Iron in PDB 9es7: Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
Enzymatic activity of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
All present enzymatic activity of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution:
7.1.1.6;
Other elements in 9es7:
The structure of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
(pdb code 9es7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution, PDB code: 9es7:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 1 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe301
b:46.4
occ:1.00
|
FE
|
A:HEM301
|
0.0
|
46.4
|
1.0
|
|
NB
|
A:HEM301
|
2.0
|
33.7
|
1.0
|
|
NC
|
A:HEM301
|
2.0
|
36.0
|
1.0
|
|
NA
|
A:HEM301
|
2.1
|
37.1
|
1.0
|
|
ND
|
A:HEM301
|
2.1
|
36.6
|
1.0
|
|
NE2
|
A:HIS187
|
2.3
|
26.6
|
1.0
|
|
NE2
|
A:HIS86
|
2.3
|
26.2
|
1.0
|
|
C1B
|
A:HEM301
|
3.1
|
28.6
|
1.0
|
|
C4C
|
A:HEM301
|
3.1
|
30.7
|
1.0
|
|
C4B
|
A:HEM301
|
3.1
|
29.1
|
1.0
|
|
C4A
|
A:HEM301
|
3.1
|
27.1
|
1.0
|
|
C1D
|
A:HEM301
|
3.1
|
35.5
|
1.0
|
|
C1C
|
A:HEM301
|
3.1
|
22.7
|
1.0
|
|
C1A
|
A:HEM301
|
3.1
|
26.2
|
1.0
|
|
C4D
|
A:HEM301
|
3.1
|
26.0
|
1.0
|
|
CE1
|
A:HIS187
|
3.2
|
25.6
|
1.0
|
|
CE1
|
A:HIS86
|
3.2
|
18.1
|
1.0
|
|
CD2
|
A:HIS187
|
3.4
|
27.1
|
1.0
|
|
CD2
|
A:HIS86
|
3.4
|
23.5
|
1.0
|
|
CHB
|
A:HEM301
|
3.4
|
19.4
|
1.0
|
|
CHD
|
A:HEM301
|
3.4
|
25.2
|
1.0
|
|
CHC
|
A:HEM301
|
3.4
|
15.1
|
1.0
|
|
CHA
|
A:HEM301
|
3.5
|
23.0
|
1.0
|
|
C2B
|
A:HEM301
|
4.3
|
30.6
|
1.0
|
|
C3B
|
A:HEM301
|
4.3
|
29.2
|
1.0
|
|
C3C
|
A:HEM301
|
4.3
|
27.4
|
1.0
|
|
C2C
|
A:HEM301
|
4.3
|
29.7
|
1.0
|
|
C2D
|
A:HEM301
|
4.3
|
33.2
|
1.0
|
|
C3A
|
A:HEM301
|
4.3
|
29.1
|
1.0
|
|
C2A
|
A:HEM301
|
4.3
|
31.0
|
1.0
|
|
C3D
|
A:HEM301
|
4.3
|
32.0
|
1.0
|
|
ND1
|
A:HIS187
|
4.3
|
30.4
|
1.0
|
|
ND1
|
A:HIS86
|
4.4
|
27.1
|
1.0
|
|
CG
|
A:HIS187
|
4.5
|
32.7
|
1.0
|
|
CG
|
A:HIS86
|
4.5
|
31.1
|
1.0
|
|
NE2
|
