Atomistry » Iron » PDB 9evv-9fhb » 9fc1
Atomistry »
  Iron »
    PDB 9evv-9fhb »
      9fc1 »

Iron in PDB 9fc1: Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S

Protein crystallography data

The structure of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S, PDB code: 9fc1 was solved by M.Lucic, J.A.R.Worrall, M.A.Hough, R.L.Owen, N.Devenish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.25 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.891, 121.661, 199.487, 90, 90, 90
R / Rfree (%) 16.9 / 20

Other elements in 9fc1:

The structure of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S (pdb code 9fc1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S, PDB code: 9fc1:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 1 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:26.5
occ:1.00
 FE A:HEM401 0.0 26.5 1.0
O A:O402 1.8 32.8 1.0
ND A:HEM401 1.9 24.3 1.0
NA A:HEM401 2.0 26.6 1.0
NB A:HEM401 2.1 27.7 1.0
NC A:HEM401 2.1 24.6 1.0
NE2 A:HIS225 2.2 26.6 1.0
C1D A:HEM401 2.9 22.7 1.0
C1B A:HEM401 3.0 27.2 1.0
C4D A:HEM401 3.0 26.8 1.0
C4B A:HEM401 3.0 29.4 1.0
C4A A:HEM401 3.0 28.7 1.0
C4C A:HEM401 3.0 25.6 1.0
C1A A:HEM401 3.1 29.5 1.0
CE1 A:HIS225 3.1 27.5 1.0
C1C A:HEM401 3.1 24.6 1.0
CD2 A:HIS225 3.2 27.6 1.0
CHD A:HEM401 3.3 26.5 1.0
CHB A:HEM401 3.4 28.1 1.0
CHC A:HEM401 3.4 24.3 1.0
CHA A:HEM401 3.5 29.0 1.0
NH1 A:ARG243 3.9 29.9 1.0
C2D A:HEM401 4.1 25.5 1.0
C2B A:HEM401 4.2 28.4 1.0
C3D A:HEM401 4.2 24.9 1.0
C3B A:HEM401 4.2 28.3 1.0
C3A A:HEM401 4.2 29.0 1.0
ND1 A:HIS225 4.3 21.5 1.0
C2A A:HEM401 4.3 26.9 1.0
C3C A:HEM401 4.3 26.3 1.0
CG A:HIS225 4.3 24.5 1.0
C2C A:HEM401 4.4 27.3 1.0
ND2 A:ASN245 4.4 27.4 1.0
CD A:ARG243 4.4 30.1 1.0
CZ A:ARG243 4.7 30.1 1.0
NE A:ARG243 4.9 29.7 1.0

Iron binding site 2 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 2 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:26.8
occ:1.00
 FE B:HEM401 0.0 26.8 1.0
O B:O402 1.6 26.5 0.8
ND B:HEM401 1.9 25.2 1.0
NA B:HEM401 1.9 20.2 1.0
NC B:HEM401 2.0 21.4 1.0
NB B:HEM401 2.1 24.0 1.0
NE2 B:HIS225 2.2 21.9 1.0
C4A B:HEM401 2.9 22.2 1.0
C1D B:HEM401 3.0 23.6 1.0
C4D B:HEM401 3.0 22.4 1.0
C1A B:HEM401 3.0 22.9 1.0
C1B B:HEM401 3.0 22.8 1.0
C4B B:HEM401 3.0 23.7 1.0
C1C B:HEM401 3.1 21.7 1.0
C4C B:HEM401 3.1 23.6 1.0
CD2 B:HIS225 3.1 22.8 1.0
CE1 B:HIS225 3.1 20.3 1.0
CHB B:HEM401 3.4 23.4 1.0
CHA B:HEM401 3.4 24.2 1.0
CHC B:HEM401 3.4 23.3 1.0
CHD B:HEM401 3.5 24.0 1.0
NH1 B:ARG243 4.0 31.5 1.0
C3A B:HEM401 4.1 19.5 1.0
C2A B:HEM401 4.2 20.9 1.0
C2D B:HEM401 4.2 24.1 1.0
C3D B:HEM401 4.2 22.2 1.0
C2B B:HEM401 4.2 22.1 1.0
C2C B:HEM401 4.2 23.5 1.0
ND1 B:HIS225 4.3 21.7 1.0
C3B B:HEM401 4.3 27.6 1.0
CG B:HIS225 4.3 23.2 1.0
C3C B:HEM401 4.3 26.5 1.0
ND2 B:ASN245 4.4 30.4 1.0
CD B:ARG243 4.4 29.0 1.0
CZ B:ARG243 4.7 30.5 1.0
NE B:ARG243 4.9 28.4 1.0

