FE1 A:SF4501 0.0 82.8 1.0
SG A:CYS29 1.6 36.0 1.0
S2 A:SF4501 2.3 74.1 1.0
S4 A:SF4501 2.3 69.5 1.0
S3 A:SF4501 2.3 76.6 1.0
CB A:CYS29 2.5 28.9 1.0
FE2 A:SF4501 2.7 86.3 1.0
FE3 A:SF4501 2.7 76.4 1.0
FE4 A:SF4501 2.7 75.6 1.0
SG A:CYS115 3.6 23.2 1.0
S1 A:SF4501 3.8 87.4 1.0
CA A:CYS29 3.9 25.0 1.0
OD1 B:ASP36 4.1 46.1 1.0
CD2 A:LEU57 4.2 26.9 1.0
SG A:CYS54 4.2 8.1 1.0
N A:CYS29 4.3 32.0 1.0
N A:GLY148 4.3 35.3 1.0
O A:GLY146 4.7 27.7 1.0
C B:GLY35 4.7 61.7 1.0
C A:CYS29 4.8 24.0 1.0
CD2 A:LEU31 4.8 22.8 1.0
CA B:GLY35 4.8 57.5 1.0
O B:GLN34 4.8 62.6 1.0
CB A:LEU31 4.9 9.4 1.0
N B:ASP36 4.9 52.3 1.0
CA A:GLY148 4.9 33.0 1.0

Iron binding site 2 out of 8 in 9e7h

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Iron binding site 2 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:86.3
occ:1.00
 FE2 A:SF4501 0.0 86.3 1.0
OD1 B:ASP36 1.6 46.1 1.0
S3 A:SF4501 2.2 76.6 1.0
S1 A:SF4501 2.2 87.4 1.0
S4 A:SF4501 2.3 69.5 1.0
FE3 A:SF4501 2.7 76.4 1.0
FE1 A:SF4501 2.7 82.8 1.0
FE4 A:SF4501 2.7 75.6 1.0
CG B:ASP36 2.8 48.3 1.0
OD2 B:ASP36 3.5 49.4 1.0
SG A:CYS115 3.8 23.2 1.0
N B:ASP36 3.8 52.3 1.0
CA B:ASP36 3.8 45.2 1.0
S2 A:SF4501 3.8 74.1 1.0
CB B:ASP36 3.8 45.1 1.0
SG A:CYS29 4.0 36.0 1.0
SG A:CYS54 4.2 8.1 1.0
C B:GLY35 4.3 61.7 1.0
O B:PRO33 4.6 46.4 1.0
O B:GLY35 4.8 59.2 1.0
CB A:CYS115 4.8 34.4 1.0
OG1 B:THR96 4.9 64.7 1.0
CB A:CYS29 4.9 28.9 1.0
O B:GLN34 4.9 62.6 1.0

Iron binding site 3 out of 8 in 9e7h

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Iron binding site 3 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:76.4
occ:1.00
 FE3 A:SF4501 0.0 76.4 1.0
SG A:CYS54 1.7 8.1 1.0
S1 A:SF4501 2.3 87.4 1.0
S2 A:SF4501 2.3 74.1 1.0
S4 A:SF4501 2.3 69.5 1.0
FE2 A:SF4501 2.7 86.3 1.0
FE4 A:SF4501 2.7 75.6 1.0
FE1 A:SF4501 2.7 82.8 1.0
CB A:CYS54 3.1 15.0 1.0
CA A:CYS54 3.5 20.0 1.0
SG A:CYS115 3.8 23.2 1.0
S3 A:SF4501 3.8 76.6 1.0
N A:CYS54 4.0 32.4 1.0
CD A:PRO116 4.1 39.5 1.0
OD1 B:ASP36 4.1 46.1 1.0
SG A:CYS29 4.2 36.0 1.0
CD2 A:LEU31 4.2 22.8 1.0
N A:CYS115 4.6 37.6 1.0
CB A:CYS115 4.6 34.4 1.0
CB A:SER114 4.7 38.4 1.0
CG A:PRO116 4.7 30.5 1.0
OG A:SER114 4.8 29.5 1.0
C A:THR53 4.8 20.1 1.0
C A:CYS54 4.9 25.4 1.0