A:GLN47
|
4.9
|
34.1
|
1.0
|
|
Iron binding site 2 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 2 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:47.8
occ:1.00
|
FE
|
A:HEM302
|
0.0
|
47.8
|
1.0
|
|
NB
|
A:HEM302
|
2.0
|
32.8
|
1.0
|
|
NA
|
A:HEM302
|
2.1
|
36.1
|
1.0
|
|
NC
|
A:HEM302
|
2.1
|
36.9
|
1.0
|
|
ND
|
A:HEM302
|
2.1
|
40.7
|
1.0
|
|
NE2
|
A:HIS100
|
2.4
|
26.5
|
1.0
|
|
NE2
|
A:HIS202
|
2.4
|
26.0
|
1.0
|
|
C4A
|
A:HEM302
|
3.0
|
28.1
|
1.0
|
|
C4B
|
A:HEM302
|
3.0
|
27.1
|
1.0
|
|
C1B
|
A:HEM302
|
3.1
|
20.2
|
1.0
|
|
C1C
|
A:HEM302
|
3.1
|
30.8
|
1.0
|
|
C4C
|
A:HEM302
|
3.1
|
23.0
|
1.0
|
|
C1D
|
A:HEM302
|
3.1
|
25.4
|
1.0
|
|
C1A
|
A:HEM302
|
3.1
|
24.6
|
1.0
|
|
C4D
|
A:HEM302
|
3.1
|
25.6
|
1.0
|
|
CD2
|
A:HIS100
|
3.2
|
21.6
|
1.0
|
|
CD2
|
A:HIS202
|
3.4
|
27.4
|
1.0
|
|
CE1
|
A:HIS202
|
3.4
|
28.6
|
1.0
|
|
CHB
|
A:HEM302
|
3.4
|
18.1
|
1.0
|
|
CE1
|
A:HIS100
|
3.4
|
21.2
|
1.0
|
|
CHC
|
A:HEM302
|
3.4
|
25.8
|
1.0
|
|
CHD
|
A:HEM302
|
3.4
|
21.4
|
1.0
|
|
CHA
|
A:HEM302
|
3.4
|
18.7
|
1.0
|
|
C3A
|
A:HEM302
|
4.3
|
32.7
|
1.0
|
|
C3B
|
A:HEM302
|
4.3
|
30.0
|
1.0
|
|
C2B
|
A:HEM302
|
4.3
|
26.4
|
1.0
|
|
C2A
|
A:HEM302
|
4.3
|
32.2
|
1.0
|
|
C2C
|
A:HEM302
|
4.3
|
35.2
|
1.0
|
|
C3C
|
A:HEM302
|
4.3
|
31.3
|
1.0
|
|
C2D
|
A:HEM302
|
4.3
|
27.6
|
1.0
|
|
C3D
|
A:HEM302
|
4.3
|
29.0
|
1.0
|
|
CG
|
A:HIS100
|
4.4
|
29.9
|
1.0
|
|
ND1
|
A:HIS100
|
4.5
|
34.4
|
1.0
|
|
ND1
|
A:HIS202
|
4.5
|
35.3
|
1.0
|
|
CG
|
A:HIS202
|
4.5
|
31.6
|
1.0
|
|
Iron binding site 3 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 3 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:55.6
occ:1.00
|
FE
|
A:HEC303
|
0.0
|
55.6
|
1.0
|
|
NC
|
A:HEC303
|
2.1
|
41.3
|
1.0
|
|
NA
|
A:HEC303
|
2.1
|
40.2
|
1.0
|
|
ND
|
A:HEC303
|
2.1
|
37.6
|
1.0
|
|
NB
|
A:HEC303
|
2.1
|
40.3
|
1.0
|
|
O
|
A:HOH405
|
2.8
|
43.3
|
1.0
|
|
C1A
|
A:HEC303
|
3.1
