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Iron in PDB 9f29: Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)

Enzymatic activity of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)

All present enzymatic activity of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map):
2.7.7.7; 3.1.11.1;

Other elements in 9f29:

The structure of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) (pdb code 9f29). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map), PDB code: 9f29:

Iron binding site 1 out of 1 in 9f29

Go back to Iron Binding Sites List in 9f29
Iron binding site 1 out of 1 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:89.8
occ:1.00
OD2 A:ASP404 2.4 66.2 1.0
OD1 A:ASP360 2.6 53.4 1.0
NE2 A:HIS562 2.7 48.3 1.0
NE2 A:HIS362 3.1 35.9 1.0
CD2 A:HIS562 3.5 47.0 1.0
CG A:ASP360 3.5 54.8 1.0
CG A:ASP404 3.6 60.4 1.0
CE1 A:HIS562 3.7 44.4 1.0
CE1 A:HIS362 4.0 42.2 1.0
CD2 A:HIS362 4.0 47.1 1.0
OD2 A:ASP360 4.2 61.8 1.0
CB A:ASP404 4.3 55.9 1.0
CA A:HIS560 4.3 54.4 1.0
CB A:ASP360 4.3 50.0 1.0
OD1 A:ASP404 4.6 60.2 1.0
CG A:HIS562 4.7 48.1 1.0
O A:HIS560 4.7 61.9 1.0
NE2 A:HIS497 4.7 44.7 1.0
ND1 A:HIS562 4.7 45.9 1.0
C A:HIS560 4.8 56.1 1.0
CE1 A:HIS497 4.9 49.5 1.0
CD2 A:HIS560 4.9 59.8 1.0
N A:HIS560 5.0 53.1 1.0

Reference:

M.Martinez-Carranza, L.Sauguet. Communication Between Dna Polymerases and Replication Protein A Within the Archaeal Replisome To Be Published.
Page generated: Fri Aug 8 04:56:58 2025

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