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Iron in PDB 9epi: Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection

Protein crystallography data

The structure of Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection, PDB code: 9epi was solved by L.J.Williams, R.L.Owen, J.A.R.Worrall, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.10 / 1.39
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 72.72, 68.2, 74.6, 90, 105.6, 90
R / Rfree (%) 17 / 19.4

Iron Binding Sites:

The binding sites of Iron atom in the Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection (pdb code 9epi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection, PDB code: 9epi:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9epi

Go back to Iron Binding Sites List in 9epi
Iron binding site 1 out of 2 in the Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:11.3
occ:1.00
FE A:HEM501 0.0 11.3 1.0
ND A:HEM501 2.0 11.0 1.0
NA A:HEM501 2.0 10.8 1.0
NB A:HEM501 2.1 11.7 1.0
NC A:HEM501 2.1 11.4 1.0
NE2 A:HIS326 2.1 12.2 1.0
O A:HOH717 2.3 13.3 1.0
C1D A:HEM501 3.0 11.8 1.0
C4D A:HEM501 3.0 10.8 1.0
C1B A:HEM501 3.0 11.7 1.0
C4A A:HEM501 3.0 10.4 1.0
C4B A:HEM501 3.0 12.2 1.0
C1A A:HEM501 3.0 11.1 1.0
C4C A:HEM501 3.1 12.1 1.0
CE1 A:HIS326 3.1 12.8 1.0
C1C A:HEM501 3.1 11.7 1.0
CD2 A:HIS326 3.1 11.7 1.0
CHB A:HEM501 3.4 11.6 1.0
CHD A:HEM501 3.4 12.0 1.0
CHA A:HEM501 3.4 11.2 1.0
CHC A:HEM501 3.4 12.7 1.0
ND1 A:HIS326 4.2 12.1 1.0
C2D A:HEM501 4.2 11.8 1.0
C3A A:HEM501 4.2 11.0 1.0
CG A:HIS326 4.3 11.8 1.0
C2A A:HEM501 4.3 10.5 1.0
C3B A:HEM501 4.3 12.3 1.0
C2B A:HEM501 4.3 11.9 1.0
NH1 A:ARG342 4.3 12.3 1.0
C3D A:HEM501 4.3 10.9 1.0
C3C A:HEM501 4.3 12.1 1.0
C2C A:HEM501 4.3 11.7 1.0
O A:HOH662 4.3 14.7 1.0
OD1 A:ASP239 4.6 12.6 1.0
CD A:ARG342 4.9 12.3 1.0

Iron binding site 2 out of 2 in 9epi

Go back to Iron Binding Sites List in 9epi
Iron binding site 2 out of 2 in the Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:11.5
occ:1.00
FE B:HEM501 0.0 11.5 1.0
ND B:HEM501 2.0 11.5 1.0
NA B:HEM501 2.0 11.7 1.0
NC B:HEM501 2.0 11.5 1.0
NB B:HEM501 2.1 12.4 1.0
NE2 B:HIS326 2.1 10.9 1.0
O B:HOH703 2.3 13.1 0.5
C1D B:HEM501 3.0 11.4 1.0
C4D B:HEM501 3.0 12.4 1.0
C4A B:HEM501 3.0 11.9 1.0
CE1 B:HIS326 3.0 11.8 1.0
C1B B:HEM501 3.0 12.1 1.0
C4C B:HEM501 3.0 12.5 1.0
C1A B:HEM501 3.0 11.9 1.0
C4B B:HEM501 3.0 11.8 1.0
CD2 B:HIS326 3.1 11.8 1.0
C1C B:HEM501 3.1 11.5 1.0
CHB B:HEM501 3.4 12.9 1.0
CHD B:HEM501 3.4 11.6 1.0
CHA B:HEM501 3.4 11.6 1.0
CHC B:HEM501 3.4 11.0 1.0
O B:HOH703 3.5 14.6 0.5
ND1 B:HIS326 4.2 13.0 1.0
CG B:HIS326 4.2 11.1 1.0
C3D B:HEM501 4.2 12.1 1.0
C2A B:HEM501 4.2 11.8 1.0
C3C B:HEM501 4.2 11.6 1.0
C2D B:HEM501 4.2 12.5 1.0
C3A B:HEM501 4.2 12.9 1.0
C2B B:HEM501 4.3 12.7 1.0
C3B B:HEM501 4.3 11.8 1.0
C2C B:HEM501 4.3 12.0 1.0
NH1 B:ARG342 4.3 14.4 1.0
CD B:ARG342 5.0 13.6 1.0

Reference:

L.J.Williams, R.L.Owen, J.A.R.Worrall, M.A.Hough. Dtpaa Y389F 53 Fs 10 Microjoules Xfel Pulse Data Collection To Be Published.
Page generated: Fri Aug 8 04:10:43 2025

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