|
32.3
|
1.0
|
|
C4D
|
A:HEC303
|
3.1
|
28.1
|
1.0
|
|
C1D
|
A:HEC303
|
3.1
|
29.6
|
1.0
|
|
C1C
|
A:HEC303
|
3.1
|
29.0
|
1.0
|
|
C4A
|
A:HEC303
|
3.1
|
29.2
|
1.0
|
|
C4C
|
A:HEC303
|
3.1
|
30.7
|
1.0
|
|
C4B
|
A:HEC303
|
3.1
|
35.3
|
1.0
|
|
C1B
|
A:HEC303
|
3.1
|
34.1
|
1.0
|
|
CHA
|
A:HEC303
|
3.4
|
26.3
|
1.0
|
|
CHD
|
A:HEC303
|
3.4
|
28.0
|
1.0
|
|
CHC
|
A:HEC303
|
3.4
|
29.1
|
1.0
|
|
CHB
|
A:HEC303
|
3.5
|
25.4
|
1.0
|
|
CZ
|
B:PHE40
|
3.9
|
33.4
|
1.0
|
|
CE2
|
B:PHE40
|
4.1
|
31.2
|
1.0
|
|
C2A
|
A:HEC303
|
4.3
|
38.7
|
1.0
|
|
C3A
|
A:HEC303
|
4.3
|
35.0
|
1.0
|
|
C2C
|
A:HEC303
|
4.3
|
36.7
|
1.0
|
|
C3D
|
A:HEC303
|
4.3
|
32.6
|
1.0
|
|
C2D
|
A:HEC303
|
4.3
|
34.0
|
1.0
|
|
C3C
|
A:HEC303
|
4.3
|
31.5
|
1.0
|
|
C3B
|
A:HEC303
|
4.3
|
31.6
|
1.0
|
|
C2B
|
A:HEC303
|
4.3
|
33.4
|
1.0
|
|
CMA
|
A:HEM302
|
4.8
|
22.9
|
1.0
|
|
CE1
|
B:PHE40
|
4.8
|
32.6
|
1.0
|
|
CA
|
A:GLY38
|
4.9
|
33.6
|
1.0
|
|
N
|
A:GLY38
|
5.0
|
41.3
|
1.0
|
|
O
|
A:TYR34
|
5.0
|
38.1
|
1.0
|
|
Iron binding site 4 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 4 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe301
b:63.2
occ:1.00
|
FE
|
C:HEC301
|
0.0
|
63.2
|
1.0
|
|
NA
|
C:HEC301
|
2.0
|
57.5
|
1.0
|
|
NC
|
C:HEC301
|
2.0
|
56.7
|
1.0
|
|
NB
|
C:HEC301
|
2.1
|
60.0
|
1.0
|
|
ND
|
C:HEC301
|
2.1
|
59.9
|
1.0
|
|
N
|
C:TYR1
|
2.2
|
36.8
|
1.0
|
|
NE2
|
C:HIS25
|
2.3
|
31.4
|
1.0
|
|
CE1
|
C:HIS25
|
3.0
|
37.1
|
1.0
|
|
C4C
|
C:HEC301
|
3.1
|
45.9
|
1.0
|
|
C1A
|
C:HEC301
|
3.1
|
52.2
|
1.0
|
|
C4A
|
C:HEC301
|
3.1
|
44.7
|
1.0
|
|
C1B
|
C:HEC301
|
3.1
|
43.3
|
1.0
|
|
C1D
|
C:HEC301
|
3.1
|
51.5
|
1.0
|
|
C4B
|
C:HEC301
|
3.1
|
45.5
|
1.0
|
|
C1C
|
C:HEC301
|
3.1
|
54.6
|
1.0
|
|
C4D
|
C:HEC301
|
3.1
|
54.4
|
1.0
|
|
CA
|
C:TYR1
|
3.4
|
46.8
|
1.0
|
|
CHD
|
C:HEC301
|
3.4
|
45.5
|
1.0
|
|
CHA
|
C:HEC301
|
3.4
|
50.8
|
1.0
|
|
CHB
|
C:HEC301
|
3.4
|
45.0
|
1.0
|
|
CHC
|
C:HEC301
|
3.4
|
46.9
|
1.0
|
|
CD2
|
C:HIS25
|
3.4
|
41.7
|
1.0
|
|
C
|
C:TYR1
|
4.0
|
45.0
|
1.0
|
|
O
|
C:TYR1
|
4.1
|
55.8
|
1.0
|
|
ND1
|
C:HIS25
|
4.3
|
42.9
|
1.0
|
|
C2A
|
C:HEC301
|
4.3
|
51.0
|
1.0
|
|
C3C
|
C:HEC301
|
4.3
|
53.6
|
1.0
|
|
C3A
|
C:HEC301
|
4.3
|
52.8
|
1.0
|
|
C2B
|
C:HEC301
|
4.3
|
48.2
|
1.0
|
|
C3B
|
C:HEC301
|
4.3
|
50.3
|
1.0
|
|
C2C
|
C:HEC301
|
4.3
|
51.3
|
1.0
|
|
C2D
|
C:HEC301
|
4.3
|
52.3
|
1.0
|
|
C3D
|
C:HEC301
|
4.3
|
53.1
|
1.0
|
|
CG
|
C:HIS25
|
4.5
|
43.3
|
1.0
|
|
CB
|
C:TYR1
|
4.6
|
45.2
|
1.0
|
|
N
|
C:PRO2
|
4.9
|
48.0
|
1.0
|
|
CG
|
C:TYR1
|
5.0
|
48.0
|
1.0
|
|
CD2
|
C:PHE4
|
5.0
|
51.1
|
1.0
|
|
Iron binding site 5 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 5 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:81.9
occ:1.00
|
FE1
|
D:FES202
|
0.0
|
81.9
|
1.0
|
|
ND1
|
D:HIS128
|
2.1
|
63.4
|
1.0
|
|
ND1
|
D:HIS109
|
2.2
|
60.5
|
1.0
|
|
S1
|
D:FES202
|
2.2
|
59.0
|
1.0
|
|
S2
|
D:FES202
|
2.2
|
53.1
|
1.0
|
|
FE2
|
D:FES202
|
2.7
|
82.8
|
1.0
|
|
CE1
|
D:HIS128
|
3.1
|
57.2
|
1.0
|
|
CG
|
D:HIS109
|
3.1
|
55.8
|
1.0
|
|
CG
|
D:HIS128
|
3.1
|
52.1
|
1.0
|
|
CE1
|
D:HIS109
|
3.1
|
51.3
|
1.0
|
|
CB
|
D:HIS109
|
3.4
|
54.5
|
1.0
|
|
CB
|
D:HIS128
|
3.5
|
50.6
|
1.0
|
|
N
|
D:HIS128
|
3.9
|
62.0
|
1.0
|
|
CB
|
D:CYS127
|
3.9
|
50.5
|
1.0
|
|
NE2
|
D:HIS128
|
4.2
|
49.6
|
1.0
|
|
NE2
|
D:HIS109
|
4.2
|
48.3
|
1.0
|
|
CD2
|
D:HIS109
|
4.2
|
54.6
|
1.0
|
|
CD2
|
D:HIS128
|
4.2
|
47.7
|
1.0
|
|
CA
|
D:HIS128
|
4.3
|
53.8
|
1.0
|
|
SG
|
D:CYS125
|
4.3
|
54.3
|
1.0
|
|
C
|
D:CYS127
|
4.5
|
57.1
|
1.0
|
|
N
|
D:LEU110
|
4.5
|
59.1
|
1.0
|
|
SG
|
D:CYS107
|
4.5
|
53.6
|
1.0
|
|
CA
|
D:HIS109
|
4.7
|
50.9
|
1.0
|
|
CA
|
D:CYS127
|
4.8
|
48.8
|
1.0
|
|
CB
|
D:LEU110
|
4.8
|
51.5
|
1.0
|
|
CG
|
D:LEU110
|
4.8
|
53.8
|
1.0
|
|
C
|
D:HIS109
|
4.9
|
48.4
|
1.0
|
|
OG
|
D:SER130
|
5.0
|
55.3
|
1.0
|
|
Iron binding site 6 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 6 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:82.8
occ:1.00
|
FE2
|
D:FES202
|
0.0
|
82.8
|
1.0
|
|
S1
|
D:FES202
|
2.2
|
59.0
|
1.0
|
|
S2
|
D:FES202
|
2.2
|
53.1
|
1.0
|
|
SG
|
D:CYS107
|
2.3
|
53.6
|
1.0
|
|
SG
|
D:CYS125
|
2.3
|
54.3
|
1.0
|
|
FE1
|
D:FES202
|
2.7
|
81.9
|
1.0
|
|
CB
|
D:CYS107
|
3.3
|
42.5
|
1.0
|
|
CB
|
D:CYS125
|
3.4
|
44.1
|
1.0
|
|
CB
|
D:HIS109
|
3.8
|
54.5
|
1.0
|
|
ND1
|
D:HIS109
|
4.3
|
60.5
|
1.0
|
|
CB
|
D:CYS127
|
4.3
|
50.5
|
1.0
|
|
CB
|
D:CYS112
|
4.5
|
53.4
|
1.0
|
|
OG
|
D:SER130
|
4.5
|
55.3
|
1.0
|
|
CG
|
D:HIS109
|
4.6
|
55.8
|
1.0
|
|
ND1
|
D:HIS128
|
4.6
|
63.4
|
1.0
|
|
CB
|
D:SER130
|
4.7
|
53.7
|
1.0
|
|
CA
|
D:CYS107
|
4.7
|
42.1
|
1.0
|
|
N
|
D:HIS128
|
4.8
|
62.0
|
1.0
|
|
SG
|
D:CYS112
|
4.8
|
75.6
|
1.0
|
|
N
|
D:HIS109
|
4.8
|
58.7
|
1.0
|
|
N
|
D:LEU110
|
4.8
|
59.1
|
1.0
|
|
CA
|
D:CYS125
|
4.8
|
43.9
|
1.0
|
|
CA
|
D:HIS109
|
4.9
|
50.9
|
1.0
|
|
N
|
D:CYS112
|
4.9
|
55.1
|
1.0
|
|
Iron binding site 7 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 7 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe301
b:46.9
occ:1.00
|
FE
|
I:HEM301
|
0.0
|
46.9
|
1.0
|
|
NB
|
I:HEM301
|
2.0
|
34.4
|
1.0
|
|
NC
|
I:HEM301
|
2.0
|
36.6
|
1.0
|
|
NA
|
I:HEM301
|
2.1
|
38.3
|
1.0
|
|
ND
|
I:HEM301
|
2.1
|
38.0
|
1.0
|
|
NE2
|
I:HIS187
|
2.3
|
26.6
|
1.0
|
|
NE2
|
I:HIS86
|
2.3
|
26.9
|
1.0
|
|
C1B
|
I:HEM301
|
3.1
|
29.6
|
1.0
|
|
C4C
|
I:HEM301
|
3.1
|
31.2
|
1.0
|
|
C4B
|
I:HEM301
|
3.1
|
29.9
|
1.0
|
|
C4A
|
I:HEM301
|
3.1
|
27.3
|
1.0
|
|
C1D
|
I:HEM301
|
3.1
|
36.1
|
1.0
|
|
C1C
|
I:HEM301
|
3.1
|
24.4
|
1.0
|
|
C1A
|
I:HEM301
|
3.1
|
24.9
|
1.0
|
|
C4D
|
I:HEM301
|
3.1
|
28.0
|
1.0
|
|
CE1
|
I:HIS187
|
3.2
|
26.5
|
1.0
|
|
CE1
|
I:HIS86
|
3.2
|
19.3
|
1.0
|
|
CD2
|
I:HIS187
|
3.4
|
27.5
|
1.0
|
|
CD2
|
I:HIS86
|
3.4
|
24.0
|
1.0
|
|
CHB
|
I:HEM301
|
3.4
|
20.2
|
1.0
|
|
CHD
|
I:HEM301
|
3.4
|
28.1
|
1.0
|
|
CHC
|
I:HEM301
|
3.4
|
15.1
|
1.0
|
|
CHA
|
I:HEM301
|
3.5
|
22.9
|
1.0
|
|
C2B
|
I:HEM301
|
4.3
|
29.6
|
1.0
|
|
C3B
|
I:HEM301
|
4.3
|
28.4
|
1.0
|
|
C3C
|
I:HEM301
|
4.3
|
28.9
|
1.0
|
|
C2C
|
I:HEM301
|
4.3
|
31.2
|
1.0
|
|
C3A
|
I:HEM301
|
4.3
|
30.3
|
1.0
|
|
C2D
|
I:HEM301
|
4.3
|
33.0
|
1.0
|
|
C2A
|
I:HEM301
|
4.3
|
32.5
|
1.0
|
|
C3D
|
I:HEM301
|
4.3
|
31.9
|
1.0
|
|
ND1
|
I:HIS187
|
4.3
|
32.4
|
1.0
|
|
ND1
|
I:HIS86
|
4.4
|
28.4
|
1.0
|
|
CG
|
I:HIS187
|
4.5
|
34.0
|
1.0
|
|
CG
|
I:HIS86
|
4.5
|
30.6
|
1.0
|
|
NE2
|
I:GLN47
|
4.9
|
33.6
|
1.0
|
|
Iron binding site 8 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 8 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe302
b:49.1
occ:1.00
|
FE
|
I:HEM302
|
0.0
|
49.1
|
1.0
|
|
NB
|
I:HEM302
|
2.0
|
34.1
|
1.0
|
|
NA
|
I:HEM302
|
2.1
|
37.3
|
1.0
|
|
NC
|
I:HEM302
|
2.1
|
37.9
|
1.0
|
|
ND
|
I:HEM302
|
2.1
|
41.0
|
1.0
|
|
NE2
|
I:HIS100
|
2.4
|
27.9
|
1.0
|
|
NE2
|
I:HIS202
|
2.4
|
24.9
|
1.0
|
|
C4A
|
I:HEM302
|
3.0
|
29.6
|
1.0
|
|
C4B
|
I:HEM302
|
3.0
|
28.0
|
1.0
|
|
C1B
|
I:HEM302
|
3.1
|
19.2
|
1.0
|
|
C1C
|
I:HEM302
|
3.1
|
31.0
|
1.0
|
|
C4C
|
I:HEM302
|
3.1
|
23.1
|
1.0
|
|
C1D
|
I:HEM302
|
3.1
|
24.5
|
1.0
|
|
C1A
|
I:HEM302
|
3.1
|
25.6
|
1.0
|
|
C4D
|
I:HEM302
|
3.1
|
25.3
|
1.0
|
|
CD2
|
I:HIS100
|
3.2
|
23.2
|
1.0
|
|
CD2
|
I:HIS202
|
3.4
|
28.2
|
1.0
|
|
CE1
|
I:HIS202
|
3.4
|
28.5
|
1.0
|
|
CHB
|
I:HEM302
|
3.4
|
19.9
|
1.0
|
|
CE1
|
I:HIS100
|
3.4
|
21.1
|
1.0
|
|
CHC
|
I:HEM302
|
3.4
|
26.7
|
1.0
|
|
CHD
|
I:HEM302
|
3.4
|
22.2
|
1.0
|
|
CHA
|
I:HEM302
|
3.4
|
21.2
|
1.0
|
|
C3A
|
I:HEM302
|
4.3
|
31.9
|
1.0
|
|
C3B
|
I:HEM302
|
4.3
|
30.1
|
1.0
|
|
C2B
|
I:HEM302
|
4.3
|
27.7
|
1.0
|
|
C2A
|
I:HEM302
|
4.3
|
32.2
|
1.0
|
|
C2C
|
I:HEM302
|
4.3
|
36.3
|
1.0
|
|
C3C
|
I:HEM302
|
4.3
|
30.4
|
1.0
|
|
C2D
|
I:HEM302
|
4.3
|
27.5
|
1.0
|
|
C3D
|
I:HEM302
|
4.3
|
29.0
|
1.0
|
|
CG
|
I:HIS100
|
4.4
|
30.2
|
1.0
|
|
ND1
|
I:HIS100
|
4.5
|
35.7
|
1.0
|
|
ND1
|
I:HIS202
|
4.5
|
35.6
|
1.0
|
|
CG
|
I:HIS202
|
4.5
|
33.7
|
1.0
|
|
Iron binding site 9 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 9 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe303
b:57.2
occ:1.00
|
FE
|
I:HEC303
|
0.0
|
57.2
|
1.0
|
|
NC
|
I:HEC303
|
2.1
|
41.6
|
1.0
|
|
NA
|
I:HEC303
|
2.1
|
41.2
|
1.0
|
|
NB
|
I:HEC303
|
2.1
|
41.5
|
1.0
|
|
ND
|
I:HEC303
|
2.1
|
37.3
|
1.0
|
|
O
|
I:HOH405
|
2.8
|
44.2
|
1.0
|
|
C1A
|
I:HEC303
|
3.1
|
33.3
|
1.0
|
|
C4D
|
I:HEC303
|
3.1
|
28.1
|
1.0
|
|
C1D
|
I:HEC303
|
3.1
|
30.8
|
1.0
|
|
C1C
|
I:HEC303
|
3.1
|
30.0
|
1.0
|
|
C4A
|
I:HEC303
|
3.1
|
28.9
|
1.0
|
|
C4C
|
I:HEC303
|
3.1
|
32.6
|
1.0
|
|
C4B
|
I:HEC303
|
3.1
|
34.6
|
1.0
|
|
C1B
|
I:HEC303
|
3.1
|
33.4
|
1.0
|
|
CHA
|
I:HEC303
|
3.4
|
26.0
|
1.0
|
|
CHD
|
I:HEC303
|
3.4
|
28.5
|
1.0
|
|
CHC
|
I:HEC303
|
3.4
|
29.4
|
1.0
|
|
CHB
|
I:HEC303
|
3.5
|
26.0
|
1.0
|
|
CZ
|
J:PHE40
|
3.9
|
33.4
|
1.0
|
|
CE2
|
J:PHE40
|
4.1
|
31.2
|
1.0
|
|
C2A
|
I:HEC303
|
4.3
|
39.5
|
1.0
|
|
C3A
|
I:HEC303
|
4.3
|
34.9
|
1.0
|
|
C2C
|
I:HEC303
|
4.3
|
37.3
|
1.0
|
|
C3D
|
I:HEC303
|
4.3
|
32.7
|
1.0
|
|
C2D
|
I:HEC303
|
4.3
|
34.0
|
1.0
|
|
C3C
|
I:HEC303
|
4.3
|
32.8
|
1.0
|
|
C3B
|
I:HEC303
|
4.3
|
32.6
|
1.0
|
|
C2B
|
I:HEC303
|
4.3
|
35.4
|
1.0
|
|
CMA
|
I:HEM302
|
4.8
|
23.3
|
1.0
|
|
CE1
|
J:PHE40
|
4.8
|
32.6
|
1.0
|
|
CA
|
I:GLY38
|
4.9
|
34.3
|
1.0
|
|
N
|
I:GLY38
|
5.0
|
41.6
|
1.0
|
|
O
|
I:TYR34
|
5.0
|
39.3
|
1.0
|
|
Iron binding site 10 out
of 12 in 9es7
Go back to
Iron Binding Sites List in 9es7
Iron binding site 10 out
of 12 in the Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryo-Em Structure of Spinacia Oleracea Cytochrome B6F Complex with Water Molecules at 1.94 A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Fe301