Iron binding site 3 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 3 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:29.9
occ:1.00
 FE C:HEM401 0.0 29.9 1.0
O C:O402 1.9 34.6 0.8
ND C:HEM401 2.0 27.6 1.0
NA C:HEM401 2.0 28.5 1.0
NB C:HEM401 2.1 30.5 1.0
NE2 C:HIS225 2.1 24.4 1.0
NC C:HEM401 2.1 29.8 1.0
C1D C:HEM401 3.0 23.6 1.0
C4D C:HEM401 3.0 22.2 1.0
C1B C:HEM401 3.0 31.1 1.0
C1A C:HEM401 3.0 25.7 1.0
C4A C:HEM401 3.0 26.2 1.0
C4B C:HEM401 3.1 32.2 1.0
CE1 C:HIS225 3.1 28.6 1.0
C4C C:HEM401 3.1 26.2 1.0
CD2 C:HIS225 3.1 28.2 1.0
C1C C:HEM401 3.1 26.8 1.0
CHB C:HEM401 3.3 27.3 1.0
CHA C:HEM401 3.4 23.6 1.0
CHD C:HEM401 3.4 27.9 1.0
CHC C:HEM401 3.5 30.4 1.0
NH1 C:ARG243 4.0 26.2 1.0
C3A C:HEM401 4.2 29.6 1.0
C2D C:HEM401 4.2 30.8 1.0
C2A C:HEM401 4.2 27.8 1.0
ND1 C:HIS225 4.2 28.1 1.0
C3D C:HEM401 4.2 25.2 1.0
CG C:HIS225 4.3 29.3 1.0
C2B C:HEM401 4.3 29.8 1.0
C3B C:HEM401 4.3 31.2 1.0
C2C C:HEM401 4.3 30.2 1.0
C3C C:HEM401 4.4 31.4 1.0
CD C:ARG243 4.5 37.5 1.0
ND2 C:ASN245 4.5 31.6 1.0
CZ C:ARG243 4.7 38.3 1.0
NE C:ARG243 4.9 34.3 1.0

Iron binding site 4 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 4 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe401

b:24.2
occ:1.00
 FE D:HEM401 0.0 24.2 1.0
O D:O402 1.8 26.2 1.0
ND D:HEM401 1.9 24.2 1.0
NA D:HEM401 2.0 20.2 1.0
NB D:HEM401 2.0 23.5 1.0
NC D:HEM401 2.1 19.8 1.0
NE2 D:HIS225 2.1 24.8 1.0
C1D D:HEM401 2.9 23.1 1.0
C4D D:HEM401 3.0 22.8 1.0
C4B D:HEM401 3.0 25.6 1.0
C1A D:HEM401 3.0 23.5 1.0
C1C D:HEM401 3.0 20.5 1.0
C4A D:HEM401 3.1 22.0 1.0
C1B D:HEM401 3.1 27.7 1.0
CD2 D:HIS225 3.1 27.0 1.0
CE1 D:HIS225 3.1 24.7 1.0
C4C D:HEM401 3.1 20.3 1.0
CHC D:HEM401 3.3 20.3 1.0
CHA D:HEM401 3.4 25.4 1.0
CHD D:HEM401 3.4 20.1 1.0
CHB D:HEM401 3.5 22.4 1.0
NH1 D:ARG243 4.0 29.9 1.0
C3D D:HEM401 4.2 22.1 1.0
C2D D:HEM401 4.2 23.8 1.0
C2A D:HEM401 4.2 23.7 1.0
C3A D:HEM401 4.2 21.9 1.0
C3B D:HEM401 4.2 29.1 1.0
CG D:HIS225 4.3 23.8 1.0
ND1 D:HIS225 4.3 21.6 1.0
C2C D:HEM401 4.3 24.6 1.0
C2B D:HEM401 4.3 27.7 1.0
C3C D:HEM401 4.3 22.7 1.0
ND2 D:ASN245 4.4 33.8 1.0
CD D:ARG243 4.4 32.0 1.0
CZ D:ARG243 4.7 31.9 1.0
NE D:ARG243 4.9 33.1 1.0