Iron binding site 4 out of 8 in 9e7h

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Iron binding site 4 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:75.6
occ:1.00
 FE4 A:SF4501 0.0 75.6 1.0
SG A:CYS115 1.2 23.2 1.0
S3 A:SF4501 2.2 76.6 1.0
S2 A:SF4501 2.3 74.1 1.0
S1 A:SF4501 2.3 87.4 1.0
CB A:CYS115 2.6 34.4 1.0
FE3 A:SF4501 2.7 76.4 1.0
FE2 A:SF4501 2.7 86.3 1.0
FE1 A:SF4501 2.7 82.8 1.0
N A:CYS115 3.5 37.6 1.0
CA A:CYS115 3.6 40.4 1.0
N A:GLY148 3.8 35.3 1.0
S4 A:SF4501 3.8 69.5 1.0
OD1 B:ASP36 4.0 46.1 1.0
SG A:CYS54 4.0 8.1 1.0
SG A:CYS29 4.2 36.0 1.0
CB A:CYS29 4.2 28.9 1.0
CD A:PRO116 4.2 39.5 1.0
CA A:SER147 4.5 32.3 1.0
CA A:GLY148 4.6 33.0 1.0
OG1 B:THR96 4.6 64.7 1.0
C A:CYS115 4.7 44.6 1.0
C A:SER147 4.7 34.8 1.0
C A:SER114 4.8 36.3 1.0
N A:PRO116 4.8 42.2 1.0
CB B:PRO33 4.9 36.4 1.0
CB A:SER147 5.0 35.4 1.0

Iron binding site 5 out of 8 in 9e7h

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Iron binding site 5 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:131.8
occ:1.00
 FE1 C:SF4501 0.0 131.8 1.0
SG C:CYS29 1.6 95.2 1.0
S3 C:SF4501 2.3 111.4 1.0
S4 C:SF4501 2.3 119.0 1.0
S2 C:SF4501 2.3 118.1 1.0
CB C:CYS29 2.4 90.5 1.0
FE2 C:SF4501 2.7 124.1 1.0
FE3 C:SF4501 2.7 129.4 1.0
FE4 C:SF4501 2.7 122.5 1.0
CA D:GLY35 3.6 97.0 1.0
SG C:CYS115 3.8 104.5 1.0
C D:GLY35 3.8 96.5 1.0
CA C:CYS29 3.9 91.2 1.0
S1 C:SF4501 3.9 111.3 1.0
SG C:CYS54 3.9 88.0 1.0
O D:GLY35 4.0 93.6 1.0
OD1 D:ASP36 4.1 90.0 1.0
O D:GLN34 4.2 96.6 1.0
N D:ASP36 4.3 90.6 1.0
N C:CYS29 4.3 91.0 1.0
N C:GLY148 4.6 112.1 1.0
C C:CYS29 4.6 90.3 1.0
N D:GLY35 4.7 97.2 1.0
CA C:GLY148 4.8 114.6 1.0
CD2 C:LEU57 4.8 68.7 1.0
C D:GLN34 4.8 96.2 1.0
CG C:LEU31 4.8 61.1 1.0
N C:GLY30 5.0 64.1 1.0

Iron binding site 6 out of 8 in 9e7h

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Iron binding site 6 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:124.1
occ:1.00
 FE2 C:SF4501 0.0 124.1 1.0
OD1 D:ASP36 1.5 90.0 1.0
S4 C:SF4501 2.3 119.0 1.0
S3 C:SF4501 2.3 111.4 1.0
S1 C:SF4501 2.3 111.3 1.0
FE3 C:SF4501 2.7 129.4 1.0
FE1 C:SF4501 2.7 131.8 1.0
FE4 C:SF4501 2.7 122.5 1.0
CG D:ASP36 2.8 86.2 1.0
N D:ASP36 3.3 90.6 1.0
OD2 D:ASP36 3.5 83.6 1.0
C D:GLY35 3.6 96.5 1.0
SG C:CYS115 3.7 104.5 1.0
CA D:ASP36 3.8 85.0 1.0
CB D:ASP36 3.8 84.3 1.0
SG C:CYS54 3.8 88.0 1.0
S2 C:SF4501 3.9 118.1 1.0
O D:GLY35 3.9 93.6 1.0
SG C:CYS29 4.1 95.2 1.0
CA D:GLY35 4.2 97.0 1.0
O D:PRO33 4.5 98.5 1.0
CG2 C:THR53 4.5 69.8 1.0
CB C:THR53 4.7 66.5 1.0
CB C:CYS29 4.9 90.5 1.0
CB C:CYS115 4.9 114.7 1.0

Iron binding site 7 out of 8 in 9e7h

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Iron binding site 7 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:129.4
occ:1.00
 FE3 C:SF4501 0.0 129.4 1.0
SG C:CYS54 1.3 88.0 1.0
S1 C:SF4501 2.3 111.3 1.0
S2 C:SF4501 2.3 118.1 1.0
S4 C:SF4501 2.3 119.0 1.0
FE2 C:SF4501 2.7 124.1 1.0
FE4 C:SF4501 2.7 122.5 1.0
FE1 C:SF4501 2.7 131.8 1.0
CB C:CYS54 3.1 81.2 1.0
CA C:CYS54 3.7 76.7 1.0
SG C:CYS115 3.8 104.5 1.0
SG C:CYS29 3.8 95.2 1.0
S3 C:SF4501 3.9 111.4 1.0
OD1 D:ASP36 4.1 90.0 1.0
N C:CYS54 4.1 78.2 1.0
CD1 C:LEU31 4.2 64.6 1.0
CB C:SER114 4.4 107.6 1.0
N C:CYS115 4.7 113.2 1.0
C C:THR53 4.7 68.0 1.0
CG C:LEU31 4.8 61.1 1.0
CB C:CYS115 4.9 114.7 1.0
O C:THR53 5.0 70.1 1.0
OG C:SER114 5.0 106.8 1.0

Iron binding site 8 out of 8 in 9e7h

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Iron binding site 8 out of 8 in the Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryoem Structure of Bchn-Bchb Bound to Pchlide From the Dpor Under Turnover Complex Dataset within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:122.5
occ:1.00
 FE4 C:SF4501 0.0 122.5 1.0
SG C:CYS115 1.2 104.5 1.0
S2 C:SF4501 2.3 118.1 1.0
S3 C:SF4501 2.3 111.4 1.0
S1 C:SF4501 2.3 111.3 1.0
FE3 C:SF4501 2.7 129.4 1.0
FE2 C:SF4501 2.7 124.1 1.0
FE1 C:SF4501 2.7 131.8 1.0
CB C:CYS115 2.8 114.7 1.0
N C:CYS115 3.5 113.2 1.0
CA C:CYS115 3.7 112.8 1.0
S4 C:SF4501 3.9 119.0 1.0
SG C:CYS54 3.9 88.0 1.0
OD1 D:ASP36 4.0 90.0 1.0
SG C:CYS29 4.2 95.2 1.0
N C:GLY148 4.4 112.1 1.0
CB C:CYS29 4.4 90.5 1.0
C C:SER114 4.7 108.0 1.0
CB C:SER114 4.9 107.6 1.0
CB D:PRO33 4.9 99.1 1.0
CA C:GLY148 4.9 114.6 1.0
OG C:SER147 4.9 112.9 1.0
CD C:PRO116 4.9 117.6 1.0
N C:ILE149 5.0 125.0 1.0

Reference:

R.Kashyap, N.Walsh, J.Deveryshetty, M.Tokmina-Lukaszewska, K.Zhao, Y.J.Gan, B.M.Hoffman, R.Sarangi, B.Bothner, B.Bennett, E.Antony. Cryo-Em Captures the Coordination of Asymmetric Electron Transfer Through A Di-Copper Site in Dpor. Nat Commun V. 16 3866 2025.
ISSN: ESSN 2041-1723
PubMed: 40274796
DOI: 10.1038/S41467-025-59158-7
Page generated: Fri Aug 8 04:07:47 2025

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