b:63.2
occ:1.00
|
FE
|
K:HEC301
|
0.0
|
63.2
|
1.0
|
|
NA
|
K:HEC301
|
2.0
|
57.8
|
1.0
|
|
NC
|
K:HEC301
|
2.0
|
56.2
|
1.0
|
|
NB
|
K:HEC301
|
2.1
|
59.8
|
1.0
|
|
ND
|
K:HEC301
|
2.1
|
59.7
|
1.0
|
|
N
|
K:TYR1
|
2.2
|
36.8
|
1.0
|
|
NE2
|
K:HIS25
|
2.3
|
31.4
|
1.0
|
|
CE1
|
K:HIS25
|
3.0
|
37.1
|
1.0
|
|
C4C
|
K:HEC301
|
3.1
|
45.7
|
1.0
|
|
C1A
|
K:HEC301
|
3.1
|
52.2
|
1.0
|
|
C4A
|
K:HEC301
|
3.1
|
44.2
|
1.0
|
|
C1B
|
K:HEC301
|
3.1
|
42.6
|
1.0
|
|
C1D
|
K:HEC301
|
3.1
|
51.9
|
1.0
|
|
C4B
|
K:HEC301
|
3.1
|
45.0
|
1.0
|
|
C1C
|
K:HEC301
|
3.1
|
53.8
|
1.0
|
|
C4D
|
K:HEC301
|
3.1
|
52.9
|
1.0
|
|
CA
|
K:TYR1
|
3.4
|
46.8
|
1.0
|
|
CHD
|
K:HEC301
|
3.4
|
46.2
|
1.0
|
|
CHA
|
K:HEC301
|
3.4
|
50.3
|
1.0
|
|
CHB
|
K:HEC301
|
3.4
|
43.6
|
1.0
|
|
CD2
|
K:HIS25
|
3.4
|
41.7
|
1.0
|
|
CHC
|
K:HEC301
|
3.4
|
46.0
|
1.0
|
|
C
|
K:TYR1
|
4.0
|
45.0
|
1.0
|
|
O
|
K:TYR1
|
4.0
|
55.8
|
1.0
|
|
ND1
|
K:HIS25
|
4.3
|
42.9
|
1.0
|
|
C2A
|
K:HEC301
|
4.3
|
50.6
|
1.0
|
|
C3C
|
K:HEC301
|
4.3
|
53.0
|
1.0
|
|
C3A
|
K:HEC301
|
4.3
|
52.2
|
1.0
|
|
C2B
|
K:HEC301
|
4.3
|
47.8
|
1.0
|
|
C3B
|
K:HEC301
|
4.3
|
50.4
|
1.0
|
|
C2C
|
K:HEC301
|
4.3
|
50.7
|
1.0
|
|
C2D
|
K:HEC301
|
4.3
|
52.7
|
1.0
|
|
C3D
|
K:HEC301
|
4.3
|
52.7
|
1.0
|
|
CG
|
K:HIS25
|
4.5
|
43.3
|
1.0
|
|
CB
|
K:TYR1
|
4.6
|
45.2
|
1.0
|
|
N
|
K:PRO2
|
4.9
|
48.0
|
1.0
|
|
CG
|
K:TYR1
|
5.0
|
48.0
|
1.0
|
|
CD2
|
K:PHE4
|
5.0
|
51.1
|
1.0
|
|
Reference:
S.Pintscher,
R.Pietras,
B.Mielecki,
M.Szwalec,
A.Wojcik-Augustyn,
P.Indyka,
M.Rawski,
L.Koziej,
M.Jaciuk,
G.Wazny,
S.Glatt,
A.Osyczka.
Molecular Basis of Plastoquinone Reduction in Plant Cytochrome B 6 F. Nat.Plants 2024.
ISSN: ESSN 2055-0278
PubMed: 39362993
DOI: 10.1038/S41477-024-01804-X
Page generated: Fri Aug 8 04:46:54 2025
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