Iron binding site 5 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 5 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe401

b:26.2
occ:1.00
 FE E:HEM401 0.0 26.2 1.0
ND E:HEM401 1.9 25.2 1.0
O E:O402 1.9 35.2 1.0
NA E:HEM401 2.0 25.4 1.0
NB E:HEM401 2.1 25.0 1.0
NE2 E:HIS225 2.1 24.3 1.0
NC E:HEM401 2.1 23.2 1.0
C1D E:HEM401 2.9 27.9 1.0
C4D E:HEM401 2.9 29.2 1.0
C1B E:HEM401 3.0 23.7 1.0
C4A E:HEM401 3.0 21.8 1.0
CE1 E:HIS225 3.0 34.7 1.0
C1A E:HEM401 3.1 23.5 1.0
C1C E:HEM401 3.1 21.7 1.0
C4B E:HEM401 3.1 25.0 1.0
CD2 E:HIS225 3.1 27.8 1.0
C4C E:HEM401 3.1 23.8 1.0
CHB E:HEM401 3.3 22.4 1.0
CHA E:HEM401 3.4 23.9 1.0
CHC E:HEM401 3.4 22.6 1.0
CHD E:HEM401 3.4 27.4 1.0
NH1 E:ARG243 4.1 32.6 1.0
C2D E:HEM401 4.1 25.8 1.0
ND1 E:HIS225 4.2 26.3 1.0
C2B E:HEM401 4.2 26.1 1.0
CG E:HIS225 4.2 31.4 1.0
C3A E:HEM401 4.2 23.1 1.0
C3D E:HEM401 4.2 25.1 1.0
C2A E:HEM401 4.3 28.4 1.0
C2C E:HEM401 4.3 26.9 1.0
C3B E:HEM401 4.3 29.8 1.0
C3C E:HEM401 4.3 25.2 1.0
ND2 E:ASN245 4.4 27.9 1.0
CD E:ARG243 4.4 33.7 1.0
CZ E:ARG243 4.7 32.7 1.0
NE E:ARG243 4.9 34.0 1.0

Iron binding site 6 out of 6 in 9fc1

Go back to Iron Binding Sites List in 9fc1
Iron binding site 6 out of 6 in the Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe401

b:27.2
occ:1.00
 FE F:HEM401 0.0 27.2 1.0
O F:O402 1.7 29.2 0.8
ND F:HEM401 1.9 23.4 1.0
NA F:HEM401 2.0 25.7 1.0
NB F:HEM401 2.0 29.7 1.0
NC F:HEM401 2.1 24.5 1.0
NE2 F:HIS225 2.1 24.0 1.0
C1D F:HEM401 2.9 25.0 1.0
C4D F:HEM401 2.9 22.2 1.0
C1B F:HEM401 3.0 28.6 1.0
C4A F:HEM401 3.0 27.7 1.0
C1A F:HEM401 3.0 24.7 1.0
C4B F:HEM401 3.0 30.6 1.0
CE1 F:HIS225 3.1 25.9 1.0
CD2 F:HIS225 3.1 24.9 1.0
C4C F:HEM401 3.1 26.5 1.0
C1C F:HEM401 3.1 24.5 1.0
CHB F:HEM401 3.3 25.6 1.0
CHD F:HEM401 3.4 23.9 1.0
CHA F:HEM401 3.4 30.7 1.0
CHC F:HEM401 3.5 23.3 1.0
NH1 F:ARG243 4.0 31.0 1.0
C2D F:HEM401 4.1 25.3 1.0
C3D F:HEM401 4.2 24.2 1.0
C3A F:HEM401 4.2 23.3 1.0
ND1 F:HIS225 4.2 25.1 1.0
C2A F:HEM401 4.2 25.9 1.0
C2B F:HEM401 4.2 24.6 1.0
CG F:HIS225 4.2 23.1 1.0
C3B F:HEM401 4.3 31.1 1.0
C2C F:HEM401 4.3 27.6 1.0
C3C F:HEM401 4.3 27.5 1.0
ND2 F:ASN245 4.5 30.8 1.0
CD F:ARG243 4.5 31.1 1.0
CZ F:ARG243 4.8 30.9 1.0
NE F:ARG243 4.9 35.0 1.0

Reference:

M.Lucic, J.A.R.Worrall, M.A.Hough, R.L.Owen, N.Devenish. Dye-Decolourising Peroxidase Dtpb Mixed with Hydrogen Peroxide For 6.7 S To Be Published.
Page generated: Fri Aug 8 05:13:39 2025

Last articles

Fe in 9UUU
Fe in 9VIB
Fe in 9UDF
Fe in 9UD9
Fe in 9UDA
Fe in 9UD6
Fe in 9UD4
Fe in 9UD5
Fe in 9UD3
Fe in 9QM1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy